Clone Sequence Records
BO05254.3prime Sequence
970 bp (788 high quality bases) assembled on 2005-12-02
> BO05254.3prime
ATGGTCTAGAAAGCTTGCGTATTTATGCAATGCGGCGGTATCGTAATACT
CCGACTTGGCGACTCGTGGGGATTGCGTCTGGGAGTCGCCGGATGTCGGG
GGCGTCTTGGCCAGCGACAGCGTCAACTGGTGCTGGTCACCCTTGCCGGA
ACCGGTGGTCAGGTGACCGTAGGCCATGTTGAACAGCGCATCCGGATCGC
AGACGAACCGATAGACGTAGCGCTCTCCGTTCACTTTCTGCATGATACCC
TTCTCGTAGTAGTAGCGCAAACTGCGAGATAACTTGTCGTAGTTCATGGC
GGGTCGATTCTTCTGGAGACCCCAACGCCGGGCCACCTCCTCTGGCTCGA
TCAGCTTGAACTCCATGCCACGACCGGTCCAGGCGATGCAACTGGCACTG
GTCGTGGGCTCATCCAGGAGGGCCACCAGAAACTGCCAGAGCTGCAGCGA
ACCCCTGCGCTGGCTGATCGCCTGGCCGTTGCTGCTGGTGGAGATGCCAT
TGCTGGCGTAGAACTGATCCAGGCGCAGTTCCGCATCGCTGGACGTGGTG
GAGTCCACCACATTGGGCCGCAGCGCGGAGGGATAGGTGGATGAGATGGC
CGCGTTGTAGGGACCGCTGTCGTACTTCAGATCTGCATCGCTGACCGCTG
CTAAGGTGGTGGGCGAGAGATCCCTGTACACGGACTGAGACTGCGTCTGC
TGTTGGTGGGCGTAGTGCGAGGGCGTGGCATATACCGCTGAGCTGGATAT
GACCGCCGTATGGCTAAATTTGAAAGCGGATGCGGCATGAAGTGGCGTCA
AGTGGGTGAGAGCCTGCTGCTCCGCCTGCTGATGGCCATGGTGGCCATGG
TGGGAGTGATGGTGGTGCGGATGCAGTGCAGCAGCTTGCTGCAGTTGTTG
CTGGTGTTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCTT
GCTGCTGCTGTTGCTGCTGT
BO05254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6892-PA | 1914 | Ets96B-RA | 960..1911 | 970..19 | 4760 | 100 | Minus |
CG6892-PB | 1923 | Ets96B-RB | 969..1920 | 970..19 | 4760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-RC | 2804 | CG6892-RC | 1134..2085 | 970..19 | 4760 | 100 | Minus |
Ets96B-RB | 3003 | CG6892-RB | 1333..2284 | 970..19 | 4760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24796223..24796795 | 970..398 | 2865 | 100 | Minus |
3R | 32079331 | 3R | 24796855..24797236 | 400..19 | 1910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:39:06 has no hits.
BO05254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:13 Download gff for
BO05254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6892-PA | 960..1914 | 15..970 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:07 Download gff for
BO05254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6892-PB | 969..1923 | 15..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:13 Download gff for
BO05254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 1333..2287 | 15..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:39:57 Download gff for
BO05254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 1333..2287 | 15..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:39:57 Download gff for
BO05254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24796223..24796795 | 398..970 | 100 | -> | Minus |
3R | 24796858..24797239 | 15..397 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:13 Download gff for
BO05254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20621945..20622517 | 398..970 | 100 | -> | Minus |
arm_3R | 20622580..20622961 | 15..397 | 99 | | Minus |
BO05254.5prime Sequence
881 bp (849 high quality bases) assembled on 2005-12-02
> BO05254.5prime
GAAGTTATCAGTCGACATGACAATTTCCTGGCGCGCCTTGTCTCATTTCC
TTATTCCGCAGAGCGACTACGGCGAGGCCAAGACGCACCTGGAGCAGCTG
CAGCAGACGCTCACGCACCTGGACCACCCGCACCACCACCACGCACACCA
TCCGCACCACCACCTGGGGCTCTACCATGGCGCCCTGCCCAACACATCCA
CCATAACCACAGACTCGGTGGTTTCCTGTGTCAGCTCCACACTGCCGGCG
GTGGCCAAGGCCATTTCCGCATCCTCCAGCTGCGATGGCCTGCAGTCGGA
GCGCAAAAAGTGCCCCATCAGCGATCTGGATTCAGGTGGTCATGGTCATG
GTCAGGGGCATGGCCTCATGGAGGCCATCTGCGCTGGCCAGAAGACGTCA
CCTATACCACCGCCGCCACCACCTTGCTGCTTGACCCTGGGCGAAAGCTC
ATCCTCGCCGAATCCCATCGCCACGGCCGCCTTGATGAACGCTTCCACCT
CCGGATCCTCGAGCGCAGGCGGAGCAAGTGCCTCTCTCTGCAACGATCTC
ACACGGGAATCTTCCTGGTACGCCCACCATCATCATCACCACCATCACCA
TCACCATCAGTTGCCCGACGAGCTGGTCATGTATGCCACGCCCACTCCCA
CGCCGGCAATCGGGAAATTCGGACTGGACACTTCCACCGAGGGTTACTTG
AACGCAAGGTACAATGTGAATGTCAAAGGCGTGCGGCATGATAGAACATC
GAGTTTCTTTGACATACCCGCTGTGACGCACCCGCACAACCATCCACACC
CACATCCGCACCCACATCCGCACCCGTACTGCTACAGATTTCCATCATCG
CCACCCGCGGGGCATCTGAAAAAGAGCGACG
BO05254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6892-PB | 1923 | Ets96B-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
CG6892-PA | 1914 | Ets96B-RA | 208..691 | 62..545 | 2420 | 100 | Plus |
CG6892-PA | 1914 | Ets96B-RA | 691..836 | 716..861 | 730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-RB | 3003 | CG6892-RB | 364..1229 | 16..881 | 4285 | 99.8 | Plus |
Ets96B-RC | 2804 | CG6892-RC | 210..1030 | 61..881 | 4060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24792724..24793253 | 16..545 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 24793378..24793549 | 545..716 | 860 | 100 | Plus |
3R | 32079331 | 3R | 24794323..24794444 | 716..837 | 610 | 100 | Plus |
3R | 32079331 | 3R | 24794593..24794639 | 835..881 | 190 | 93.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:17:51 has no hits.
BO05254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:14 Download gff for
BO05254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6892-PB | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:09 Download gff for
BO05254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6892-PB | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:42 Download gff for
BO05254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 358..1229 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:48 Download gff for
BO05254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 358..1229 | 9..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:48 Download gff for
BO05254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24794596..24794639 | 838..881 | 95 | | Plus |
3R | 24792718..24793253 | 9..545 | 99 | -> | Plus |
3R | 24793379..24793549 | 546..716 | 100 | -> | Plus |
3R | 24794324..24794444 | 717..837 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:42 Download gff for
BO05254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20618440..20618975 | 9..545 | 99 | -> | Plus |
arm_3R | 20619101..20619271 | 546..716 | 100 | -> | Plus |
arm_3R | 20620046..20620166 | 717..837 | 100 | -> | Plus |
arm_3R | 20620318..20620361 | 838..881 | 95 | | Plus |
BO05254.complete Sequence
1954 bp assembled on 2008-08-14
GenBank Submission: FJ630007
> BO05254.complete
GAAGTTATCAGTCGACATGACAATTTCCTGGCGCGCCTTGTCTCATTTCC
TTATTCCGCAGAGCGACTACGGCGAGGCCAAGACGCACCTGGAGCAGCTG
CAGCAGACGCTCACGCACCTGGACCACCCGCACCACCACCACGCACACCA
TCCGCACCACCACCTGGGGCTCTACCATGGCGCCCTGCCCAACACATCCA
CCATAACCACAGACTCGGTGGTTTCCTGTGTCAGCTCCACACTGCCGGCG
GTGGCCAAGGCCATTTCCGCATCCTCCAGCTGCGATGGCCTGCAGTCGGA
GCGCAAAAAGTGCCCCATCAGCGATCTGGATTCAGGTGGTCATGGTCATG
GTCAGGGGCATGGCCTCATGGAGGCCATCTGCGCTGGCCAGAAGACGTCA
CCTATACCACCGCCGCCACCACCTTGCTGCTTGACCCTGGGCGAAAGCTC
ATCCTCGCCGAATCCCATCGCCACGGCCGCCTTGATGAACGCTTCCACCT
CCGGATCCTCGAGCGCAGGCGGAGCAAGTGCCTCTCTCTGCAACGATCTC
ACACGGGAATCTTCCTGGTACGCCCACCATCATCATCACCACCATCACCA
TCACCATCAGTTGCCCGACGAGCTGGTCATGTATGCCACGCCCACTCCCA
CGCCGGCAATCGGGAAATTCGGACTGGACACTTCCACCGAGGGTTACTTG
AACGCAAGGTACAATGTGAATGTCAAAGGCGTGCGGCATGATAGAACATC
GAGTTTCTTTGACATACCCGCTGTGACGCACCCGCACAACCATCCACACC
CACATCCGCACCCACATCCGCACCCGTACTGCTACAGATTTCCATCATCG
CCACCCGCGGGCATTCTGAAAAAGAGCGACGAAGAAGCAACCTCGGCCGC
CGTATACTGCAGCGACGTGTCCTCCGGACAGCACTTTCCGCACCACACAA
AGATCGAGCACGCGGACTCCACCACTACGGCGGCACAGCAGCAACAGCAG
CAGCAAGAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACA
CCAGCAACAACTGCAGCAAGCTGCTGCACTGCATCCGCACCACCATCACT
CCCACCATGGCCACCATGGCCATCAGCAGGCGGAGCAGCAGGCTCTCACC
CACTTGACGCCACTTCATGCCGCATCCGCTTTCAAATTTAGCCATACGGC
GGTCATATCCAGCTCAGCGGTATATGCCACGCCCTCGCACTACGCCCACC
AACAGCAGACGCAGTCTCAGTCCGTGTACAGGGATCTCTCGCCCACCACC
TTAGCAGCGGTCAGCGATGCAGATCTGAAGTACGACAGCGGTCCCTACAA
CGCGGCCATCTCATCCACCTATCCCTCCGCGCTGCGGCCCAATGTGGTGG
ACTCCACCACGTCCAGCGATGCGGAACTGCGCCTGGATCAGTTCTACGCC
AGCAATGGCATCTCCACCAGCAGCAACGGCCAGGCGATCAGCCAGCGCAG
GGGTTCGCTGCAGCTCTGGCAGTTTCTGGTGGCCCTCCTGGATGAGCCCA
CGACCAGTGCCAGTTGCATCGCCTGGACCGGTCGTGGCATGGAGTTCAAG
CTGATCGAGCCAGAGGAGGTGGCCCGGCGTTGGGGTCTCCAGAAGAATCG
ACCCGCCATGAACTACGACAAGTTATCTCGCAGTTTGCGCTACTACTACG
AGAAGGGTATCATGCAGAAAGTGAACGGAGAGCGCTACGTCTATCGGTTC
GTCTGCGATCCGGATGCGCTGTTCAACATGGCCTACGGTCACCTGACCAC
CGGTTCCGGCAAGGGTGACCAGCACCAGTTGACGCTGTCGCTGGCCAAGA
CGCCCCCGACATCCGGCGACTCCCAGACGCAATCCCCACGAGTCGCCAAG
TCGGAGTATTACGATACCGCCGCATTGCATAAATACGCAAGCTTTCTAGA
CCAT
BO05254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-RB | 1923 | CG6892-PB | 1..1920 | 17..1936 | 9600 | 100 | Plus |
Ets96B-RC | 1896 | CG6892-PC | 18..1893 | 61..1936 | 9380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-RB | 3003 | CG6892-RB | 364..2284 | 16..1936 | 9605 | 100 | Plus |
Ets96B-RC | 2804 | CG6892-RC | 210..2085 | 61..1936 | 9380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24796121..24796795 | 883..1557 | 3375 | 100 | Plus |
3R | 32079331 | 3R | 24792724..24793253 | 16..545 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 24796855..24797236 | 1555..1936 | 1910 | 100 | Plus |
3R | 32079331 | 3R | 24793378..24793549 | 545..716 | 860 | 100 | Plus |
3R | 32079331 | 3R | 24794323..24794444 | 716..837 | 610 | 100 | Plus |
3R | 32079331 | 3R | 24794593..24794642 | 835..884 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:36:47 has no hits.
BO05254.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:02 Download gff for
BO05254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 358..2287 | 9..1940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:58 Download gff for
BO05254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 365..2284 | 17..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:30 Download gff for
BO05254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 365..2284 | 17..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:06 Download gff for
BO05254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 365..2284 | 17..1938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:06 Download gff for
BO05254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24792725..24793253 | 17..545 | 100 | -> | Plus |
3R | 24793379..24793549 | 546..716 | 100 | -> | Plus |
3R | 24794324..24794444 | 717..837 | 100 | -> | Plus |
3R | 24794596..24794642 | 838..884 | 100 | -> | Plus |
3R | 24796123..24796795 | 885..1557 | 100 | -> | Plus |
3R | 24796858..24797236 | 1558..1938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:58 Download gff for
BO05254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20618447..20618975 | 17..545 | 100 | -> | Plus |
arm_3R | 20619101..20619271 | 546..716 | 100 | -> | Plus |
arm_3R | 20620046..20620166 | 717..837 | 100 | -> | Plus |
arm_3R | 20620318..20620364 | 838..884 | 100 | -> | Plus |
arm_3R | 20621845..20622517 | 885..1557 | 100 | -> | Plus |
arm_3R | 20622580..20622958 | 1558..1938 | 99 | | Plus |
BO05254.pep Sequence
Translation from 16 to 1954
> BO05254.pep
MTISWRALSHFLIPQSDYGEAKTHLEQLQQTLTHLDHPHHHHAHHPHHHL
GLYHGALPNTSTITTDSVVSCVSSTLPAVAKAISASSSCDGLQSERKKCP
ISDLDSGGHGHGQGHGLMEAICAGQKTSPIPPPPPPCCLTLGESSSSPNP
IATAALMNASTSGSSSAGGASASLCNDLTRESSWYAHHHHHHHHHHHQLP
DELVMYATPTPTPAIGKFGLDTSTEGYLNARYNVNVKGVRHDRTSSFFDI
PAVTHPHNHPHPHPHPHPHPYCYRFPSSPPAGILKKSDEEATSAAVYCSD
VSSGQHFPHHTKIEHADSTTTAAQQQQQQQEQQQQQQQQQQQQQHQQQLQ
QAAALHPHHHHSHHGHHGHQQAEQQALTHLTPLHAASAFKFSHTAVISSS
AVYATPSHYAHQQQTQSQSVYRDLSPTTLAAVSDADLKYDSGPYNAAISS
TYPSALRPNVVDSTTSSDAELRLDQFYASNGISTSSNGQAISQRRGSLQL
WQFLVALLDEPTTSASCIAWTGRGMEFKLIEPEEVARRWGLQKNRPAMNY
DKLSRSLRYYYEKGIMQKVNGERYVYRFVCDPDALFNMAYGHLTTGSGKG
DQHQLTLSLAKTPPTSGDSQTQSPRVAKSEYYDTAALHKYASFLDH
BO05254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-PB | 640 | CG6892-PB | 1..640 | 1..640 | 3464 | 100 | Plus |
Ets96B-PC | 631 | CG6892-PC | 7..631 | 16..640 | 3384 | 100 | Plus |
pnt-PC | 623 | CG17077-PC | 455..597 | 443..581 | 309 | 45.2 | Plus |
pnt-PE | 625 | CG17077-PE | 457..599 | 443..581 | 309 | 45.2 | Plus |
Ets65A-PB | 257 | CG7018-PB | 26..163 | 433..578 | 300 | 44.5 | Plus |