Clone Sequence Records
BO05252.3prime Sequence
919 bp (828 high quality bases) assembled on 2005-12-02
> BO05252.3prime
ATGGTCTAGAAAGCTTGCTGGTGAATGATTGCTGGCTGCCGCTGTAGCCG
CTGCTGATGCTGCAGCTGCCGCTGCCAAGTGTGCTGGAGCAATTGTTGCA
CCCGCCGCCAATCCGATTTCCTGCTTGTGCTCCCTGGCAATGTGACGGCG
CACCGTGTTGTTTCGCGTGAAGGTCCGCTCGCAGAAGGGACATGGCACTC
GGATGCCCTGATGACGCTGCCGGATATGCGCCCGCAGATTCGTCTCGTAT
CCGTACAGACGATCGCAGTAGAGACACTTCAGCTTCTTACCGTCGGCCGT
GTTCACGCTGTTCTTGTTGTTCATCTTGGTGGCGTTCCATACGTTCAACA
TGTCCGCCGGCGCAATCGACGCGGCCAGGTTACTGGACAGCGTTCCGTCC
GCCTTCAGGTTCTCCAGCAGCGTATTCGGTGTGGTCGACGAGGTGTTCGA
GTTTGGCGGCGGTGGCGGTGAGTACTTCAAGTTCTCCAGCTTCACGCGCA
GATCCTCGGCTCCGTTATCTGTAGACTCATCCATAAGCTCGCGGTCGTCG
TCATTAGCCTCATTGGCACTGCCATTGTTTCGCTCTGATTTCACAATACG
CTCCAGGCTACTGGTGGCATTTCCATTTCCCGCTGTGGTGCTGGGACTAT
GGTTCTCGTAGCGACTGGACTGTGGCGATGCGCGTTCGGAGTGCATGGTG
TCGGCCTCGGTGGGCGCCGTGGAGGAGGCGCTGGACGAGGGACGGTGGTA
CGGCGGCTTGTTGATGGGGCTGGGACACTCGGAGGACTTGGAGCCATCTC
GCANGACGGAACCGCGCTGTTCCTGCTCGGAATACGGACTGCGGACTATA
GCCCTCTTGCGCGGAGGTTCGTAGTTAATAGGCCGGTAGATGGGCGGCAC
ATGGGTGTAGCCCATTCCG
BO05252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31666-PD | 1815 | CG31666-RD | 912..1812 | 919..19 | 4436 | 99.6 | Minus |
CG31666-PA | 1815 | CG31666-RA | 912..1812 | 919..19 | 4436 | 99.6 | Minus |
CG31666-PC | 1815 | CG31666-RC | 912..1812 | 919..19 | 4436 | 99.6 | Minus |
CG31666-PB | 2385 | CG31666-RB | 912..1678 | 919..153 | 3766 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-RG | 6089 | CG31666-RG | 2718..3618 | 919..19 | 4464 | 99.7 | Minus |
chinmo-RF | 5037 | CG31666-RF | 1666..2566 | 919..19 | 4464 | 99.7 | Minus |
chinmo-RE | 6320 | CG31666-RE | 2949..3849 | 919..19 | 4464 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1695649..1696146 | 516..19 | 2490 | 100 | Minus |
2L | 23513712 | 2L | 1695122..1695376 | 919..665 | 1264 | 99.6 | Minus |
2L | 23513712 | 2L | 1695435..1695586 | 668..517 | 730 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:37:50 has no hits.
BO05252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:10 Download gff for
BO05252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31666-PA | 912..1815 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:04 Download gff for
BO05252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31666-PC | 912..1815 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:34 Download gff for
BO05252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2949..3857 | 13..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:17 Download gff for
BO05252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2949..3857 | 13..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:17 Download gff for
BO05252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1695122..1695376 | 665..919 | 99 | -> | Minus |
2L | 1695439..1695586 | 517..664 | 98 | -> | Minus |
2L | 1695649..1696154 | 13..516 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:34 Download gff for
BO05252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1695122..1695376 | 665..919 | 99 | -> | Minus |
arm_2L | 1695439..1695586 | 517..664 | 98 | -> | Minus |
arm_2L | 1695649..1696154 | 13..516 | 99 | | Minus |
BO05252.5prime Sequence
969 bp (822 high quality bases) assembled on 2005-12-02
> BO05252.5prime
GAAGTTATCAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGA
ACAGTTTCTCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCG
GATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGC
CCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTG
AGAACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACG
CCGGACAACATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCA
CGTCTCCCAGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGC
AGGTCAAAGGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCA
CAACAACACATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCG
GAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCG
GAGTCGGAATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCC
GGCATGGGCATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGG
AGGAATGGCGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAG
CGGCCAGCGCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATA
ATCAGCGGATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGG
TAATGGCAGCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTG
GCGGCAACAATGGACCCATTAGCCTGGGAAGCGGCGCGGGCGCTGCTCAC
CATCTGGGCGGATCCACTGGCATCTTGAAGCAGGAATGCGACTCCCTGAT
GCATCCGGGTGGCAGTAGTTCCTCTTCCGGAATGGGCTACACCCATGTGC
CGCCAATCTACCGGGCTAT
BO05252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31666-PD | 1815 | CG31666-RD | 1..948 | 17..964 | 4640 | 99.5 | Plus |
CG31666-PA | 1815 | CG31666-RA | 1..948 | 17..964 | 4640 | 99.5 | Plus |
CG31666-PB | 2385 | CG31666-RB | 1..948 | 17..964 | 4640 | 99.5 | Plus |
CG31666-PC | 1815 | CG31666-RC | 1..948 | 17..964 | 4640 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-RG | 6089 | CG31666-RG | 1806..2759 | 16..969 | 4695 | 99.5 | Plus |
chinmo-RF | 5037 | CG31666-RF | 754..1707 | 16..969 | 4695 | 99.5 | Plus |
chinmo-RE | 6320 | CG31666-RE | 2037..2990 | 16..969 | 4695 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1694542..1695163 | 348..969 | 3035 | 99.2 | Plus |
2L | 23513712 | 2L | 1694223..1694443 | 134..354 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 1690637..1690756 | 16..135 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:36:46 has no hits.
BO05252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:11 Download gff for
BO05252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31666-PB | 1..953 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:06 Download gff for
BO05252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31666-PC | 1..953 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:05 Download gff for
BO05252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2037..2990 | 16..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:33 Download gff for
BO05252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2037..2990 | 16..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:33 Download gff for
BO05252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1694224..1694441 | 135..352 | 100 | -> | Plus |
2L | 1690637..1690755 | 16..134 | 100 | -> | Plus |
2L | 1694547..1695163 | 353..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:05 Download gff for
BO05252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1690637..1690755 | 16..134 | 100 | -> | Plus |
arm_2L | 1694224..1694441 | 135..352 | 100 | -> | Plus |
arm_2L | 1694547..1695163 | 353..969 | 99 | | Plus |
BO05252.complete Sequence
1846 bp assembled on 2008-08-14
GenBank Submission: FJ630006
> BO05252.complete
GAAGTTATCAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGA
ACAGTTTCTCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCG
GATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGC
CCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTG
AGAACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACG
CCGGACAACATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCA
CGTCTCCCAGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGC
AGGTCAAAGGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCA
CAACAACACATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCG
GAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCG
GAGTCGGAATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCC
GGCATGGGCATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGG
AGGAATGGCGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAG
CGGCCAGCGCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATA
ATCAGCGGATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGG
TAATGGCAGCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTG
GCGGCAACAATGGACCCATTAGCCTGGGAAGCGGCGCGGGCGCTGCTCAC
CATCTGGGCGGATCCACTGGCATCTTGAAGCAGGAATGCGACTCCCTGAT
GCATCCGGGTGGCAGTAGTTCCTCTTCCGGAATGGGCTACACCCATGTGC
CGCCCATCTACCGGCCTATTAACTACGAACCTCCGCGCAAGAGGGCTATA
GTCCGCAGTCCGTATTCCGAGCAGGAACAGCGCGGTTCCGTCCTGCGAGA
TGGCTCCAAGTCCTCCGAGTGTCCCAGCCCCATCAACAAGCCGCCGTACC
ACCGTCCCTCGTCCAGCGCCTCCTCCACGGCGCCCACCGAGGCCGACACC
ATGCACTCCGAACGCGCATCGCCACAGTCCAGTCGCTACGAGAACCATAG
TCCCAGCACCACAGCGGGAAATGGAAATGCCACCAGTAGCCTGGAGCGTA
TTGTGAAATCAGAGCGAAACAATGGCAGTGCCAATGAGGCTAATGACGAC
GACCGCGAGCTTATGGATGAGTCTACAGATAACGGAGCCGAGGATCTGCG
CGTGAAGCTGGAGAACTTGAAGTACTCACCGCCACCGCCGCCAAACTCGA
ACACCTCGTCGACCACACCGAATACGCTGCTGGAGAACCTGAAGGCGGAC
GGAACGCTGTCCAGTAACCTGGCCGCGTCGATTGCGCCGGCGGACATGTT
GAACGTATGGAACGCCACCAAGATGAACAACAAGAACAGCGTGAACACGG
CCGACGGTAAGAAGCTGAAGTGTCTCTACTGCGATCGTCTGTACGGATAC
GAGACGAATCTGCGGGCGCATATCCGGCAGCGTCATCAGGGCATCCGAGT
GCCATGTCCCTTCTGCGAGCGGACCTTCACGCGAAACAACACGGTGCGCC
GTCACATTGCCAGGGAGCACAAGCAGGAAATCGGATTGGCGGCGGGTGCA
ACAATTGCTCCAGCACACTTGGCAGCGGCAGCTGCAGCATCAGCAGCGGC
TACAGCGGCAGCCAGCAATCATTCACCAGCAAGCTTTCTAGACCAT
BO05252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-RG | 1815 | CG31666-PG | 1..1812 | 17..1828 | 8985 | 99.7 | Plus |
chinmo-RF | 2523 | CG31666-PF | 1..1812 | 17..1828 | 8985 | 99.7 | Plus |
chinmo-RE | 2523 | CG31666-PE | 1..1812 | 17..1828 | 8985 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-RG | 6089 | CG31666-RG | 1806..3618 | 16..1828 | 8990 | 99.7 | Plus |
chinmo-RF | 5037 | CG31666-RF | 754..2566 | 16..1828 | 8990 | 99.7 | Plus |
chinmo-RE | 6320 | CG31666-RE | 2037..3849 | 16..1828 | 8990 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1694542..1695376 | 348..1182 | 4130 | 99.6 | Plus |
2L | 23513712 | 2L | 1695649..1696146 | 1331..1828 | 2490 | 100 | Plus |
2L | 23513712 | 2L | 1694223..1694443 | 134..354 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 1695435..1695586 | 1179..1330 | 730 | 98.7 | Plus |
2L | 23513712 | 2L | 1690637..1690756 | 16..135 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:03:41 has no hits.
BO05252.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:58 Download gff for
BO05252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RC | 754..2574 | 16..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:43 Download gff for
BO05252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2038..3849 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:24 Download gff for
BO05252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RC | 755..2566 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:47 Download gff for
BO05252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2038..3849 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:47 Download gff for
BO05252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1690638..1690755 | 17..134 | 100 | -> | Plus |
2L | 1694224..1694441 | 135..352 | 100 | -> | Plus |
2L | 1694547..1695376 | 353..1182 | 99 | -> | Plus |
2L | 1695439..1695586 | 1183..1330 | 98 | -> | Plus |
2L | 1695649..1696146 | 1331..1830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:43 Download gff for
BO05252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1690638..1690755 | 17..134 | 100 | -> | Plus |
arm_2L | 1694224..1694441 | 135..352 | 100 | -> | Plus |
arm_2L | 1694547..1695376 | 353..1182 | 99 | -> | Plus |
arm_2L | 1695439..1695586 | 1183..1330 | 98 | -> | Plus |
arm_2L | 1695649..1696146 | 1331..1830 | 99 | | Plus |
BO05252.pep Sequence
Translation from 16 to 1846
> BO05252.pep
MDPQQQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLIL
AACSKKFADLFENTPTNGQCVIILEATTPDNMAALLEFMYKGEVHVSQEA
LNSFLKSAESLQVKGLSTETGRLAAQQAQQHMGDLSPLDSPTGRRSVRNS
LSGGSSSIVPGGVGIGLGGGATGANSMSGMGIGNGLSLAGMAAGGGMAAA
ANAAASSLSTLAASANIVDRCGSAGANIISGSAAGIGGSHSGGAGNGSGT
VGIGGNGVGSGGGNNGPISLGSGAGAAHHLGGSTGILKQECDSLMHPGGS
SSSSGMGYTHVPPIYRPINYEPPRKRAIVRSPYSEQEQRGSVLRDGSKSS
ECPSPINKPPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA
GNGNATSSLERIVKSERNNGSANEANDDDRELMDESTDNGAEDLRVKLEN
LKYSPPPPPNSNTSSTTPNTLLENLKADGTLSSNLAASIAPADMLNVWNA
TKMNNKNSVNTADGKKLKCLYCDRLYGYETNLRAHIRQRHQGIRVPCPFC
ERTFTRNNTVRRHIAREHKQEIGLAAGATIAPAHLAAAAAASAAATAAAS
NHSPASFLDH
BO05252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-PG | 604 | CG31666-PG | 1..604 | 1..604 | 3113 | 100 | Plus |
chinmo-PF | 840 | CG31666-PF | 1..604 | 1..604 | 3113 | 100 | Plus |
chinmo-PE | 840 | CG31666-PE | 1..604 | 1..604 | 3113 | 100 | Plus |
chinmo-PA | 604 | CG31666-PA | 1..604 | 1..604 | 3113 | 100 | Plus |
chinmo-PD | 604 | CG31666-PD | 1..604 | 1..604 | 3113 | 100 | Plus |