Clone BO05317 Report

Search the DGRC for BO05317

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:53
Well:17
Vector:pDNR-Dual
Associated Gene/Transcriptems-RA
Protein status:BO05317.pep: validated full length
Sequenced Size:1516

Clone Sequence Records

BO05317.3prime Sequence

949 bp (837 high quality bases) assembled on 2005-12-02

> BO05317.3prime
ATGGTCTAGAAAGCTTGCGTGGCTGGCGTCCAGCTCGTGCTCCTCATCGC
TGGGACACTCGTCCATCTCCATGTCGATCAGTTCGTCGTCGTCCTCGTCG
CCGCTGCCGTTGTGCATATTCCGCTGCGATCCTCCCTCGCCGCCCTTCTC
ATCCTCCTGCTGCATCCGCTTGTGCTTGGTGCGTCGGTTCTGGAACCACA
CCTTCACCTGCGTCTCGGACAGATTGAGGTTTTGGGCCAGGGCCTTTCTC
TCTGCCCCCACTACGTACTGGTTGCTCTCAAAGGCGTGCTCCAGCTTCAG
CAGCTGCGACGGCGAGAAGGCGGTGCGGATGCGTTTCGGTTTGCGGAACG
GGGGCACCAGGAAACTTCCAGGGAATCGGTGTGGGAAGATCCTTCCATGG
CGGCTGAGCAGCCAGGGGTACAGCTGATAGCTATCCCTGGCCATGCCTGG
ATTGGGCATAAACTGGGCGGCATGGGGCGGCAGGCCGGCGGCAGCAGCGG
CGGCGGCCGCTGGACCAAGCACATGACCCGCTTGCAGGGCGGCGGCCATC
TGGAACTGGGCAGCGGCAATGAGATGCGGATTGTGCTGAGGCGGCAGCTC
CGGCGGAGCGTTGATGTAGGGCGGCAGCGCCTTGATGTCCGGCAAGCCGG
GCTGACCCTGCGGCATCGGTGGTCCTCCGGGTCCCATGGGAAAGGGGCGA
ACGAGTCCAGCGGGCGGCATGCCCGGCATCATCATGGGTCCAGCTCCTCC
GGGATGCATCATGGCGGGCTTTGGATAATTCGGGGGCGGCTGCTGCTGTT
GCTGCTGTGGCGGTGTGGCATGTGGACTGCTGATCAGCAGAGTGGGCGAA
GACGAGGGCTGCGAGGACTGGGGGCTCACGGATTTGGGAGGCGTGTGCGG
TGGCTGGATGCGCTGGGCGGGGATCTCGGCCTGCTCCATGGCAGGTGGT

BO05317.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2988-PA 1485 ems-RA 552..1482 949..19 4605 99.7 Minus
CG9930-PA 1575 E5-RA 1033..1093 213..153 230 95 Minus
CG9930-PA 1575 E5-RA 919..992 327..254 170 89.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
ems-RA 2478 CG2988-RA 878..1808 949..19 4625 99.8 Minus
E5-RA 2122 CG9930-RA 1206..1487 437..153 605 81.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13902730..13903315 949..364 2900 99.7 Minus
3R 32079331 3R 13903604..13903950 365..19 1735 100 Minus
3R 32079331 3R 13868595..13868755 204..364 295 78.9 Plus
3R 32079331 3R 13867980..13868036 153..209 240 94.7 Plus
Blast to na_te.dros performed 2015-02-13 02:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7937..7992 834..779 118 67.9 Minus
TART-C 11124 TART-C TARTC 11124bp 9381..9436 834..779 118 67.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6875 834..768 115 69.1 Minus

BO05317.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:28 Download gff for BO05317.3prime
Subject Subject Range Query Range Percent Splice Strand
ems-PA 552..1485 16..949 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:28 Download gff for BO05317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2988-PA 552..1485 16..949 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:36 Download gff for BO05317.3prime
Subject Subject Range Query Range Percent Splice Strand
ems-RA 872..1802 19..949 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:58 Download gff for BO05317.3prime
Subject Subject Range Query Range Percent Splice Strand
ems-RA 878..1808 19..949 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:58 Download gff for BO05317.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13902730..13903313 366..949 99 -> Minus
3R 13903604..13903950 19..365 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:36 Download gff for BO05317.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9728452..9729035 366..949 99 -> Minus
arm_3R 9729326..9729672 19..365 100   Minus

BO05317.5prime Sequence

956 bp (882 high quality bases) assembled on 2005-12-02

> BO05317.5prime
GAAGTTATCAGTCGACATGACTAAGATGATTCCGCCGGTTCCCACCGCCG
CTGCAGCCGTCATGATGCCCACACCAAAGCAGAAGATCGGTTTCAGCATC
GAGTCCATTGTGGGCAATGATGTCAGCACCGCCGGCGGCAATTCGACGCC
CGATCTATCCGGTCCCCAGAGTCCGCCGCCCGGCGAGCGCAATGTGCCCG
GTTCGCCGCCCCAAACGCCACCAGCCACACTCACCTTGATCCCAGGCTCG
CCCCCGCACCATCTGATGGCTCCTCCTGCCCACGGACTGCCCTATCCGCA
TCCGCATGCTCAGCAGCAGCATTTGCAGGCACCACATCCGCATCCGCATC
TATCGCCTGCGCAGCAACATGTGCTCCACCAGCACCTCCTCATGCAGCAG
CAACATCCGGGCACACCCAAGAGCCACCAGGACATTCAGGAGCTGCTGCA
GAGGCTGCACCACAATGCCGCCATGGCCAGCGGCCTGAGTCCGCTGCAGA
CACGCCTCTCCCCCGAAACGGAGCAGCCCCAGATGGCCGTCTCCCTCAAG
CGGGAACGCTCACCTGCACCACCTGCCATGGAGCAGGCCGAGAATCCCGC
CCAGCGCATCCAGCCACCGCACACGCCTCCCAAATCCGTGAGCCCCCAGT
CCTCGCAGCCCTCGTCTTCGCCCACTCTGCTGATCAGCAGTCCACATGCC
ACACCGCCACAGCAGCAACAGCAGCAGCCGCCCCCGAATTATCCAAAGCC
CGCCATGATGCATCCCGGAGGAGCTGGACCCATGATGATGCCGGGCATGC
CGCCCGCTGGACTCGTTCGCCCCTTTCCCATGGGACCCGGAGGACCACCG
ATGCCGCAGGGTCAGCCCGGCTTGCCGGACATCAAGGCGCTGCCGCCCTA
CATCAACGCTCCGCCGGAGCTGGCGCCTCAGCACAATCCGCATCTCATTG
CCGCTG

BO05317.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2988-PA 1485 ems-RA 1..940 17..956 4675 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
ems-RA 2478 CG2988-RA 327..1266 17..956 4685 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13902179..13903118 17..956 4685 99.9 Plus
Blast to na_te.dros performed 2015-02-12 10:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6738..6897 294..462 176 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6745..6945 286..491 172 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6870 299..462 164 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6939 294..450 163 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2524 294..465 161 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2467 294..450 154 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2286..2511 250..484 153 56.7 Plus
roo 9092 roo DM_ROO 9092bp 1059..1151 312..407 139 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2549 299..498 135 54.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6922 286..409 133 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6889 361..532 125 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2397..2510 299..409 120 60.9 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7937..7992 683..738 118 67.9 Plus
TART-C 11124 TART-C TARTC 11124bp 9381..9436 683..738 118 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6945 294..408 116 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6875 683..749 115 69.1 Plus

BO05317.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:29 Download gff for BO05317.5prime
Subject Subject Range Query Range Percent Splice Strand
ems-PA 1..940 17..956 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:29 Download gff for BO05317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2988-PA 1..940 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:17 Download gff for BO05317.5prime
Subject Subject Range Query Range Percent Splice Strand
ems-RA 315..1260 11..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:54 Download gff for BO05317.5prime
Subject Subject Range Query Range Percent Splice Strand
ems-RA 321..1266 11..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:54 Download gff for BO05317.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13902173..13903118 11..956 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:17 Download gff for BO05317.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9727895..9728840 11..956 99   Plus

BO05317.complete Sequence

1516 bp (1516 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ630011

> BO05317.complete
GAAGTTATCAGTCGACATGACTAAGATGATTCCGCCGGTTCCCACCGCCG
CTGCAGCCGTCATGATGCCCACACCAAAGCAGAAGATCGGTTTCAGCATC
GAGTCCATTGTGGGCAATGATGTCAGCACCGCCGGCGGCAATTCGACGCC
CGATCTATCCGGTCCCCAGAGTCCGCCGCCCGGCGAGCGCAATGTGCCCG
GTTCGCCGCCCCAAACGCCACCAGCCACACTCACCTTGATCCCAGGCTCG
CCCCCGCACCATCTGATGGCTCCTCCTGCCCACGGACTGCCCTATCCGCA
TCCGCATGCTCAGCAGCAGCATTTGCAGGCACCACATCCGCATCCGCATC
TATCGCCTGCGCAGCAACATGTGCTCCACCAGCACCTCCTCATGCAGCAG
CAACATCCGGGCACACCCAAGAGCCACCAGGACATTCAGGAGCTGCTGCA
GAGGCTGCACCACAATGCCGCCATGGCCAGCGGCCTGAGTCCGCTGCAGA
CACGCCTCTCCCCCGAAACGGAGCAGCCCCAGATGGCCGTCTCCCTCAAG
CGGGAACGCTCACCTGCACCACCTGCCATGGAGCAGGCCGAGAATCCCGC
CCAGCGCATCCAGCCACCGCACACGCCTCCCAAATCCGTGAGCCCCCAGT
CCTCGCAGCCCTCGTCTTCGCCCACTCTGCTGATCAGCAGTCCACATGCC
ACACCGCCACAGCAGCAACAGCAGCAGCCGCCCCCGAATTATCCAAAGCC
CGCCATGATGCATCCCGGAGGAGCTGGACCCATGATGATGCCGGGCATGC
CGCCCGCTGGACTCGTTCGCCCCTTTCCCATGGGACCCGGAGGACCACCG
ATGCCGCAGGGTCAGCCCGGCTTGCCGGACATCAAGGCGCTGCCGCCCTA
CATCAACGCTCCGCCGGAGCTGCCGCCTCAGCACAATCCGCATCTCATTG
CCGCTGCCCAGTTCCAGATGGCCGCCGCCCTGCAAGCGGGTCATGTGCTT
GGTCCAGCGGCCGCCGCCGCTGCTGCCGCCGGCCTGCCGCCCCATGCCGC
CCAGTTTATGCCCAATCCAGGCATGGCCAGGGATAGCTATCAGCTGTACC
CCTGGCTGCTCAGCCGCCATGGAAGGATCTTCCCACACCGATTCCCTGGA
AGTTTCCTGGTGCCCCCGTTCCGCAAACCGAAACGCATCCGCACCGCCTT
CTCGCCGTCGCAGCTGCTGAAGCTGGAGCACGCCTTTGAGAGCAACCAGT
ACGTAGTGGGGGCAGAGAGAAAGGCCCTGGCCCAAAACCTCAATCTGTCC
GAGACGCAGGTGAAGGTGTGGTTCCAGAACCGACGCACCAAGCACAAGCG
GATGCAGCAGGAGGATGAGAAGGGCGGCGAGGGAGGATCGCAGCGGAATA
TGCACAACGGCAGCGGCGACGAGGACGACGACGAACTGATCGACATGGAG
ATGGACGAGTGTCCCAGCGATGAGGAGCACGAGCTGGACGCCAGCCACGC
AAGCTTTCTAGACCAT

BO05317.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
ems-RA 1485 CG2988-PA 1..1482 17..1498 7410 100 Plus
E5-RA 1575 CG9930-PA 812..1093 1080..1364 580 81.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
ems-RA 2478 CG2988-RA 327..1808 17..1498 7410 100 Plus
E5-RA 2122 CG9930-RA 1206..1487 1080..1364 580 81.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13902179..13903315 17..1153 5685 100 Plus
3R 32079331 3R 13903604..13903950 1152..1498 1735 100 Plus
3R 32079331 3R 13868595..13868755 1313..1153 295 78.9 Minus
3R 32079331 3R 13867980..13868036 1364..1308 240 94.7 Minus
Blast to na_te.dros performed 2014-11-28 00:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6738..6897 294..462 176 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6745..6945 286..491 172 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6870 299..462 164 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6939 294..450 163 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2524 294..465 161 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2467 294..450 154 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2286..2511 250..484 153 56.7 Plus
roo 9092 roo DM_ROO 9092bp 1059..1151 312..407 139 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2549 299..498 135 54.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6922 286..409 133 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6889 361..532 125 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2397..2510 299..409 120 60.9 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7937..7992 683..738 118 67.9 Plus
TART-C 11124 TART-C TARTC 11124bp 9381..9436 683..738 118 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6945 294..408 116 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6875 683..749 115 69.1 Plus

BO05317.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:21 Download gff for BO05317.complete
Subject Subject Range Query Range Percent Splice Strand
ems-RA 1..1485 17..1501 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:02 Download gff for BO05317.complete
Subject Subject Range Query Range Percent Splice Strand
ems-RA 315..1802 11..1498 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:09 Download gff for BO05317.complete
Subject Subject Range Query Range Percent Splice Strand
ems-RA 321..1802 17..1500 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:21 Download gff for BO05317.complete
Subject Subject Range Query Range Percent Splice Strand
ems-RA 315..1802 11..1498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:30 Download gff for BO05317.complete
Subject Subject Range Query Range Percent Splice Strand
ems-RA 327..1808 17..1500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:30 Download gff for BO05317.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13902179..13903313 17..1151 100 -> Plus
3R 13903604..13903950 1152..1500 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:09 Download gff for BO05317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9727901..9729035 17..1151 100 -> Plus
arm_3R 9729326..9729672 1152..1500 99   Plus

BO05317.pep Sequence

Translation from 16 to 1516

> BO05317.pep
MTKMIPPVPTAAAAVMMPTPKQKIGFSIESIVGNDVSTAGGNSTPDLSGP
QSPPPGERNVPGSPPQTPPATLTLIPGSPPHHLMAPPAHGLPYPHPHAQQ
QHLQAPHPHPHLSPAQQHVLHQHLLMQQQHPGTPKSHQDIQELLQRLHHN
AAMASGLSPLQTRLSPETEQPQMAVSLKRERSPAPPAMEQAENPAQRIQP
PHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHP
GGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPP
ELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPN
PGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQL
LKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQED
EKGGEGGSQRNMHNGSGDEDDDELIDMEMDECPSDEEHELDASHASFLDH

BO05317.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
ems-PA 494 CG2988-PA 1..494 1..494 2678 100 Plus
E5-PA 524 CG9930-PA 28..410 151..487 524 39.7 Plus
CG10555-PB 926 CG10555-PB 216..527 40..352 223 29.3 Plus
CG10555-PA 926 CG10555-PA 216..527 40..352 223 29.3 Plus
Antp-PJ 378 CG1028-PJ 43..370 95..469 204 25.1 Plus