Clone BO05326 Report

Search the DGRC for BO05326

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:53
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptHGTX-RA
Protein status:BO05326.pep: full length peptide match
Sequenced Size:1573

Clone Sequence Records

BO05326.3prime Sequence

907 bp (865 high quality bases) assembled on 2005-12-02

> BO05326.3prime
ATGGTCTAGAAAGCTTGCATGACGATAATTATCCTGCTGCTGCTGCGAGG
ACCCAGAACTGTTGCTGCGACATCTCTTGTTCTGAGCCGGGGACTCGCCC
ATATCGAGACTTTCGTTATCGCTATCCATGGTCTCGCTGCAATCGCCATC
GTTATCGCCGCCCATATCGTCCTGTTTCCTTTTGGCCGTGGCCATTTCCG
CCGCATGCCGTTTGCGCCATTTGGTGCGACGATTCTGGAACCAGACCTTA
ACCTGCGACTCGGACATTCCTAAGGCGTAAGCGAGCTTGGCACGCTCTGG
TCCGGCCAGATACTTGGTTTGCTCGAATGTCTTCTCCAGGGCGAAGATCT
GCTGACCACTGAATGTTGGGCGGGTGTGTTTCTTTTTGCCATCCTTGTCG
TTCGATGGATGATGCTGATGCGATTGAGACAGATTGGCGGACATCGTGTT
GGAGAGCCGTTCGCGCCACGCGATGGGATTGGCCACCAGTCCCTGTAATC
CTGGCCAGTACAGGTGCGTGCGGTCCACTATGTGTCCGGCGTGGGTCTTC
AGTGGCGCCCCTTGGCTCTGCGATAGATACTGGGCCATTCCCGCTGCTGC
GGCGGCGATCGAGAAGCGGGGAATGCCAGCTCCTGTTAAAGCACTTAGAC
CCGCCGATGTCACCGGCGGTGGTTTGGAGAGGATGGTATCGATGCCGTGC
GGATTGGGTGCACCCTGGCTGTTGGTGTTCGTAGTCGTGGTGGAGGACGA
CGATGAGCTGCCACCGGATCCGCGATCACTGATCAAATGCGAATTCGGGC
TGTGGCTATAGGACAAGCCATTTGCCGACGCCGACGATCCACCGACTCCT
TGACCCTTCATTTCCGTGGTCATCGAGTGAAGAGCGGCCAAGCGGGGACC
GAAAAAC

BO05326.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13475-PA 1542 HGTX-RA 668..1539 890..19 4360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 3014 CG13475-RA 1479..2366 906..19 4380 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14597786..14598062 630..906 1325 98.6 Plus
3L 28110227 3L 14583870..14584099 19..248 1150 100 Plus
3L 28110227 3L 14589999..14590197 245..443 995 100 Plus
3L 28110227 3L 14595890..14596077 444..631 940 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:48:14 has no hits.

BO05326.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:34 Download gff for BO05326.3prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-PA 650..1542 15..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:38 Download gff for BO05326.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13475-PA 650..1542 15..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:25 Download gff for BO05326.3prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 1477..2369 15..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:48 Download gff for BO05326.3prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 1477..2369 15..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:48 Download gff for BO05326.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14583866..14584097 15..246 99 <- Plus
3L 14590001..14590197 247..443 100 <- Plus
3L 14595890..14596075 444..629 100 <- Plus
3L 14597786..14598064 630..907 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:25 Download gff for BO05326.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14576966..14577197 15..246 99 <- Plus
arm_3L 14583101..14583297 247..443 100 <- Plus
arm_3L 14588990..14589175 444..629 100 <- Plus
arm_3L 14590886..14591164 630..907 98   Plus

BO05326.5prime Sequence

954 bp (805 high quality bases) assembled on 2005-12-02

> BO05326.5prime
GAAGTTATCAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATA
GTTTTGCGGCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCAT
CATTTGGCGGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGC
GATGGCGGCGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAG
CGGCGGCAGCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAAT
AGCAGTAACAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACA
TGGCGGAGGTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCG
CCTCTTCTAGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACAC
AATTCCAGTCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAG
GAGCAGCGGAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCAC
CGCCGCAGGGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGG
GCAAAGTTCCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGC
CAACCATGCCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACC
ACAAGCTCCCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCG
ATGACCACGGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGC
AAATGGCTTGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATC
GCGGATCCGGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACC
AACAGCCAGGGTGCACCCAATCCGCACGGCATCGATACCATCCTCTCCAA
ACACCGCCGGTGACATCGGCGGGTCTAAGTGCTTTAACAGGAGCTGCCAT
TTCC

BO05326.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13475-PA 1542 HGTX-RA 1..886 17..902 4430 100 Plus
CG13475-PA 1542 HGTX-RA 887..931 902..946 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 3014 CG13475-RA 824..1763 13..951 4645 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14597786..14598717 943..13 4595 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 23:54:02 has no hits.

BO05326.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:35 Download gff for BO05326.5prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-PA 1..938 17..954 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:39 Download gff for BO05326.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13475-PA 1..938 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:24 Download gff for BO05326.5prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 824..1765 13..954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:24 Download gff for BO05326.5prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 824..1765 13..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:24 Download gff for BO05326.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14597783..14598717 13..946 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:24 Download gff for BO05326.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14590883..14591817 13..946 99   Minus

BO05326.complete Sequence

1573 bp (1573 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ630012

> BO05326.complete
GAAGTTATCAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATA
GTTTTGCGGCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCAT
CATTTGGCGGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGC
GATGGCGGCGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAG
CGGCGGCAGCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAAT
AGCAGTAACAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACA
TGGCGGAGGTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCG
CCTCTTCTAGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACAC
AATTCCAGTCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAG
GAGCAGCGGAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCAC
CGCCGCAGGGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGG
GCAAAGTTCCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGC
CAACCATGCCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACC
ACAAGCTCCCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCG
ATGACCACGGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGC
AAATGGCTTGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATC
GCGGATCCGGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACC
AACAGCCAGGGTGCACCCAATCCGCACGGCATCGATACCATCCTCTCCAA
ACCACCGCCGGTGACATCGGCGGGTCTAAGTGCTTTAACAGGAGCTGGCA
TTCCCCGCTTCTCGATCGCCGCCGCAGCAGCGGGAATGGCCCAGTATCTA
TCGCAGAGCCAAGGGGCGCCACTGAAGACCCACGCCGGACACATAGTGGA
CCGCACGCACCTGTACTGGCCAGGATTACAGGGACTGGTGGCCAATCCCA
TCGCGTGGCGCGAACGGCTCTCCAACACGATGTCCGCCAATCTGTCTCAA
TCGCATCAGCATCATCCATCGAACGACAAGGATGGCAAAAAGAAACACAC
CCGCCCAACATTCAGTGGTCAGCAGATCTTCGCCCTGGAGAAGACATTCG
AGCAAACCAAGTATCTGGCCGGACCAGAGCGTGCCAAGCTCGCTTACGCC
TTAGGAATGTCCGAGTCGCAGGTTAAGGTCTGGTTCCAGAATCGTCGCAC
CAAATGGCGCAAACGGCATGCGGCGGAAATGGCCACGGCCAAAAGGAAAC
AGGACGATATGGGCGGCGATAACGATGGCGATTGCAGCGAGACCATGGAT
AGCGATAACGAAAGTCTCGATATGGGCGAGTCCCCGGCTCAGAACAAGAG
ATGTCGCAGCAACAGTTCTGGGTCCTCGCAGCAGCAGCAGGATAATTATC
GTCATGCAAGCTTTCTAGACCAT

BO05326.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 1542 CG13475-PA 1..1539 17..1555 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 3014 CG13475-RA 824..2366 13..1555 7700 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14597786..14598717 944..13 4645 99.9 Minus
3L 28110227 3L 14583870..14584099 1555..1326 1150 100 Minus
3L 28110227 3L 14589999..14590197 1329..1131 995 100 Minus
3L 28110227 3L 14595890..14596077 1130..943 940 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:07:38 has no hits.

BO05326.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:22 Download gff for BO05326.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RB 273..1818 13..1559 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:04 Download gff for BO05326.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RB 273..1818 13..1559 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:56:53 Download gff for BO05326.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 828..2366 17..1557 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:22 Download gff for BO05326.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RB 273..1818 13..1559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:28 Download gff for BO05326.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 828..2366 17..1557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:28 Download gff for BO05326.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14583868..14584097 1328..1557 99 <- Minus
3L 14590001..14590197 1131..1327 100 <- Minus
3L 14595890..14596075 945..1130 100 <- Minus
3L 14597786..14598713 17..944 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:56:53 Download gff for BO05326.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14576968..14577197 1328..1557 99 <- Minus
arm_3L 14583101..14583297 1131..1327 100 <- Minus
arm_3L 14588990..14589175 945..1130 100 <- Minus
arm_3L 14590886..14591813 17..944 100   Minus

BO05326.pep Sequence

Translation from 16 to 1573

> BO05326.pep
MDLINPYMRHHSFAAAAQGSPPSAAQRHHLAAAMSNGFADVHAHAMAAAD
YQQQLADYHSAAAAAAVYANNNNNNNNNSSNNNNSSPLMLLKAAHGGGLK
DSDSPSTTPPPASSRLHSDSSPSPRYEHNSSPGVDSAKSYALSQRSSGAE
DPCQTSESASPPPQGQNDYSPENLSSQRAKFQHHHGVNPLALHNANHAGN
PGCHNNNNHMDHKLPLSFLGPPLAALHSMTTEMKGQGVGGSSASANGLSY
SHSPNSHLISDRGSGGSSSSSSTTTTNTNSQGAPNPHGIDTILSKPPPVT
SAGLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLY
WPGLQGLVANPIAWRERLSNTMSANLSQSHQHHPSNDKDGKKKHTRPTFS
GQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKR
HAAEMATAKRKQDDMGGDNDGDCSETMDSDNESLDMGESPAQNKRCRSNS
SGSSQQQQDNYRHASFLDH

BO05326.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-PA 513 CG13475-PA 1..513 1..513 2720 100 Plus
CG18599-PA 475 CG18599-PA 45..375 116..451 215 24.7 Plus
Vsx1-PB 837 CG4136-PB 221..464 235..456 208 28.3 Plus
Vsx1-PA 837 CG4136-PA 221..464 235..456 208 28.3 Plus
C15-PA 339 CG7937-PA 91..279 250..454 197 31.8 Plus