Clone BO05254 Report

Search the DGRC for BO05254

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptEts96B-RB
Protein status:BO05254.pep: Imported from assembly
Sequenced Size:1954

Clone Sequence Records

BO05254.3prime Sequence

970 bp (788 high quality bases) assembled on 2005-12-02

> BO05254.3prime
ATGGTCTAGAAAGCTTGCGTATTTATGCAATGCGGCGGTATCGTAATACT
CCGACTTGGCGACTCGTGGGGATTGCGTCTGGGAGTCGCCGGATGTCGGG
GGCGTCTTGGCCAGCGACAGCGTCAACTGGTGCTGGTCACCCTTGCCGGA
ACCGGTGGTCAGGTGACCGTAGGCCATGTTGAACAGCGCATCCGGATCGC
AGACGAACCGATAGACGTAGCGCTCTCCGTTCACTTTCTGCATGATACCC
TTCTCGTAGTAGTAGCGCAAACTGCGAGATAACTTGTCGTAGTTCATGGC
GGGTCGATTCTTCTGGAGACCCCAACGCCGGGCCACCTCCTCTGGCTCGA
TCAGCTTGAACTCCATGCCACGACCGGTCCAGGCGATGCAACTGGCACTG
GTCGTGGGCTCATCCAGGAGGGCCACCAGAAACTGCCAGAGCTGCAGCGA
ACCCCTGCGCTGGCTGATCGCCTGGCCGTTGCTGCTGGTGGAGATGCCAT
TGCTGGCGTAGAACTGATCCAGGCGCAGTTCCGCATCGCTGGACGTGGTG
GAGTCCACCACATTGGGCCGCAGCGCGGAGGGATAGGTGGATGAGATGGC
CGCGTTGTAGGGACCGCTGTCGTACTTCAGATCTGCATCGCTGACCGCTG
CTAAGGTGGTGGGCGAGAGATCCCTGTACACGGACTGAGACTGCGTCTGC
TGTTGGTGGGCGTAGTGCGAGGGCGTGGCATATACCGCTGAGCTGGATAT
GACCGCCGTATGGCTAAATTTGAAAGCGGATGCGGCATGAAGTGGCGTCA
AGTGGGTGAGAGCCTGCTGCTCCGCCTGCTGATGGCCATGGTGGCCATGG
TGGGAGTGATGGTGGTGCGGATGCAGTGCAGCAGCTTGCTGCAGTTGTTG
CTGGTGTTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCTT
GCTGCTGCTGTTGCTGCTGT

BO05254.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6892-PA 1914 Ets96B-RA 960..1911 970..19 4760 100 Minus
CG6892-PB 1923 Ets96B-RB 969..1920 970..19 4760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-RC 2804 CG6892-RC 1134..2085 970..19 4760 100 Minus
Ets96B-RB 3003 CG6892-RB 1333..2284 970..19 4760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24796223..24796795 970..398 2865 100 Minus
3R 32079331 3R 24796855..24797236 400..19 1910 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:39:06 has no hits.

BO05254.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:13 Download gff for BO05254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6892-PA 960..1914 15..970 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:07 Download gff for BO05254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6892-PB 969..1923 15..970 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:13 Download gff for BO05254.3prime
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 1333..2287 15..970 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:39:57 Download gff for BO05254.3prime
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 1333..2287 15..970 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:39:57 Download gff for BO05254.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24796223..24796795 398..970 100 -> Minus
3R 24796858..24797239 15..397 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:13 Download gff for BO05254.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20621945..20622517 398..970 100 -> Minus
arm_3R 20622580..20622961 15..397 99   Minus

BO05254.5prime Sequence

881 bp (849 high quality bases) assembled on 2005-12-02

> BO05254.5prime
GAAGTTATCAGTCGACATGACAATTTCCTGGCGCGCCTTGTCTCATTTCC
TTATTCCGCAGAGCGACTACGGCGAGGCCAAGACGCACCTGGAGCAGCTG
CAGCAGACGCTCACGCACCTGGACCACCCGCACCACCACCACGCACACCA
TCCGCACCACCACCTGGGGCTCTACCATGGCGCCCTGCCCAACACATCCA
CCATAACCACAGACTCGGTGGTTTCCTGTGTCAGCTCCACACTGCCGGCG
GTGGCCAAGGCCATTTCCGCATCCTCCAGCTGCGATGGCCTGCAGTCGGA
GCGCAAAAAGTGCCCCATCAGCGATCTGGATTCAGGTGGTCATGGTCATG
GTCAGGGGCATGGCCTCATGGAGGCCATCTGCGCTGGCCAGAAGACGTCA
CCTATACCACCGCCGCCACCACCTTGCTGCTTGACCCTGGGCGAAAGCTC
ATCCTCGCCGAATCCCATCGCCACGGCCGCCTTGATGAACGCTTCCACCT
CCGGATCCTCGAGCGCAGGCGGAGCAAGTGCCTCTCTCTGCAACGATCTC
ACACGGGAATCTTCCTGGTACGCCCACCATCATCATCACCACCATCACCA
TCACCATCAGTTGCCCGACGAGCTGGTCATGTATGCCACGCCCACTCCCA
CGCCGGCAATCGGGAAATTCGGACTGGACACTTCCACCGAGGGTTACTTG
AACGCAAGGTACAATGTGAATGTCAAAGGCGTGCGGCATGATAGAACATC
GAGTTTCTTTGACATACCCGCTGTGACGCACCCGCACAACCATCCACACC
CACATCCGCACCCACATCCGCACCCGTACTGCTACAGATTTCCATCATCG
CCACCCGCGGGGCATCTGAAAAAGAGCGACG

BO05254.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6892-PB 1923 Ets96B-RB 1..845 17..861 4225 100 Plus
CG6892-PA 1914 Ets96B-RA 208..691 62..545 2420 100 Plus
CG6892-PA 1914 Ets96B-RA 691..836 716..861 730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-RB 3003 CG6892-RB 364..1229 16..881 4285 99.8 Plus
Ets96B-RC 2804 CG6892-RC 210..1030 61..881 4060 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24792724..24793253 16..545 2650 100 Plus
3R 32079331 3R 24793378..24793549 545..716 860 100 Plus
3R 32079331 3R 24794323..24794444 716..837 610 100 Plus
3R 32079331 3R 24794593..24794639 835..881 190 93.6 Plus
Blast to na_te.dros performed on 2015-02-12 01:17:51 has no hits.

BO05254.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:14 Download gff for BO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6892-PB 1..865 17..881 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:09 Download gff for BO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6892-PB 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:42 Download gff for BO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 358..1229 9..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:48 Download gff for BO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 358..1229 9..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:48 Download gff for BO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24794596..24794639 838..881 95   Plus
3R 24792718..24793253 9..545 99 -> Plus
3R 24793379..24793549 546..716 100 -> Plus
3R 24794324..24794444 717..837 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:42 Download gff for BO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20618440..20618975 9..545 99 -> Plus
arm_3R 20619101..20619271 546..716 100 -> Plus
arm_3R 20620046..20620166 717..837 100 -> Plus
arm_3R 20620318..20620361 838..881 95   Plus

BO05254.complete Sequence

1954 bp assembled on 2008-08-14

GenBank Submission: FJ630007

> BO05254.complete
GAAGTTATCAGTCGACATGACAATTTCCTGGCGCGCCTTGTCTCATTTCC
TTATTCCGCAGAGCGACTACGGCGAGGCCAAGACGCACCTGGAGCAGCTG
CAGCAGACGCTCACGCACCTGGACCACCCGCACCACCACCACGCACACCA
TCCGCACCACCACCTGGGGCTCTACCATGGCGCCCTGCCCAACACATCCA
CCATAACCACAGACTCGGTGGTTTCCTGTGTCAGCTCCACACTGCCGGCG
GTGGCCAAGGCCATTTCCGCATCCTCCAGCTGCGATGGCCTGCAGTCGGA
GCGCAAAAAGTGCCCCATCAGCGATCTGGATTCAGGTGGTCATGGTCATG
GTCAGGGGCATGGCCTCATGGAGGCCATCTGCGCTGGCCAGAAGACGTCA
CCTATACCACCGCCGCCACCACCTTGCTGCTTGACCCTGGGCGAAAGCTC
ATCCTCGCCGAATCCCATCGCCACGGCCGCCTTGATGAACGCTTCCACCT
CCGGATCCTCGAGCGCAGGCGGAGCAAGTGCCTCTCTCTGCAACGATCTC
ACACGGGAATCTTCCTGGTACGCCCACCATCATCATCACCACCATCACCA
TCACCATCAGTTGCCCGACGAGCTGGTCATGTATGCCACGCCCACTCCCA
CGCCGGCAATCGGGAAATTCGGACTGGACACTTCCACCGAGGGTTACTTG
AACGCAAGGTACAATGTGAATGTCAAAGGCGTGCGGCATGATAGAACATC
GAGTTTCTTTGACATACCCGCTGTGACGCACCCGCACAACCATCCACACC
CACATCCGCACCCACATCCGCACCCGTACTGCTACAGATTTCCATCATCG
CCACCCGCGGGCATTCTGAAAAAGAGCGACGAAGAAGCAACCTCGGCCGC
CGTATACTGCAGCGACGTGTCCTCCGGACAGCACTTTCCGCACCACACAA
AGATCGAGCACGCGGACTCCACCACTACGGCGGCACAGCAGCAACAGCAG
CAGCAAGAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACA
CCAGCAACAACTGCAGCAAGCTGCTGCACTGCATCCGCACCACCATCACT
CCCACCATGGCCACCATGGCCATCAGCAGGCGGAGCAGCAGGCTCTCACC
CACTTGACGCCACTTCATGCCGCATCCGCTTTCAAATTTAGCCATACGGC
GGTCATATCCAGCTCAGCGGTATATGCCACGCCCTCGCACTACGCCCACC
AACAGCAGACGCAGTCTCAGTCCGTGTACAGGGATCTCTCGCCCACCACC
TTAGCAGCGGTCAGCGATGCAGATCTGAAGTACGACAGCGGTCCCTACAA
CGCGGCCATCTCATCCACCTATCCCTCCGCGCTGCGGCCCAATGTGGTGG
ACTCCACCACGTCCAGCGATGCGGAACTGCGCCTGGATCAGTTCTACGCC
AGCAATGGCATCTCCACCAGCAGCAACGGCCAGGCGATCAGCCAGCGCAG
GGGTTCGCTGCAGCTCTGGCAGTTTCTGGTGGCCCTCCTGGATGAGCCCA
CGACCAGTGCCAGTTGCATCGCCTGGACCGGTCGTGGCATGGAGTTCAAG
CTGATCGAGCCAGAGGAGGTGGCCCGGCGTTGGGGTCTCCAGAAGAATCG
ACCCGCCATGAACTACGACAAGTTATCTCGCAGTTTGCGCTACTACTACG
AGAAGGGTATCATGCAGAAAGTGAACGGAGAGCGCTACGTCTATCGGTTC
GTCTGCGATCCGGATGCGCTGTTCAACATGGCCTACGGTCACCTGACCAC
CGGTTCCGGCAAGGGTGACCAGCACCAGTTGACGCTGTCGCTGGCCAAGA
CGCCCCCGACATCCGGCGACTCCCAGACGCAATCCCCACGAGTCGCCAAG
TCGGAGTATTACGATACCGCCGCATTGCATAAATACGCAAGCTTTCTAGA
CCAT

BO05254.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-RB 1923 CG6892-PB 1..1920 17..1936 9600 100 Plus
Ets96B-RC 1896 CG6892-PC 18..1893 61..1936 9380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-RB 3003 CG6892-RB 364..2284 16..1936 9605 100 Plus
Ets96B-RC 2804 CG6892-RC 210..2085 61..1936 9380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24796121..24796795 883..1557 3375 100 Plus
3R 32079331 3R 24792724..24793253 16..545 2650 100 Plus
3R 32079331 3R 24796855..24797236 1555..1936 1910 100 Plus
3R 32079331 3R 24793378..24793549 545..716 860 100 Plus
3R 32079331 3R 24794323..24794444 716..837 610 100 Plus
3R 32079331 3R 24794593..24794642 835..884 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:36:47 has no hits.

BO05254.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:02 Download gff for BO05254.complete
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 358..2287 9..1940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:58 Download gff for BO05254.complete
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 365..2284 17..1938 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:30 Download gff for BO05254.complete
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 365..2284 17..1938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:06 Download gff for BO05254.complete
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 365..2284 17..1938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:06 Download gff for BO05254.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24792725..24793253 17..545 100 -> Plus
3R 24793379..24793549 546..716 100 -> Plus
3R 24794324..24794444 717..837 100 -> Plus
3R 24794596..24794642 838..884 100 -> Plus
3R 24796123..24796795 885..1557 100 -> Plus
3R 24796858..24797236 1558..1938 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:58 Download gff for BO05254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20618447..20618975 17..545 100 -> Plus
arm_3R 20619101..20619271 546..716 100 -> Plus
arm_3R 20620046..20620166 717..837 100 -> Plus
arm_3R 20620318..20620364 838..884 100 -> Plus
arm_3R 20621845..20622517 885..1557 100 -> Plus
arm_3R 20622580..20622958 1558..1938 99   Plus

BO05254.pep Sequence

Translation from 16 to 1954

> BO05254.pep
MTISWRALSHFLIPQSDYGEAKTHLEQLQQTLTHLDHPHHHHAHHPHHHL
GLYHGALPNTSTITTDSVVSCVSSTLPAVAKAISASSSCDGLQSERKKCP
ISDLDSGGHGHGQGHGLMEAICAGQKTSPIPPPPPPCCLTLGESSSSPNP
IATAALMNASTSGSSSAGGASASLCNDLTRESSWYAHHHHHHHHHHHQLP
DELVMYATPTPTPAIGKFGLDTSTEGYLNARYNVNVKGVRHDRTSSFFDI
PAVTHPHNHPHPHPHPHPHPYCYRFPSSPPAGILKKSDEEATSAAVYCSD
VSSGQHFPHHTKIEHADSTTTAAQQQQQQQEQQQQQQQQQQQQQHQQQLQ
QAAALHPHHHHSHHGHHGHQQAEQQALTHLTPLHAASAFKFSHTAVISSS
AVYATPSHYAHQQQTQSQSVYRDLSPTTLAAVSDADLKYDSGPYNAAISS
TYPSALRPNVVDSTTSSDAELRLDQFYASNGISTSSNGQAISQRRGSLQL
WQFLVALLDEPTTSASCIAWTGRGMEFKLIEPEEVARRWGLQKNRPAMNY
DKLSRSLRYYYEKGIMQKVNGERYVYRFVCDPDALFNMAYGHLTTGSGKG
DQHQLTLSLAKTPPTSGDSQTQSPRVAKSEYYDTAALHKYASFLDH

BO05254.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-PB 640 CG6892-PB 1..640 1..640 3464 100 Plus
Ets96B-PC 631 CG6892-PC 7..631 16..640 3384 100 Plus
pnt-PC 623 CG17077-PC 455..597 443..581 309 45.2 Plus
pnt-PE 625 CG17077-PE 457..599 443..581 309 45.2 Plus
Ets65A-PB 257 CG7018-PB 26..163 433..578 300 44.5 Plus