Clone BO05401 Report

Search the DGRC for BO05401

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:1
Vector:pDNR-Dual
Associated Gene/Transcriptpont-RA
Protein status:BO05401.pep: validated full length
Sequenced Size:1402

Clone Sequence Records

BO05401.3prime Sequence

888 bp (885 high quality bases) assembled on 2005-12-02

> BO05401.3prime
ATGGTCTAGAAAGCTTGCCAACATAAACTTATTGTTCTTTTCGGACAAAT
GCTTCGAGGAGCGCTTGGCGTCAAGGAAGAGCGAGTGCACATCCTCGATA
TCATCCTTGCTGATCTGGTTGCGTCCGTTCACCTTGCACATCTGATGAGC
CGGGGTCAGCAGCTGGACGGCGTAGCGCAGCGTGGAGCTGGTTCCAATCT
CGCTGAGACGTGTAAATGCGTTCTCCTCCAGCTGCAGTCCCTCGGTCTGG
GCGCGCAACTTGATTATCTGCTCCATGTCGGCAGTGGAGTAGAGTAGTGT
GCGGATGATCAGCAAACGATCGAGCAGATCTAGCGGAATTCCGTGCGGCG
AAACTATGTCGGTGGTGCCACGAATAACACAGCGTCCACGATTGGTGGCA
AAAATCACAATTGGTGCAATGGGAGATTCCAGGGACTTGTGTAGGTAGGT
GAAGGTCTCCAAATCAAGCATGTGAATTTCATCGATGAAGAGAACTCCGG
GAACCAGCTCGGCTATGCCCTGGTCAATGTACTTGTTTACCACCTTGTTG
ATCTCCATGCGTAGTTTGTCAGTGATTTCAGTTTTCTTCGGCTTCATAAG
CTGGCCCATCATGGAGAGCACATCCTGGCCGCCCTGTGGACGAGCATTGG
CCACATCCAGATCGTGCAGAGTAACATCCTGGATAACCTCCTTCTTCTTG
TGGACATCGCCCTTGGGCAGCGGCACATACTCCTCGGTTTCGAGATCAAA
CTCAGTGGCAAAGGTGTCACTGCGACCCTGACGCTTTACGGCACCACTGT
TGGCCTCTATGTAGATGACATCGCCCACCTCCACCTTTTCCTTTTGCAAG
GCATCAAAGATGCTGGGATCCAGCTTGAGCTGCTTGGT

BO05401.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4003-PA 1371 pont-RA 499..1368 888..19 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
pont-RA 1659 CG4003-RA 719..1588 888..19 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10263476..10263828 371..19 1765 100 Minus
3R 32079331 3R 10262841..10263159 888..570 1595 100 Minus
3R 32079331 3R 10263216..10263415 570..371 1000 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:40:50 has no hits.

BO05401.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:00 Download gff for BO05401.3prime
Subject Subject Range Query Range Percent Splice Strand
pont-PA 499..1371 15..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:12 Download gff for BO05401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4003-PA 499..1371 15..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:28 Download gff for BO05401.3prime
Subject Subject Range Query Range Percent Splice Strand
pont-RA 719..1595 10..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:33 Download gff for BO05401.3prime
Subject Subject Range Query Range Percent Splice Strand
pont-RA 719..1595 10..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:33 Download gff for BO05401.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10262841..10263159 570..888 100 -> Minus
3R 10263217..10263415 371..569 100 -> Minus
3R 10263477..10263835 10..370 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:28 Download gff for BO05401.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6088563..6088881 570..888 100 -> Minus
arm_3R 6088939..6089137 371..569 100 -> Minus
arm_3R 6089199..6089557 10..370 99   Minus

BO05401.5prime Sequence

944 bp (796 high quality bases) assembled on 2005-11-29

> BO05401.5prime
GAAGTTATCAGTCGACATGAAGATCGAGGAAGTCAAGAGCACCGTGCGCA
CCCAACGCATCGCAGCCCACAGCCATGTGAAGGGATTGGGCCTGGACGAG
GTTGGAGCTGCCGTGCACAGTGCAGCCGGACTGGTGGGTCAGAAGGCGGC
ACGCGAGGCAGCCGGCATTGTGGTGGACCTCATCAAATCGAAAAAGATGG
CCGGACGAGCGCTTCTGCTGGCTGGGCCACCAGGCACGGGCAAAACCGCC
ATTGCTCTGGCCATTGCCCAGGAGCTGGGTAACAAAGTGCCCTTCTGTCC
CATGGTCGGATCGGAGGTATTCAGCAATGAGATCAAGAAGACCGAGGTGC
TAATGGAGAATTTCCGGCGCTCCATTGGTCTGCGCATTCGTGAGACCAAA
GAGGTGTACGAGGGCGAGGTTACGGAACTCACGCCCGTGGAAACCGAGAA
TCCTATGGGTGGCTATGGCAAGACTATCAGCAATGTCGTCATCGGCTTGA
AAACAGCCAAGGGAACCAAGCAGCTCAAGCTGGATCCCAGCATCTTTGAT
GCCTTGCAAAAGGAAAAGGTGGAGGTGGGCGATGTCATCTACATAGAGGC
CAACAGTGGTGCCGTAAAGCGTCAGGGTCGCAGTGACACCTTTGCCACTG
AGTTTGATCTCGAAACCGAGGAGTATGTGCCGCTGCCCAAGGGCGATGTC
CACAAGAAGAAGGAGGTTATCCAGGATGTTACTCTGCACGATCTGGATGT
GGCCAATGCTCGTCCACAGGGCGGCCAGGATGTGCTCTCCATGATGGGCC
AGCTTATGAAGCCGAAGAAAACTGAAATCACTGACAAACTACGCATGGAG
AATCAACAGGTGGTAAACAAGTACATTGACCCAGGCATAGCCGAGCTGGT
TCCCGGAGTTCTCTTCATCGATGAAATTCACATGCTTGATTTGG

BO05401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4003-PA 1371 pont-RA 1..835 17..851 4175 100 Plus
CG4003-PA 1371 pont-RA 842..928 858..944 385 97.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
pont-RA 1659 CG4003-RA 220..1148 16..944 4570 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10262342..10263159 16..833 4090 100 Plus
3R 32079331 3R 10263216..10263327 833..944 455 93.8 Plus
Blast to na_te.dros performed on 2015-02-13 12:41:01 has no hits.

BO05401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:02 Download gff for BO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
pont-PA 1..928 17..944 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:14 Download gff for BO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4003-PA 1..928 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:47 Download gff for BO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
pont-RA 210..1148 5..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:36 Download gff for BO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
pont-RA 210..1148 5..944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:36 Download gff for BO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10262332..10263159 5..833 99 -> Plus
3R 10263217..10263327 834..944 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:47 Download gff for BO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6088054..6088881 5..833 99 -> Plus
arm_3R 6088939..6089049 834..944 96   Plus

BO05401.complete Sequence

1402 bp (1402 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630014

> BO05401.complete
GAAGTTATCAGTCGACATGAAGATCGAGGAAGTCAAGAGCACCGTGCGCA
CCCAACGCATCGCAGCCCACAGCCATGTGAAGGGATTGGGCCTGGACGAG
GTTGGAGCTGCCGTGCACAGTGCAGCCGGACTGGTGGGTCAGAAGGCGGC
ACGCGAGGCAGCCGGCATTGTGGTGGACCTCATCAAATCGAAAAAGATGG
CCGGACGAGCGCTTCTGCTGGCTGGGCCACCAGGCACGGGCAAAACCGCC
ATTGCTCTGGCCATTGCCCAGGAGCTGGGTAACAAAGTGCCCTTCTGTCC
CATGGTCGGATCGGAGGTATTCAGCAATGAGATCAAGAAGACCGAGGTGC
TAATGGAGAATTTCCGGCGCTCCATTGGTCTGCGCATTCGTGAGACCAAA
GAGGTGTACGAGGGCGAGGTTACGGAACTCACGCCCGTGGAAACCGAGAA
TCCTATGGGTGGCTATGGCAAGACTATCAGCAATGTCGTCATCGGCTTGA
AAACAGCCAAGGGAACCAAGCAGCTCAAGCTGGATCCCAGCATCTTTGAT
GCCTTGCAAAAGGAAAAGGTGGAGGTGGGCGATGTCATCTACATAGAGGC
CAACAGTGGTGCCGTAAAGCGTCAGGGTCGCAGTGACACCTTTGCCACTG
AGTTTGATCTCGAAACCGAGGAGTATGTGCCGCTGCCCAAGGGCGATGTC
CACAAGAAGAAGGAGGTTATCCAGGATGTTACTCTGCACGATCTGGATGT
GGCCAATGCTCGTCCACAGGGCGGCCAGGATGTGCTCTCCATGATGGGCC
AGCTTATGAAGCCGAAGAAAACTGAAATCACTGACAAACTACGCATGGAG
ATCAACAAGGTGGTAAACAAGTACATTGACCAGGGCATAGCCGAGCTGGT
TCCCGGAGTTCTCTTCATCGATGAAATTCACATGCTTGATTTGGAGACCT
TCACCTACCTACACAAGTCCCTGGAATCTCCCATTGCACCAATTGTGATT
TTTGCCACCAATCGTGGACGCTGTGTTATTCGTGGCACCACCGACATAGT
TTCGCCGCACGGAATTCCGCTAGATCTGCTCGATCGTTTGCTGATCATCC
GCACACTACTCTACTCCACTGCCGACATGGAGCAGATAATCAAGTTGCGC
GCCCAGACCGAGGGACTGCAGCTGGAGGAGAACGCATTTACACGTCTCAG
CGAGATTGGAACCAGCTCCACGCTGCGCTACGCCGTCCAGCTGCTGACCC
CGGCTCATCAGATGTGCAAGGTGAACGGACGCAACCAGATCAGCAAGGAT
GATATCGAGGATGTGCACTCGCTCTTCCTTGACGCCAAGCGCTCCTCGAA
GCATTTGTCCGAAAAGAACAATAAGTTTATGTTGGCAAGCTTTCTAGACC
AT

BO05401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
pont-RA 1371 CG4003-PA 1..1368 17..1384 6840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
pont-RA 1659 CG4003-RA 220..1588 16..1384 6845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10262342..10263159 16..833 4090 100 Plus
3R 32079331 3R 10263476..10263828 1032..1384 1765 100 Plus
3R 32079331 3R 10263216..10263415 833..1032 1000 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:48:13 has no hits.

BO05401.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:55 Download gff for BO05401.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1371 17..1388 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:18 Download gff for BO05401.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 221..1606 5..1393 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:42 Download gff for BO05401.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 221..1588 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:56 Download gff for BO05401.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 221..1606 5..1393 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:00 Download gff for BO05401.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 221..1588 17..1386 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:00 Download gff for BO05401.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10262343..10263159 17..833 100 -> Plus
3R 10263217..10263415 834..1032 100 -> Plus
3R 10263477..10263828 1033..1386 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:42 Download gff for BO05401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6088065..6088881 17..833 100 -> Plus
arm_3R 6088939..6089137 834..1032 100 -> Plus
arm_3R 6089199..6089550 1033..1386 99   Plus

BO05401.pep Sequence

Translation from 16 to 1402

> BO05401.pep
MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAG
IVVDLIKSKKMAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSE
VFSNEIKKTEVLMENFRRSIGLRIRETKEVYEGEVTELTPVETENPMGGY
GKTISNVVIGLKTAKGTKQLKLDPSIFDALQKEKVEVGDVIYIEANSGAV
KRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTLHDLDVANARP
QGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF
IDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGI
PLDLLDRLLIIRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTS
STLRYAVQLLTPAHQMCKVNGRNQISKDDIEDVHSLFLDAKRSSKHLSEK
NNKFMLASFLDH

BO05401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
pont-PA 456 CG4003-PA 1..456 1..456 2285 100 Plus
rept-PB 481 CG9750-PB 8..453 5..461 982 44.7 Plus
rept-PC 481 CG9750-PC 8..453 5..461 982 44.7 Plus
rept-PA 481 CG9750-PA 8..453 5..461 982 44.7 Plus