Clone Sequence Records
BO05349.3prime Sequence
928 bp (884 high quality bases) assembled on 2005-12-02
> BO05349.3prime
ATGGTCTAGAAAGCTTGCCCGCAGATGACTAAAGTGAACCTCCAGCCAGC
AGGGGCAGCCCATGATATCCTGTCTTTTGTAGTCGCGTCCCCAGCCCTTG
CCAAAGCTGATCTTAATGCTGAAGTAGTCGACGGGTCCCATGGGATGATG
TCCGTGATCTCTCATGCTCAGAAGTTCAGCCCTATTGGTTTCAAAGGCCT
TCAGACAATAGCCCGGCATCACTTTGCACACTCGGTCCAGATTTTCGGAC
AGGGTGGGTGAATCGACAAAAATGGTTGTATTCCCACGATTGTAGATCCA
AACATCGCCGTTCTCCAGACTCAATGTGACCCCCAATCCGACCGTATGAC
GCGCTTTTGGCACCACCGAGTGGATCTGATTGCCTGCTGGTGTGAGGTCA
CGTAGGCACATGCTGTCCACCTCACTGGCCACAATCCCATCCGTGTAGAT
ATTGACTGCATTCGTTTTGGCGTGAAAGAACTCCCCGACGCGGTGGGCCA
TCTCCCAGTAGGCGATTTGGCACCACACCTGACTGTTGATGTTATGATCT
TTTCCATCAGTGGTAACCGACTCGTAGAGAGCCGGCTTGTAGATGTTCGA
AATGCTGGTGCTTTCGGCACTCCACGTGCTGAGCGCTGCCGACTTTGCAT
CGTTCTGCGAGTCTTCTTCGAAATCTGCATCTTTCAGTCTCAGCATTTTT
GAGCGTTGGTACGGCGGTGTTGGGGATTCTGTTTCGGGCTGGTGCAGGAT
GCGAAACCAATGCAGCGGATTGCAGCACATGTAGATGCAGTCGCGGGCGG
CGGGACAAGTGGGCAGTCGCTTCAGTTCCTTGGCGTTCCACAATTCCCGC
CAGAAAAACAGGCGACTGGCGGTCACGTGCGGCTCCCAAACCGTTTGCGT
TTTGCACGGTATCAGGATGCACTGCAGG
BO05349.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5201-PA | 1707 | Dad-RA | 795..1704 | 928..19 | 4550 | 100 | Minus |
| CG5201-PB | 1707 | Dad-RB | 795..1704 | 928..19 | 4550 | 100 | Minus |
| CG5201-PC | 1707 | Dad-RC | 795..1704 | 928..19 | 4550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dad-RC | 3751 | CG5201-RC | 1566..2475 | 928..19 | 4550 | 100 | Minus |
| Dad-RB | 3550 | CG5201-RB | 1365..2274 | 928..19 | 4550 | 100 | Minus |
| Dad-RA | 3767 | CG5201-RA | 1582..2491 | 928..19 | 4550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17068469..17068687 | 550..332 | 1095 | 100 | Minus |
| 3R | 32079331 | 3R | 17058505..17058704 | 928..729 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 17068968..17069132 | 183..19 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 17068749..17068901 | 333..181 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 17064831..17064961 | 679..549 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 17064714..17064769 | 730..675 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:49:09 has no hits.
BO05349.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:52 Download gff for
BO05349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5201-PB | 795..1707 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:04 Download gff for
BO05349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5201-PC | 795..1707 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:34 Download gff for
BO05349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RA | 1582..2491 | 19..928 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:38 Download gff for
BO05349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RA | 1582..2491 | 19..928 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:38 Download gff for
BO05349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17058505..17058704 | 729..928 | 100 | -> | Minus |
| 3R | 17064716..17064769 | 675..728 | 100 | -> | Minus |
| 3R | 17064836..17064961 | 549..674 | 100 | -> | Minus |
| 3R | 17068471..17068686 | 333..548 | 100 | -> | Minus |
| 3R | 17068750..17068900 | 182..332 | 100 | -> | Minus |
| 3R | 17068970..17069132 | 19..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:34 Download gff for
BO05349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12884227..12884426 | 729..928 | 100 | -> | Minus |
| arm_3R | 12890438..12890491 | 675..728 | 100 | -> | Minus |
| arm_3R | 12890558..12890683 | 549..674 | 100 | -> | Minus |
| arm_3R | 12894193..12894408 | 333..548 | 100 | -> | Minus |
| arm_3R | 12894472..12894622 | 182..332 | 100 | -> | Minus |
| arm_3R | 12894692..12894854 | 19..181 | 100 | | Minus |
BO05349.5prime Sequence
937 bp (778 high quality bases) assembled on 2005-12-02
> BO05349.5prime
GAAGTTATCAGTCGACATGATATTCCCAAGAGAAAAGAAGGTGTTATGGC
GTTATGCGTCCAGCAACAATCCGAGCAATGGGGTGTCAGCAGCACCGCCC
GCTCAGCCACCACGGCCGCCTCCCCCTCCACATCGACCCCGCCCTCATCA
GTGTACTCCAAGCTTTGGTTATTCCTGCAACGAAGAGGACTCCTTGGCAA
TGCGACAGACGCCGCTGCCGCCTTACAGTTCGATAGCCTGCGGGATGGAC
TGCTCCAGCTCAAACTCCAGCTCCTGTGGCCAGAGTTTGAGTCTGAGTCA
GGGGCAAGGCCACAACAACAACAACAGCCATCCGTACCGCCGTCTGCCAA
ATCACATGGATGTGTTGCCGCCGCCTCCGTCAGCGTGCGACCGCTGCTGT
ACCGCTCCTGGTTACAGCTGCGCAAGCTCCTGCGACGATATGTTGATCGA
CGGAAGCGATCTGGATCAGGATCGGAGTCCGGATCAGGGACAGGTTCAGC
CGGTGGACCGCCGGATGATAAGTGCCACCACCTTTACGACCATGTTTCGG
AAATGCTGCGGCGGCGCAACGGAGTCCACCAGCGGATCCACACTTACGAT
TCCAGTCAGCACGTCCAGAGCCACCGCTCATCCTCCCCAAACGCAAGCCC
AGAATGGCAAACGATTTCGCGAGGATTTCGAAGCGCTAATGAAGCAACTC
AAGCGCAAGCAGAGAAACGAACTTCTGCTTGCAGTCAAGAGTCGCCTAGA
TCCGCCGACCAAGACGCAGCGCGATGTCGTGAAACCCACCACCACCACCG
CACCCACCTACCTGCAGTGCATCCTGATACCGTGCAAAACGCAAACGGTT
TGGGAGCCGCACGTGACCGCCAGTCGCCTGTTTTTCTGGGCGGGAATTGT
GGAAACGCCAGGAACTGAAGCGACTGCCCACTTGTCC
BO05349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5201-PA | 1707 | Dad-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
| CG5201-PB | 1707 | Dad-RB | 1..873 | 17..889 | 4340 | 99.8 | Plus |
| CG5201-PC | 1707 | Dad-RC | 1..873 | 17..889 | 4340 | 99.8 | Plus |
| CG5201-PA | 1707 | Dad-RA | 893..920 | 910..937 | 140 | 100 | Plus |
| CG5201-PB | 1707 | Dad-RB | 893..920 | 910..937 | 140 | 100 | Plus |
| CG5201-PC | 1707 | Dad-RC | 893..920 | 910..937 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dad-RC | 3751 | CG5201-RC | 771..1691 | 16..937 | 4525 | 99.6 | Plus |
| Dad-RB | 3550 | CG5201-RB | 570..1490 | 16..937 | 4525 | 99.6 | Plus |
| Dad-RA | 3767 | CG5201-RA | 787..1707 | 16..937 | 4525 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17057710..17058630 | 16..937 | 4485 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:38:58 has no hits.
BO05349.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:53 Download gff for
BO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5201-PB | 1..920 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:05 Download gff for
BO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5201-PC | 1..920 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:41 Download gff for
BO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RA | 781..1707 | 8..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:43:44 Download gff for
BO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RA | 781..1707 | 8..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:43:44 Download gff for
BO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17057704..17058630 | 8..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:41 Download gff for
BO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12883426..12884352 | 8..937 | 99 | | Plus |
BO05349.complete Sequence
1738 bp assembled on 2008-08-14
GenBank Submission: FJ630013
> BO05349.complete
GAAGTTATCAGTCGACATGATATTCCCAAGAGAAAAGAAGGTGTTATGGC
GTTATGCGTCCAGCAACAATCCGAGCAATGGGGTGTCAGCAGCACCGCCC
GCTCAGCCACCACGGCCGCCTCCCCCTCCACATCGACCCCGCCCTCATCA
GTGTACTCCAAGCTTTGGTTATTCCTGCAACGAAGAGGACTCCTTGGCAA
TGCGACAGACGCCGCTGCCGCCTTACAGTTCGATAGCCTGCGGGATGGAC
TGCTCCAGCTCAAACTCCAGCTCCTGTGGCCAGAGTTTGAGTCTGAGTCA
GGGGCAAGGCCACAACAACAACAACAGCCATCCGTACCGCCGTCTGCCAA
ATCACATGGATGTGTTGCCGCCGCCTCCGTCAGCGTGCGACCGCTGCTGT
ACCGCTCCTGGTTACAGCTGCGCAAGCTCCTGCGACGATATGTTGATCGA
CGGAAGCGATCTGGATCAGGATCGGAGTCCGGATCAGGGACAGGTTCAGC
CGGTGGACCGCCGGATGATAAGTGCCACCACCTTTACGACCATGTTTCGG
AAATGCTGCGGCGGCGCAACGGAGTCCACCAGCGGATCCACACTTACGAT
TCCAGTCAGCACGTCCAGAGCCACCGCTCATCCTCCCCAAACGCAAGCCC
AGAATGGCAAACGATTTCGCGAGGATTTCGAAGCGCTAATGAAGCAACTC
AAGCGCAAGCAGAGAAACGAACTTCTGCTTGCAGTCAAGAGTCGCCTAGA
TCCGCCGACCAAGACGCAGCGCGATGTCGTGGAACCCACCACCACCACCG
CACCCACCTACCTGCAGTGCATCCTGATACCGTGCAAAACGCAAACGGTT
TGGGAGCCGCACGTGACCGCCAGTCGCCTGTTTTTCTGGCGGGAATTGTG
GAACGCCAAGGAACTGAAGCGACTGCCCACTTGTCCCGCCGCCCGCGACT
GCATCTACATGTGCTGCAATCCGCTGCATTGGTTTCGCATCCTGCACCAG
CCCGAAACAGAATCCCCAACACCGCCGTACCAACGCTCAAAAATGCTGAG
ACTGAAAGATGCAGATTTCGAAGAAGACTCGCAGAACGATGCAAAGTCGG
CAGCGCTCAGCACGTGGAGTGCCGAAAGCACCAGCATTTCGAACATCTAC
AAGCCGGCTCTCTACGAGTCGGTTACCACTGATGGAAAAGATCATAACAT
CAACAGTCAGGTGTGGTGCCAAATCGCCTACTGGGAGATGGCCCACCGCG
TCGGGGAGTTCTTTCACGCCAAAACGAATGCAGTCAATATCTACACGGAT
GGGATTGTGGCCAGTGAGGTGGACAGCATGTGCCTACGTGACCTCACACC
AGCAGGCAATCAGATCCACTCGGTGGTGCCAAAAGCGCGTCATACGGTCG
GATTGGGGGTCACATTGAGTCTGGAGAACGGCGATGTTTGGATCTACAAT
CGTGGGAATACAACCATTTTTGTCGATTCACCCACCCTGTCCGAAAATCT
GGACCGAGTGTGCAAAGTGATGCCGGGCTATTGTCTGAAGGCCTTTGAAA
CCAATAGGGCTGAACTTCTGAGCATGAGAGATCACGGACATCATCCCATG
GGACCCGTCGACTACTTCAGCATTAAGATCAGCTTTGGCAAGGGCTGGGG
ACGCGACTACAAAAGACAGGATATCATGGGCTGCCCCTGCTGGCTGGAGG
TTCACTTTAGTCATCTGCGGGCAAGCTTTCTAGACCAT
BO05349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dad-RC | 1707 | CG5201-PC | 1..1704 | 17..1720 | 8520 | 100 | Plus |
| Dad-RB | 1707 | CG5201-PB | 1..1704 | 17..1720 | 8520 | 100 | Plus |
| Dad-RA | 1707 | CG5201-PA | 1..1704 | 17..1720 | 8520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dad-RC | 3751 | CG5201-RC | 771..2475 | 16..1720 | 8525 | 100 | Plus |
| Dad-RB | 3550 | CG5201-RB | 570..2274 | 16..1720 | 8525 | 100 | Plus |
| Dad-RA | 3767 | CG5201-RA | 787..2491 | 16..1720 | 8525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17057710..17058704 | 16..1010 | 4975 | 100 | Plus |
| 3R | 32079331 | 3R | 17068469..17068687 | 1189..1407 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 17068968..17069132 | 1556..1720 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 17068749..17068901 | 1406..1558 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 17064831..17064961 | 1060..1190 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 17064714..17064769 | 1009..1064 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:59:25 has no hits.
BO05349.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:56 Download gff for
BO05349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RC | 765..2475 | 8..1720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:01 Download gff for
BO05349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RA | 788..2491 | 17..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:05 Download gff for
BO05349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RC | 772..2475 | 17..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:32 Download gff for
BO05349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dad-RA | 788..2491 | 17..1722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:32 Download gff for
BO05349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17057711..17058704 | 17..1010 | 100 | -> | Plus |
| 3R | 17064716..17064769 | 1011..1064 | 100 | -> | Plus |
| 3R | 17064836..17064961 | 1065..1190 | 100 | -> | Plus |
| 3R | 17068471..17068686 | 1191..1406 | 100 | -> | Plus |
| 3R | 17068750..17068900 | 1407..1557 | 100 | -> | Plus |
| 3R | 17068970..17069132 | 1558..1722 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:01 Download gff for
BO05349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12894472..12894622 | 1407..1557 | 100 | -> | Plus |
| arm_3R | 12883433..12884426 | 17..1010 | 100 | -> | Plus |
| arm_3R | 12890438..12890491 | 1011..1064 | 100 | -> | Plus |
| arm_3R | 12890558..12890683 | 1065..1190 | 100 | -> | Plus |
| arm_3R | 12894193..12894408 | 1191..1406 | 100 | -> | Plus |
| arm_3R | 12894692..12894854 | 1558..1722 | 98 | | Plus |
BO05349.pep Sequence
Translation from 16 to 1738
> BO05349.pep
MIFPREKKVLWRYASSNNPSNGVSAAPPAQPPRPPPPPHRPRPHQCTPSF
GYSCNEEDSLAMRQTPLPPYSSIACGMDCSSSNSSSCGQSLSLSQGQGHN
NNNSHPYRRLPNHMDVLPPPPSACDRCCTAPGYSCASSCDDMLIDGSDLD
QDRSPDQGQVQPVDRRMISATTFTTMFRKCCGGATESTSGSTLTIPVSTS
RATAHPPQTQAQNGKRFREDFEALMKQLKRKQRNELLLAVKSRLDPPTKT
QRDVVEPTTTTAPTYLQCILIPCKTQTVWEPHVTASRLFFWRELWNAKEL
KRLPTCPAARDCIYMCCNPLHWFRILHQPETESPTPPYQRSKMLRLKDAD
FEEDSQNDAKSAALSTWSAESTSISNIYKPALYESVTTDGKDHNINSQVW
CQIAYWEMAHRVGEFFHAKTNAVNIYTDGIVASEVDSMCLRDLTPAGNQI
HSVVPKARHTVGLGVTLSLENGDVWIYNRGNTTIFVDSPTLSENLDRVCK
VMPGYCLKAFETNRAELLSMRDHGHHPMGPVDYFSIKISFGKGWGRDYKR
QDIMGCPCWLEVHFSHLRASFLDH
BO05349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dad-PC | 568 | CG5201-PC | 1..568 | 1..568 | 3116 | 100 | Plus |
| Dad-PB | 568 | CG5201-PB | 1..568 | 1..568 | 3116 | 100 | Plus |
| Dad-PA | 568 | CG5201-PA | 1..568 | 1..568 | 3116 | 100 | Plus |
| Mad-PA | 455 | CG12399-PA | 98..429 | 281..563 | 258 | 28 | Plus |
| Mad-PB | 525 | CG12399-PB | 168..499 | 281..563 | 258 | 28 | Plus |
