Clone BO05252 Report

Search the DGRC for BO05252

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:52
Vector:pDNR-Dual
Associated Gene/Transcriptchinmo-RA
Protein status:BO05252.pep: Imported from assembly
Sequenced Size:1846

Clone Sequence Records

BO05252.3prime Sequence

919 bp (828 high quality bases) assembled on 2005-12-02

> BO05252.3prime
ATGGTCTAGAAAGCTTGCTGGTGAATGATTGCTGGCTGCCGCTGTAGCCG
CTGCTGATGCTGCAGCTGCCGCTGCCAAGTGTGCTGGAGCAATTGTTGCA
CCCGCCGCCAATCCGATTTCCTGCTTGTGCTCCCTGGCAATGTGACGGCG
CACCGTGTTGTTTCGCGTGAAGGTCCGCTCGCAGAAGGGACATGGCACTC
GGATGCCCTGATGACGCTGCCGGATATGCGCCCGCAGATTCGTCTCGTAT
CCGTACAGACGATCGCAGTAGAGACACTTCAGCTTCTTACCGTCGGCCGT
GTTCACGCTGTTCTTGTTGTTCATCTTGGTGGCGTTCCATACGTTCAACA
TGTCCGCCGGCGCAATCGACGCGGCCAGGTTACTGGACAGCGTTCCGTCC
GCCTTCAGGTTCTCCAGCAGCGTATTCGGTGTGGTCGACGAGGTGTTCGA
GTTTGGCGGCGGTGGCGGTGAGTACTTCAAGTTCTCCAGCTTCACGCGCA
GATCCTCGGCTCCGTTATCTGTAGACTCATCCATAAGCTCGCGGTCGTCG
TCATTAGCCTCATTGGCACTGCCATTGTTTCGCTCTGATTTCACAATACG
CTCCAGGCTACTGGTGGCATTTCCATTTCCCGCTGTGGTGCTGGGACTAT
GGTTCTCGTAGCGACTGGACTGTGGCGATGCGCGTTCGGAGTGCATGGTG
TCGGCCTCGGTGGGCGCCGTGGAGGAGGCGCTGGACGAGGGACGGTGGTA
CGGCGGCTTGTTGATGGGGCTGGGACACTCGGAGGACTTGGAGCCATCTC
GCANGACGGAACCGCGCTGTTCCTGCTCGGAATACGGACTGCGGACTATA
GCCCTCTTGCGCGGAGGTTCGTAGTTAATAGGCCGGTAGATGGGCGGCAC
ATGGGTGTAGCCCATTCCG

BO05252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31666-PD 1815 CG31666-RD 912..1812 919..19 4436 99.6 Minus
CG31666-PA 1815 CG31666-RA 912..1812 919..19 4436 99.6 Minus
CG31666-PC 1815 CG31666-RC 912..1812 919..19 4436 99.6 Minus
CG31666-PB 2385 CG31666-RB 912..1678 919..153 3766 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-RG 6089 CG31666-RG 2718..3618 919..19 4464 99.7 Minus
chinmo-RF 5037 CG31666-RF 1666..2566 919..19 4464 99.7 Minus
chinmo-RE 6320 CG31666-RE 2949..3849 919..19 4464 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1695649..1696146 516..19 2490 100 Minus
2L 23513712 2L 1695122..1695376 919..665 1264 99.6 Minus
2L 23513712 2L 1695435..1695586 668..517 730 98.7 Minus
Blast to na_te.dros performed on 2015-02-11 02:37:50 has no hits.

BO05252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:10 Download gff for BO05252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31666-PA 912..1815 18..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:04 Download gff for BO05252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31666-PC 912..1815 18..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:34 Download gff for BO05252.3prime
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2949..3857 13..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:17 Download gff for BO05252.3prime
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2949..3857 13..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:17 Download gff for BO05252.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1695122..1695376 665..919 99 -> Minus
2L 1695439..1695586 517..664 98 -> Minus
2L 1695649..1696154 13..516 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:34 Download gff for BO05252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1695122..1695376 665..919 99 -> Minus
arm_2L 1695439..1695586 517..664 98 -> Minus
arm_2L 1695649..1696154 13..516 99   Minus

BO05252.5prime Sequence

969 bp (822 high quality bases) assembled on 2005-12-02

> BO05252.5prime
GAAGTTATCAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGA
ACAGTTTCTCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCG
GATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGC
CCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTG
AGAACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACG
CCGGACAACATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCA
CGTCTCCCAGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGC
AGGTCAAAGGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCA
CAACAACACATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCG
GAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCG
GAGTCGGAATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCC
GGCATGGGCATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGG
AGGAATGGCGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAG
CGGCCAGCGCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATA
ATCAGCGGATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGG
TAATGGCAGCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTG
GCGGCAACAATGGACCCATTAGCCTGGGAAGCGGCGCGGGCGCTGCTCAC
CATCTGGGCGGATCCACTGGCATCTTGAAGCAGGAATGCGACTCCCTGAT
GCATCCGGGTGGCAGTAGTTCCTCTTCCGGAATGGGCTACACCCATGTGC
CGCCAATCTACCGGGCTAT

BO05252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31666-PD 1815 CG31666-RD 1..948 17..964 4640 99.5 Plus
CG31666-PA 1815 CG31666-RA 1..948 17..964 4640 99.5 Plus
CG31666-PB 2385 CG31666-RB 1..948 17..964 4640 99.5 Plus
CG31666-PC 1815 CG31666-RC 1..948 17..964 4640 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-RG 6089 CG31666-RG 1806..2759 16..969 4695 99.5 Plus
chinmo-RF 5037 CG31666-RF 754..1707 16..969 4695 99.5 Plus
chinmo-RE 6320 CG31666-RE 2037..2990 16..969 4695 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1694542..1695163 348..969 3035 99.2 Plus
2L 23513712 2L 1694223..1694443 134..354 1105 100 Plus
2L 23513712 2L 1690637..1690756 16..135 600 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:36:46 has no hits.

BO05252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:11 Download gff for BO05252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31666-PB 1..953 17..969 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:06 Download gff for BO05252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31666-PC 1..953 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:05 Download gff for BO05252.5prime
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2037..2990 16..969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:33 Download gff for BO05252.5prime
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2037..2990 16..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:33 Download gff for BO05252.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1694224..1694441 135..352 100 -> Plus
2L 1690637..1690755 16..134 100 -> Plus
2L 1694547..1695163 353..969 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:05 Download gff for BO05252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1690637..1690755 16..134 100 -> Plus
arm_2L 1694224..1694441 135..352 100 -> Plus
arm_2L 1694547..1695163 353..969 99   Plus

BO05252.complete Sequence

1846 bp assembled on 2008-08-14

GenBank Submission: FJ630006

> BO05252.complete
GAAGTTATCAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGA
ACAGTTTCTCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCG
GATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGC
CCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTG
AGAACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACG
CCGGACAACATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCA
CGTCTCCCAGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGC
AGGTCAAAGGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCA
CAACAACACATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCG
GAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCG
GAGTCGGAATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCC
GGCATGGGCATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGG
AGGAATGGCGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAG
CGGCCAGCGCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATA
ATCAGCGGATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGG
TAATGGCAGCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTG
GCGGCAACAATGGACCCATTAGCCTGGGAAGCGGCGCGGGCGCTGCTCAC
CATCTGGGCGGATCCACTGGCATCTTGAAGCAGGAATGCGACTCCCTGAT
GCATCCGGGTGGCAGTAGTTCCTCTTCCGGAATGGGCTACACCCATGTGC
CGCCCATCTACCGGCCTATTAACTACGAACCTCCGCGCAAGAGGGCTATA
GTCCGCAGTCCGTATTCCGAGCAGGAACAGCGCGGTTCCGTCCTGCGAGA
TGGCTCCAAGTCCTCCGAGTGTCCCAGCCCCATCAACAAGCCGCCGTACC
ACCGTCCCTCGTCCAGCGCCTCCTCCACGGCGCCCACCGAGGCCGACACC
ATGCACTCCGAACGCGCATCGCCACAGTCCAGTCGCTACGAGAACCATAG
TCCCAGCACCACAGCGGGAAATGGAAATGCCACCAGTAGCCTGGAGCGTA
TTGTGAAATCAGAGCGAAACAATGGCAGTGCCAATGAGGCTAATGACGAC
GACCGCGAGCTTATGGATGAGTCTACAGATAACGGAGCCGAGGATCTGCG
CGTGAAGCTGGAGAACTTGAAGTACTCACCGCCACCGCCGCCAAACTCGA
ACACCTCGTCGACCACACCGAATACGCTGCTGGAGAACCTGAAGGCGGAC
GGAACGCTGTCCAGTAACCTGGCCGCGTCGATTGCGCCGGCGGACATGTT
GAACGTATGGAACGCCACCAAGATGAACAACAAGAACAGCGTGAACACGG
CCGACGGTAAGAAGCTGAAGTGTCTCTACTGCGATCGTCTGTACGGATAC
GAGACGAATCTGCGGGCGCATATCCGGCAGCGTCATCAGGGCATCCGAGT
GCCATGTCCCTTCTGCGAGCGGACCTTCACGCGAAACAACACGGTGCGCC
GTCACATTGCCAGGGAGCACAAGCAGGAAATCGGATTGGCGGCGGGTGCA
ACAATTGCTCCAGCACACTTGGCAGCGGCAGCTGCAGCATCAGCAGCGGC
TACAGCGGCAGCCAGCAATCATTCACCAGCAAGCTTTCTAGACCAT

BO05252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-RG 1815 CG31666-PG 1..1812 17..1828 8985 99.7 Plus
chinmo-RF 2523 CG31666-PF 1..1812 17..1828 8985 99.7 Plus
chinmo-RE 2523 CG31666-PE 1..1812 17..1828 8985 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-RG 6089 CG31666-RG 1806..3618 16..1828 8990 99.7 Plus
chinmo-RF 5037 CG31666-RF 754..2566 16..1828 8990 99.7 Plus
chinmo-RE 6320 CG31666-RE 2037..3849 16..1828 8990 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1694542..1695376 348..1182 4130 99.6 Plus
2L 23513712 2L 1695649..1696146 1331..1828 2490 100 Plus
2L 23513712 2L 1694223..1694443 134..354 1105 100 Plus
2L 23513712 2L 1695435..1695586 1179..1330 730 98.7 Plus
2L 23513712 2L 1690637..1690756 16..135 600 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:03:41 has no hits.

BO05252.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:58 Download gff for BO05252.complete
Subject Subject Range Query Range Percent Splice Strand
chinmo-RC 754..2574 16..1834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:43 Download gff for BO05252.complete
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2038..3849 17..1830 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:24 Download gff for BO05252.complete
Subject Subject Range Query Range Percent Splice Strand
chinmo-RC 755..2566 17..1830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:47 Download gff for BO05252.complete
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2038..3849 17..1830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:47 Download gff for BO05252.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1690638..1690755 17..134 100 -> Plus
2L 1694224..1694441 135..352 100 -> Plus
2L 1694547..1695376 353..1182 99 -> Plus
2L 1695439..1695586 1183..1330 98 -> Plus
2L 1695649..1696146 1331..1830 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:43 Download gff for BO05252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1690638..1690755 17..134 100 -> Plus
arm_2L 1694224..1694441 135..352 100 -> Plus
arm_2L 1694547..1695376 353..1182 99 -> Plus
arm_2L 1695439..1695586 1183..1330 98 -> Plus
arm_2L 1695649..1696146 1331..1830 99   Plus

BO05252.pep Sequence

Translation from 16 to 1846

> BO05252.pep
MDPQQQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLIL
AACSKKFADLFENTPTNGQCVIILEATTPDNMAALLEFMYKGEVHVSQEA
LNSFLKSAESLQVKGLSTETGRLAAQQAQQHMGDLSPLDSPTGRRSVRNS
LSGGSSSIVPGGVGIGLGGGATGANSMSGMGIGNGLSLAGMAAGGGMAAA
ANAAASSLSTLAASANIVDRCGSAGANIISGSAAGIGGSHSGGAGNGSGT
VGIGGNGVGSGGGNNGPISLGSGAGAAHHLGGSTGILKQECDSLMHPGGS
SSSSGMGYTHVPPIYRPINYEPPRKRAIVRSPYSEQEQRGSVLRDGSKSS
ECPSPINKPPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA
GNGNATSSLERIVKSERNNGSANEANDDDRELMDESTDNGAEDLRVKLEN
LKYSPPPPPNSNTSSTTPNTLLENLKADGTLSSNLAASIAPADMLNVWNA
TKMNNKNSVNTADGKKLKCLYCDRLYGYETNLRAHIRQRHQGIRVPCPFC
ERTFTRNNTVRRHIAREHKQEIGLAAGATIAPAHLAAAAAASAAATAAAS
NHSPASFLDH

BO05252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-PG 604 CG31666-PG 1..604 1..604 3113 100 Plus
chinmo-PF 840 CG31666-PF 1..604 1..604 3113 100 Plus
chinmo-PE 840 CG31666-PE 1..604 1..604 3113 100 Plus
chinmo-PA 604 CG31666-PA 1..604 1..604 3113 100 Plus
chinmo-PD 604 CG31666-PD 1..604 1..604 3113 100 Plus