Clone Sequence Records
BO05308.3prime Sequence
977 bp (815 high quality bases) assembled on 2005-12-02
> BO05308.3prime
ATGGTCTAGAAAGCTTGCCAGACTGCTACGACCCGAACGACCAACAGCGC
CGACGGCACCATTGGGTCGATTGTGTCGACGCTTGTGCAGATAGAGGCCG
GCCGCTTGGGCAAATGCCGAACCGCATATCTGGCAGACGTAGCGCTTGAT
CTTGTCGTGGATCTGTTTGTGGTTCTGCAGATTCTTTGTCGACTTGAACG
TCTTGCCGCAAATGTCGCACTTGAACTCCTCGTTGCTGTAGTGCTGCTTC
AGGTGCTCGAACAGGCTGTTGCGCGCCACAAACGATTTATTGCACTGCGG
ATAGTCGCATTTATAGCACCGCTCCCGCTCATCCTGGTGGACAATTCGAT
GCGCATTCAGGTGGCCCGGCGTGGCGAAACTGCGGCGACACACATCGCAT
CCATACGGCTTGGCAATGTCAGTGCCACCACCACCAGAACCACCACCACC
ACCGCCGCCAATTCGATCATCATCGTCGACCATGTCATCGGTTGCTTTCG
CAGCGTGCCTCCTTTTGCGGCGACTGCCGCTGCCTCTGGACTCCTCGCCC
TCGACTCCGATCTCGTCATCTCCCAGGCCGCCCTCCATGATGCTGTGATT
AAGCGCCAGCGAGGGCAGAAACAGCTCCTCGTTATGGCGCCGCAGGTGCT
CATCATAGTTGGCCTTCTCGCGGAAACTGGCCGTGCACAATTCGCAGTTG
AACTTGATCTCGGTTACGCCGCCCAAATGCAACTGCTTGTGGTTATCGAA
CTCCTGGGCATTGTGGAACTGTATGCTGCAGATGTTGCAATAGTAACCGC
CACCCAAACTAGGCTGGTGGGTGAGCATGTGGAGGTCCAGTTCCCTGAGT
GTTTGCACTATTTTCGGGCAGTGTGCGCACTTAAATGGCGGAATGTCGTC
GTCCATAAAGTGCATCTGATCGTAGTACAAATAGTTCGCAATGAATTTCT
TGCCCAACCTCTCGCTGTTAAGGCGCT
BO05308.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8944-PB | 2289 | CG8944-RB | 1328..2286 | 977..19 | 4745 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8944-RB | 4350 | CG8944-RB | 1517..2475 | 977..19 | 4765 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15743218..15744176 | 19..977 | 4765 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:50:44 has no hits.
BO05308.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:20 Download gff for
BO05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-PB | 1328..2289 | 16..977 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:17 Download gff for
BO05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-PB | 1328..2289 | 16..977 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:56 Download gff for
BO05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 1517..2475 | 19..977 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:00 Download gff for
BO05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 1517..2475 | 19..977 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:00 Download gff for
BO05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15743218..15744176 | 19..977 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:56 Download gff for
BO05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15637251..15638209 | 19..977 | 99 | | Plus |
BO05308.5prime Sequence
844 bp (843 high quality bases) assembled on 2005-12-02
> BO05308.5prime
GAAGTTATCAGTCGACATGAGTGTCCTGGCGTATCCACGTACCAACGACG
AGGAGATTTTCCGTCACTGCACCAAGGACTGCGGCATGGTGACGGCCACA
GATGACTTCCAGTACTTCGCCCTGCGTTGCATCTTCTGCAGCGAGAAGTT
TCTCTACTTCGACTCCTTCATCGGCCACATGCAGACAGTTCACCTGGGCG
ACCAGTCCGTGGCGAATACCTCCTCCCGTCTCCCCTTCAATCTCGGCGAG
CCCATGTCCCTGTCCGGTCGTAATGGGGATCTGCCCAACTTCCACGAGAT
CGAAGACTTAACGGACGCGGACACAGCGCTGCTGGAGCCCCAAATGGTCA
TCAAACAAGAGCTCCAGGATCTGCCCTGCAGCGATGATGATGTGGTCGCC
GGCGAAGAAGACGACGATGAGCAACGGCTGAACGATTCCGAGGCCGATGA
GGACGAGGCCATATTACCCGAAAGCGATGTACCGGTGGTCAGTTCCAAGA
CGCGGGCACGCAAAAAGGTCACAAAGCAGCGCCAGAGGGACATGTCTAGC
GAGCTTCTCATCGCCGGTGACGGCGATTCATCCATGGACGACTACGGTGA
TCCGGATCACAGCTATATGGACGACAATTCCGGAGAGTACATGGACTTTG
CTGGATTCGACGGCGTTAACCACAGTGGTTTCGGAACCGAATCGGACTTT
CTCAGCTATGATGAGATGGTGGAGGAGTCCCTGCTGGGACGCGACCGGGA
GGTTACGATGCACATCAAGGACCGCAAGATGATCCAGTTTCTCATCCACT
CGTATCAGCGCAACCCCTTTTTGTGGGGACACGGCAATGCACAG
BO05308.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8944-PA | 1143 | CG8944-RA | 1..828 | 17..844 | 4090 | 99.7 | Plus |
| CG8944-PB | 2289 | CG8944-RB | 1..828 | 17..844 | 4090 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8944-RB | 4350 | CG8944-RB | 190..1017 | 17..844 | 4110 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15745320..15746042 | 739..17 | 3615 | 100 | Minus |
| X | 23542271 | X | 15745065..15745169 | 844..740 | 495 | 98.1 | Minus |
Blast to na_te.dros performed 2015-02-12 06:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 516..619 | 361..461 | 108 | 57.7 | Plus |
BO05308.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:21 Download gff for
BO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:18 Download gff for
BO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-PB | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:46 Download gff for
BO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 186..1017 | 13..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:56 Download gff for
BO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 186..1017 | 13..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:56 Download gff for
BO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15745065..15745169 | 740..844 | 98 | <- | Minus |
| X | 15745320..15746044 | 13..739 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:46 Download gff for
BO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15639098..15639202 | 740..844 | 98 | <- | Minus |
| arm_X | 15639353..15640077 | 13..739 | 99 | | Minus |
BO05308.complete Sequence
2320 bp assembled on 2008-08-14
GenBank Submission: FJ630009
> BO05308.complete
GAAGTTATCAGTCGACATGAGTGTCCTGGCGTATCCACGTACCAACGACG
AGGAGATTTTCCGTCACTGCACCAAGGACTGCGGCATGGTGACGGCCACA
GATGACTTCCAGTACTTCGCCCTGCGTTGCATCTTCTGCAGCGAGAAGTT
TCTCTACTTCGACTCCTTCATCGGCCACATGCAGACAGTTCACCTGGGCG
ACCAGTCCGTGGCGAATACCTCCTCCCGTCTCCCCTTCAATCTCGGCGAG
CCCATGTCCCTGTCCGGTCGTAATGGGGATCTGCCCAACTTCCACGAGAT
CGAAGACTTAACGGACGCGGACACAGCGCTGCTGGAGCCCCAAATGGTCA
TCAAACAAGAGCTCCAGGATCTGCCCTGCAGCGATGATGATGTGGTCGCC
GGCGAAGAAGACGACGATGAGCAACGGCTGAACGATTCCGAGGCCGATGA
GGACGAGGCCATATTACCCGAAAGCGATGTACCGGTGGTCAGTTCCAAGA
CGCGGGCACGCAAAAAGGTCACAAAGCAGCGCCAGAGGGACATGTCTAGC
GAGCTTCTCATCGCCGGTGACGGCGATTCATCCATGGACGACTACGGTGA
TCCGGATCACAGCTATATGGACGACAATTCCGGAGAGTACATGGACTTTG
CTGGATTCGACGGCGTTAACCACAGTGGTTTCGGAACCGAATCGGACTTT
CTCAGCTATGATGAGATGGTGGAGGAGTCCCTGCTGGGACGCGACCGGGA
GGTTACGATGCACATCAAGGACCGCAAGATGATCCAGTTTCTCATCCACT
CGTATCAGCGCAACCCCTTTTTGTGGGACCACGGCAATGCACAGTTCCGG
GATCGCGTTAAGCGCGCCCGCTTCCTCGACTGGATTGTGCTGGAGTTCAA
GAGCCGGTTTAACATCTCGCTGGCCAAGGACGCCATCACCCGTAAGTGGG
ACAACCTGCGCACGGTATACAAGCGGGAGTGCAATCGCATGGCTCTGGAG
AAGACCAACATCAGTACGCTGTGGTACTTCAAGGAGCTGCACTTCCTCAA
CGAGGTATACAGCTACAACGATAAGATGTCCGATGCTGTTGTTAAGGAAA
CCTCCTATCGCCGCCGCTTCTCGGCCATTTGGAACGATACGTCTACTGCC
AAGCTGCTGAGCATGGTGAAGCGGTACCAGTGCTTTTACAACCGCTTCGA
TCCCGACTACCGCAGCAAGGAGCGACGCGGCGAGGGACTCCATCAGATGG
CCATTGAACTGCAGCAGCTGATCGATGTGACCACCATCCAGATATCAAAG
CGCATTTCCCAGCTGCGATTCGATTACTCCAAACAGAAGATGGAGCGCCT
TAACAGCGAGAGGCTGGGCAAGAAATTCATTGCGAACTATTTGTACTACG
ATCAGATGCACTTTATGGACGACGACATTCCGCCATTTAAGTGCGCACAC
TGCCCGGAAATAGTGCAAACACTCAGGGAACTGGACCTCCACATGCTCAC
CCACCAGCCTAGTTTGGGTGGCGGTTACTATTGCAACATCTGCAGCATAC
AGTTCCACAATGCCCAGGAGTTCGATAACCACAAGCAGTTGCATTTGGGC
GGCGTAACCGAGATCAAGTTCAACTGCGAATTGTGCACGGCCAGTTTCCG
CGAGAAGGCCAACTATGATGAGCACCTGCGGCGCCATAACGAGGAGCTGT
TTCTGCCCTCGCTGGCGCTTAATCACAGCATCATGGAGGGCGGCCTGGGA
GATGACGAGATCGGAGTCGAGGGCGAGGAGTCCAGAGGCAGCGGCAGTCG
CCGCAAAAGGAGGCACGCTGCGAAAGCAACCGATGACATGGTCGACGATG
ATGATCGAATTGGCGGCGGTGGTGGTGGTGGTTCTGGTGGTGGTGGCACT
GACATTGCCAAGCCGTATGGATGCGATGTGTGTCGCCGCAGTTTCGCCAC
GCCGGGCCACCTGAATGCGCATCGAATTGTCCACCAGGATGAGCGGGAGC
GGTGCTATAAATGCGACTATCCGCAGTGCAATAAATCGTTTGTGGCGCGC
AACAGCCTGTTCGAGCACCTGAAGCAGCACTACAGCAACGAGGAGTTCAA
GTGCGACATTTGCGGCAAGACGTTCAAGTCGACAAAGAATCTGCAGAACC
ACAAACAGATCCACGACAAGATCAAGCGCTACGTCTGCCAGATATGCGGT
TCGGCATTTGCCCAAGCGGCCGGCCTCTATCTGCACAAGCGTCGACACAA
TCGACCCAATGGTGCCGTCGGCGCTGTTGGTCGTTCGGGTCGTAGCAGTC
TGGCAAGCTTTCTAGACCAT
BO05308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8944-RB | 2289 | CG8944-PB | 1..2286 | 17..2302 | 11430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8944-RB | 4350 | CG8944-RB | 190..2475 | 17..2302 | 11430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15743218..15744425 | 2302..1095 | 6040 | 100 | Minus |
| X | 23542271 | X | 15745320..15746042 | 739..17 | 3615 | 100 | Minus |
| X | 23542271 | X | 15744812..15745169 | 1097..740 | 1790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:35:47 has no hits.
BO05308.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:40 Download gff for
BO05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 162..2451 | 13..2302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:26 Download gff for
BO05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 190..2475 | 17..2304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:57 Download gff for
BO05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 166..2451 | 17..2304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:30 Download gff for
BO05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 190..2475 | 17..2304 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:30 Download gff for
BO05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15743215..15744423 | 1097..2304 | 99 | <- | Minus |
| X | 15744813..15745169 | 740..1096 | 100 | <- | Minus |
| X | 15745320..15746042 | 17..739 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:26 Download gff for
BO05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15637248..15638456 | 1097..2304 | 99 | <- | Minus |
| arm_X | 15638846..15639202 | 740..1096 | 100 | <- | Minus |
| arm_X | 15639353..15640075 | 17..739 | 100 | | Minus |
BO05308.pep Sequence
Translation from 16 to 2320
> BO05308.pep
MSVLAYPRTNDEEIFRHCTKDCGMVTATDDFQYFALRCIFCSEKFLYFDS
FIGHMQTVHLGDQSVANTSSRLPFNLGEPMSLSGRNGDLPNFHEIEDLTD
ADTALLEPQMVIKQELQDLPCSDDDVVAGEEDDDEQRLNDSEADEDEAIL
PESDVPVVSSKTRARKKVTKQRQRDMSSELLIAGDGDSSMDDYGDPDHSY
MDDNSGEYMDFAGFDGVNHSGFGTESDFLSYDEMVEESLLGRDREVTMHI
KDRKMIQFLIHSYQRNPFLWDHGNAQFRDRVKRARFLDWIVLEFKSRFNI
SLAKDAITRKWDNLRTVYKRECNRMALEKTNISTLWYFKELHFLNEVYSY
NDKMSDAVVKETSYRRRFSAIWNDTSTAKLLSMVKRYQCFYNRFDPDYRS
KERRGEGLHQMAIELQQLIDVTTIQISKRISQLRFDYSKQKMERLNSERL
GKKFIANYLYYDQMHFMDDDIPPFKCAHCPEIVQTLRELDLHMLTHQPSL
GGGYYCNICSIQFHNAQEFDNHKQLHLGGVTEIKFNCELCTASFREKANY
DEHLRRHNEELFLPSLALNHSIMEGGLGDDEIGVEGEESRGSGSRRKRRH
AAKATDDMVDDDDRIGGGGGGGSGGGGTDIAKPYGCDVCRRSFATPGHLN
AHRIVHQDERERCYKCDYPQCNKSFVARNSLFEHLKQHYSNEEFKCDICG
KTFKSTKNLQNHKQIHDKIKRYVCQICGSAFAQAAGLYLHKRRHNRPNGA
VGAVGRSGRSSLASFLDH
BO05308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8944-PB | 762 | CG8944-PB | 1..762 | 1..762 | 4091 | 100 | Plus |
| rgr-PA | 856 | CG8643-PA | 428..854 | 254..752 | 354 | 24.3 | Plus |
| rgr-PC | 889 | CG8643-PC | 461..887 | 254..752 | 354 | 24.3 | Plus |
| CG4360-PB | 385 | CG4360-PB | 135..385 | 467..766 | 233 | 25.2 | Plus |
| CG18262-PA | 469 | CG18262-PA | 172..426 | 474..757 | 231 | 28.6 | Plus |
