Clone Sequence Records
BO05326.3prime Sequence
907 bp (865 high quality bases) assembled on 2005-12-02
> BO05326.3prime
ATGGTCTAGAAAGCTTGCATGACGATAATTATCCTGCTGCTGCTGCGAGG
ACCCAGAACTGTTGCTGCGACATCTCTTGTTCTGAGCCGGGGACTCGCCC
ATATCGAGACTTTCGTTATCGCTATCCATGGTCTCGCTGCAATCGCCATC
GTTATCGCCGCCCATATCGTCCTGTTTCCTTTTGGCCGTGGCCATTTCCG
CCGCATGCCGTTTGCGCCATTTGGTGCGACGATTCTGGAACCAGACCTTA
ACCTGCGACTCGGACATTCCTAAGGCGTAAGCGAGCTTGGCACGCTCTGG
TCCGGCCAGATACTTGGTTTGCTCGAATGTCTTCTCCAGGGCGAAGATCT
GCTGACCACTGAATGTTGGGCGGGTGTGTTTCTTTTTGCCATCCTTGTCG
TTCGATGGATGATGCTGATGCGATTGAGACAGATTGGCGGACATCGTGTT
GGAGAGCCGTTCGCGCCACGCGATGGGATTGGCCACCAGTCCCTGTAATC
CTGGCCAGTACAGGTGCGTGCGGTCCACTATGTGTCCGGCGTGGGTCTTC
AGTGGCGCCCCTTGGCTCTGCGATAGATACTGGGCCATTCCCGCTGCTGC
GGCGGCGATCGAGAAGCGGGGAATGCCAGCTCCTGTTAAAGCACTTAGAC
CCGCCGATGTCACCGGCGGTGGTTTGGAGAGGATGGTATCGATGCCGTGC
GGATTGGGTGCACCCTGGCTGTTGGTGTTCGTAGTCGTGGTGGAGGACGA
CGATGAGCTGCCACCGGATCCGCGATCACTGATCAAATGCGAATTCGGGC
TGTGGCTATAGGACAAGCCATTTGCCGACGCCGACGATCCACCGACTCCT
TGACCCTTCATTTCCGTGGTCATCGAGTGAAGAGCGGCCAAGCGGGGACC
GAAAAAC
BO05326.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13475-PA | 1542 | HGTX-RA | 668..1539 | 890..19 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HGTX-RA | 3014 | CG13475-RA | 1479..2366 | 906..19 | 4380 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14597786..14598062 | 630..906 | 1325 | 98.6 | Plus |
3L | 28110227 | 3L | 14583870..14584099 | 19..248 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 14589999..14590197 | 245..443 | 995 | 100 | Plus |
3L | 28110227 | 3L | 14595890..14596077 | 444..631 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:48:14 has no hits.
BO05326.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:34 Download gff for
BO05326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-PA | 650..1542 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:38 Download gff for
BO05326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13475-PA | 650..1542 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:25 Download gff for
BO05326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 1477..2369 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:48 Download gff for
BO05326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 1477..2369 | 15..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:48 Download gff for
BO05326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14583866..14584097 | 15..246 | 99 | <- | Plus |
3L | 14590001..14590197 | 247..443 | 100 | <- | Plus |
3L | 14595890..14596075 | 444..629 | 100 | <- | Plus |
3L | 14597786..14598064 | 630..907 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:25 Download gff for
BO05326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14576966..14577197 | 15..246 | 99 | <- | Plus |
arm_3L | 14583101..14583297 | 247..443 | 100 | <- | Plus |
arm_3L | 14588990..14589175 | 444..629 | 100 | <- | Plus |
arm_3L | 14590886..14591164 | 630..907 | 98 | | Plus |
BO05326.5prime Sequence
954 bp (805 high quality bases) assembled on 2005-12-02
> BO05326.5prime
GAAGTTATCAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATA
GTTTTGCGGCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCAT
CATTTGGCGGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGC
GATGGCGGCGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAG
CGGCGGCAGCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAAT
AGCAGTAACAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACA
TGGCGGAGGTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCG
CCTCTTCTAGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACAC
AATTCCAGTCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAG
GAGCAGCGGAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCAC
CGCCGCAGGGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGG
GCAAAGTTCCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGC
CAACCATGCCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACC
ACAAGCTCCCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCG
ATGACCACGGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGC
AAATGGCTTGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATC
GCGGATCCGGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACC
AACAGCCAGGGTGCACCCAATCCGCACGGCATCGATACCATCCTCTCCAA
ACACCGCCGGTGACATCGGCGGGTCTAAGTGCTTTAACAGGAGCTGCCAT
TTCC
BO05326.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13475-PA | 1542 | HGTX-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
CG13475-PA | 1542 | HGTX-RA | 887..931 | 902..946 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HGTX-RA | 3014 | CG13475-RA | 824..1763 | 13..951 | 4645 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14597786..14598717 | 943..13 | 4595 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:54:02 has no hits.
BO05326.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:35 Download gff for
BO05326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:39 Download gff for
BO05326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13475-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:24 Download gff for
BO05326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 824..1765 | 13..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:24 Download gff for
BO05326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 824..1765 | 13..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:24 Download gff for
BO05326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14597783..14598717 | 13..946 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:24 Download gff for
BO05326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14590883..14591817 | 13..946 | 99 | | Minus |
BO05326.complete Sequence
1573 bp (1573 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ630012
> BO05326.complete
GAAGTTATCAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATA
GTTTTGCGGCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCAT
CATTTGGCGGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGC
GATGGCGGCGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAG
CGGCGGCAGCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAAT
AGCAGTAACAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACA
TGGCGGAGGTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCG
CCTCTTCTAGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACAC
AATTCCAGTCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAG
GAGCAGCGGAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCAC
CGCCGCAGGGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGG
GCAAAGTTCCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGC
CAACCATGCCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACC
ACAAGCTCCCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCG
ATGACCACGGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGC
AAATGGCTTGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATC
GCGGATCCGGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACC
AACAGCCAGGGTGCACCCAATCCGCACGGCATCGATACCATCCTCTCCAA
ACCACCGCCGGTGACATCGGCGGGTCTAAGTGCTTTAACAGGAGCTGGCA
TTCCCCGCTTCTCGATCGCCGCCGCAGCAGCGGGAATGGCCCAGTATCTA
TCGCAGAGCCAAGGGGCGCCACTGAAGACCCACGCCGGACACATAGTGGA
CCGCACGCACCTGTACTGGCCAGGATTACAGGGACTGGTGGCCAATCCCA
TCGCGTGGCGCGAACGGCTCTCCAACACGATGTCCGCCAATCTGTCTCAA
TCGCATCAGCATCATCCATCGAACGACAAGGATGGCAAAAAGAAACACAC
CCGCCCAACATTCAGTGGTCAGCAGATCTTCGCCCTGGAGAAGACATTCG
AGCAAACCAAGTATCTGGCCGGACCAGAGCGTGCCAAGCTCGCTTACGCC
TTAGGAATGTCCGAGTCGCAGGTTAAGGTCTGGTTCCAGAATCGTCGCAC
CAAATGGCGCAAACGGCATGCGGCGGAAATGGCCACGGCCAAAAGGAAAC
AGGACGATATGGGCGGCGATAACGATGGCGATTGCAGCGAGACCATGGAT
AGCGATAACGAAAGTCTCGATATGGGCGAGTCCCCGGCTCAGAACAAGAG
ATGTCGCAGCAACAGTTCTGGGTCCTCGCAGCAGCAGCAGGATAATTATC
GTCATGCAAGCTTTCTAGACCAT
BO05326.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HGTX-RA | 1542 | CG13475-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HGTX-RA | 3014 | CG13475-RA | 824..2366 | 13..1555 | 7700 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14597786..14598717 | 944..13 | 4645 | 99.9 | Minus |
3L | 28110227 | 3L | 14583870..14584099 | 1555..1326 | 1150 | 100 | Minus |
3L | 28110227 | 3L | 14589999..14590197 | 1329..1131 | 995 | 100 | Minus |
3L | 28110227 | 3L | 14595890..14596077 | 1130..943 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:07:38 has no hits.
BO05326.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:22 Download gff for
BO05326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RB | 273..1818 | 13..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:04 Download gff for
BO05326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RB | 273..1818 | 13..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:56:53 Download gff for
BO05326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 828..2366 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:22 Download gff for
BO05326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RB | 273..1818 | 13..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:28 Download gff for
BO05326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 828..2366 | 17..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:28 Download gff for
BO05326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14583868..14584097 | 1328..1557 | 99 | <- | Minus |
3L | 14590001..14590197 | 1131..1327 | 100 | <- | Minus |
3L | 14595890..14596075 | 945..1130 | 100 | <- | Minus |
3L | 14597786..14598713 | 17..944 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:56:53 Download gff for
BO05326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14576968..14577197 | 1328..1557 | 99 | <- | Minus |
arm_3L | 14583101..14583297 | 1131..1327 | 100 | <- | Minus |
arm_3L | 14588990..14589175 | 945..1130 | 100 | <- | Minus |
arm_3L | 14590886..14591813 | 17..944 | 100 | | Minus |
BO05326.pep Sequence
Translation from 16 to 1573
> BO05326.pep
MDLINPYMRHHSFAAAAQGSPPSAAQRHHLAAAMSNGFADVHAHAMAAAD
YQQQLADYHSAAAAAAVYANNNNNNNNNSSNNNNSSPLMLLKAAHGGGLK
DSDSPSTTPPPASSRLHSDSSPSPRYEHNSSPGVDSAKSYALSQRSSGAE
DPCQTSESASPPPQGQNDYSPENLSSQRAKFQHHHGVNPLALHNANHAGN
PGCHNNNNHMDHKLPLSFLGPPLAALHSMTTEMKGQGVGGSSASANGLSY
SHSPNSHLISDRGSGGSSSSSSTTTTNTNSQGAPNPHGIDTILSKPPPVT
SAGLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLY
WPGLQGLVANPIAWRERLSNTMSANLSQSHQHHPSNDKDGKKKHTRPTFS
GQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKR
HAAEMATAKRKQDDMGGDNDGDCSETMDSDNESLDMGESPAQNKRCRSNS
SGSSQQQQDNYRHASFLDH
BO05326.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HGTX-PA | 513 | CG13475-PA | 1..513 | 1..513 | 2720 | 100 | Plus |
CG18599-PA | 475 | CG18599-PA | 45..375 | 116..451 | 215 | 24.7 | Plus |
Vsx1-PB | 837 | CG4136-PB | 221..464 | 235..456 | 208 | 28.3 | Plus |
Vsx1-PA | 837 | CG4136-PA | 221..464 | 235..456 | 208 | 28.3 | Plus |
C15-PA | 339 | CG7937-PA | 91..279 | 250..454 | 197 | 31.8 | Plus |