Clone Sequence Records
BO05253.3prime Sequence
412 bp (336 high quality bases) assembled on 2005-12-02
> BO05253.3prime
ATGGTCTAGAAAGCTTGCAAAGCGCTGCGGCAATATCTCGCTTTTGATGC
CTCTCAGTGCGTGCTTTTTCTTCCGGTGTGTTGATAGGTTGCACGACTGC
TTGAAGGAGGCACTGCACAGTTCGCAATTGAACCGCCGCTCCTTGCTGTG
AACTACCCGATGTAGCTCCATTCTCGACTTATACTTAAACTTCAAACCAC
AAGTCTCGTAATCGCAGACGTACCAGCGTTCTCCGTCATCTGAAGAGACA
GCACTCCCGGCGCTGGCCGTCGTGCTGTTAGAGTCCTTGGGCAGCTGTTC
CTGACTGGCGGCTAGCATAGCGGCGGCCATAGCCGTCGAAAGAACGACAG
ACATGTTTAGTTGCTGTTGCTGCTGTAGAACATTTGGTGGCGTGGTGCTG
ACCGTATTGGAA
BO05253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 12:19:48 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 2269 | CG17172-RB | 873..1265 | 411..19 | 1935 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23106935..23107327 | 411..19 | 1935 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:48:05 has no hits.
BO05253.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:24 Download gff for
BO05253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 850..1249 | 12..412 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:47 Download gff for
BO05253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 872..1271 | 12..412 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:47 Download gff for
BO05253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23106934..23107333 | 12..412 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:24 Download gff for
BO05253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 85752..86151 | 12..412 | 98 | | Minus |
BO05253.5prime Sequence
424 bp (383 high quality bases) assembled on 2005-12-02
> BO05253.5prime
GAAGTTATCAGTCGACATGGGTTTTCCGCGCATCCTCAGCAAGAACAACA
AGATCTACACCAAGCTGGGCGAGTTCTGTTTGTCGGGGGATAGCTTCTGG
ATTGTTTGTCACACGTGCCAAGAGGAGTTGCAGACACAGGATCAGTTCTG
GAAGCACATACAGGATGAGCATAATTTCATGCACGGGGTGGCAAAGGAAC
ACAGTCGTACATCCAGCTACTGCCTAACGGATGTGGAGGCTGCGGCGGCA
GCAGCAACGCCAGGAAGCAGCTCCCAGCAAGGCGCCACAGCGATCAGTGT
GCCTCTGGCACTTTACACCTGCTCAACCAAGTATTCTGAGGAGGAGCAGC
GGGAGGTGGAAATGCACGAACAGCAGGTGCAACACCAAGTGCAACAGCAG
CAAGCGCAGCAGCAGCAAGCGCAG
BO05253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 12:19:49 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 2269 | CG17172-RB | 101..509 | 16..424 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23106342..23106571 | 195..424 | 1150 | 100 | Plus |
| X | 23542271 | X | 23106103..23106284 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:38:49 has no hits.
BO05253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:10 Download gff for
BO05253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 73..487 | 9..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:03 Download gff for
BO05253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 95..509 | 9..424 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:03 Download gff for
BO05253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23106097..23106283 | 9..196 | 98 | -> | Plus |
| X | 23106344..23106571 | 197..424 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:10 Download gff for
BO05253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 84915..85101 | 9..196 | 98 | -> | Plus |
| XHet | 85162..85389 | 197..424 | 100 | | Plus |
BO05253.complete Sequence
1198 bp assembled on 2008-08-14
GenBank Submission: KX797450
> BO05253.complete
GAAGTTATCAGTCGACATGGGTTTTCCGCGCATCCTCAGCAAGAACAACA
AGATCTACACCAAGCTGGGCGAGTTCTGTTTGTCGGGGGATAGCTTCTGG
ATTGTTTGTCACACGTGCCAAGAGGAGTTGCAGACACAGGATCAGTTCTG
GAAGCACATACAGGATGAGCATAATTTCATGCACGGGGTGGCAAAGGAAC
ACAGTCGTACATCCAGCTACTGCCTAACGGATGTGGAGGCTGCGGCGGCA
GCAGCAACGCCAGGAAGCAGCTCCCAGCAAGGCGCCACAGCGATCAGTGT
GCCTCTGGCACTTTACACCTGCTCAACCAAGTATTCTGAGGAGGAGCAGC
GGGAGGTGGAAATGCACGAACAGCAGGTGCAACACCAAGTGCAACAGCAG
CAAGCGCAGCAGCAGCAAGCGCAGCAGCAACAACACCAACAGTCTCAGCA
GCAAGGGCACCAGCAACACCAGGTTCAACAACAGCAGACCCACCAGCAGC
TCCAACAGCAGCGGGATGTTGCCAAGGAGCTGGCTGAACTCCATGCCAAT
GCGGTAGCTGCCGCTGCAGCCTCCGCAGCTGTGGTATCCACAGGCGAAGG
AACTACCCAAAGTAACAGCGCCATCGACATTAAAATAGAGCCCAGCAGTC
TGACACTTACACCCGAAATGCAGGCTGCTGCAGCAGCTGGGGGGACCATT
TACCATCTGCCACAGCTAGTTCCACCACCTGTACCGCCTCCACCGCCAGG
GTCCGGATTTGTAAGCGTCAGCGCCAGTACCAGCACCTCCAATACGGTCA
GCACCACGCCACCCAATGTTCTACAGCAGCAACAGCAACTAAACATGTCT
GTCGTTCCTTCGACGGCTATGGCCGCCGCTATGCTAGCCGCCAGTCAGGA
ACAGCTGCCCAAGGACTCTAACAGCACGACGGCCAGCGCCGGGAGTGCTG
TCTCTTCAGATGACGGAGAACGCTGGTACGTCTGCGATTACGAGACTTGT
GGTTTGAAGTTTAAGTATAAGTCGAGAATGGAGCTACATCGGGTAGTTCA
CAGCAAGGAGCGGCGGTTCAATTGCGAACTGTGCAGTGCCTCCTTCAAGC
AGTCGTGCAACCTATCAACACACCGGAAGAAAAAGCACGCACTGAGAGGC
ATCAAAAGCGAGATATTGCCGCAGCGCTTTGCAAGCTTTCTAGACCAT
BO05253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 1167 | CG17172-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| CG43689-RH | 4857 | CG43689-PH | 2332..2424 | 395..487 | 180 | 79.6 | Plus |
| CG43689-RE | 5121 | CG43689-PE | 2596..2688 | 395..487 | 180 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 2269 | CG17172-RB | 101..1265 | 16..1180 | 5825 | 100 | Plus |
| CG43689-RH | 6858 | CG43689-RH | 2822..2914 | 395..487 | 180 | 79.6 | Plus |
| CG43689-RE | 7038 | CG43689-RE | 3086..3178 | 395..487 | 180 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23106342..23107327 | 195..1180 | 4930 | 100 | Plus |
| X | 23542271 | X | 23106103..23106284 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6931 | 342..516 | 347 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6878 | 354..512 | 338 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2518 | 369..592 | 307 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2542 | 391..632 | 306 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6899 | 407..579 | 293 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 411..509 | 245 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7030 | 422..730 | 239 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2710..2858 | 368..520 | 197 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2655 | 365..512 | 195 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 446..647 | 181 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2547 | 446..690 | 180 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6635..6950 | 383..716 | 178 | 56.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 54..175 | 395..514 | 163 | 62.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9084..9205 | 395..514 | 163 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1587 | 425..497 | 160 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2665 | 422..498 | 153 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2666 | 442..841 | 152 | 54.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 883..1033 | 358..509 | 136 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1112 | 459..512 | 135 | 72.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..206 | 435..522 | 122 | 61.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9236 | 435..522 | 122 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1564 | 450..516 | 114 | 65.7 | Plus |
BO05253.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:36 Download gff for
BO05253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RA | 73..1249 | 9..1187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:18 Download gff for
BO05253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 80..1243 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:29 Download gff for
BO05253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RA | 80..1243 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:34 Download gff for
BO05253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 102..1265 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:34 Download gff for
BO05253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23106104..23106283 | 17..196 | 100 | -> | Plus |
| X | 23106344..23107327 | 197..1182 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:18 Download gff for
BO05253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 84922..85101 | 17..196 | 100 | -> | Plus |
| XHet | 85162..86145 | 197..1182 | 99 | | Plus |
BO05253.pep Sequence
Translation from 16 to 1198
> BO05253.pep
MGFPRILSKNNKIYTKLGEFCLSGDSFWIVCHTCQEELQTQDQFWKHIQD
EHNFMHGVAKEHSRTSSYCLTDVEAAAAAATPGSSSQQGATAISVPLALY
TCSTKYSEEEQREVEMHEQQVQHQVQQQQAQQQQAQQQQHQQSQQQGHQQ
HQVQQQQTHQQLQQQRDVAKELAELHANAVAAAAASAAVVSTGEGTTQSN
SAIDIKIEPSSLTLTPEMQAAAAAGGTIYHLPQLVPPPVPPPPPGSGFVS
VSASTSTSNTVSTTPPNVLQQQQQLNMSVVPSTAMAAAMLAASQEQLPKD
SNSTTASAGSAVSSDDGERWYVCDYETCGLKFKYKSRMELHRVVHSKERR
FNCELCSASFKQSCNLSTHRKKKHALRGIKSEILPQRFASFLDH
BO05253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-PB | 388 | CG17172-PB | 1..388 | 1..388 | 2009 | 100 | Plus |
| Cf2-PF | 431 | CG11924-PF | 127..431 | 63..376 | 199 | 27.4 | Plus |
| Cf2-PE | 482 | CG11924-PE | 178..482 | 63..376 | 199 | 27.4 | Plus |
| Cf2-PB | 482 | CG11924-PB | 178..482 | 63..376 | 199 | 27.4 | Plus |
| Cf2-PC | 482 | CG11924-PC | 178..482 | 63..376 | 199 | 27.4 | Plus |
