Clone Sequence Records
BO05401.3prime Sequence
888 bp (885 high quality bases) assembled on 2005-12-02
> BO05401.3prime
ATGGTCTAGAAAGCTTGCCAACATAAACTTATTGTTCTTTTCGGACAAAT
GCTTCGAGGAGCGCTTGGCGTCAAGGAAGAGCGAGTGCACATCCTCGATA
TCATCCTTGCTGATCTGGTTGCGTCCGTTCACCTTGCACATCTGATGAGC
CGGGGTCAGCAGCTGGACGGCGTAGCGCAGCGTGGAGCTGGTTCCAATCT
CGCTGAGACGTGTAAATGCGTTCTCCTCCAGCTGCAGTCCCTCGGTCTGG
GCGCGCAACTTGATTATCTGCTCCATGTCGGCAGTGGAGTAGAGTAGTGT
GCGGATGATCAGCAAACGATCGAGCAGATCTAGCGGAATTCCGTGCGGCG
AAACTATGTCGGTGGTGCCACGAATAACACAGCGTCCACGATTGGTGGCA
AAAATCACAATTGGTGCAATGGGAGATTCCAGGGACTTGTGTAGGTAGGT
GAAGGTCTCCAAATCAAGCATGTGAATTTCATCGATGAAGAGAACTCCGG
GAACCAGCTCGGCTATGCCCTGGTCAATGTACTTGTTTACCACCTTGTTG
ATCTCCATGCGTAGTTTGTCAGTGATTTCAGTTTTCTTCGGCTTCATAAG
CTGGCCCATCATGGAGAGCACATCCTGGCCGCCCTGTGGACGAGCATTGG
CCACATCCAGATCGTGCAGAGTAACATCCTGGATAACCTCCTTCTTCTTG
TGGACATCGCCCTTGGGCAGCGGCACATACTCCTCGGTTTCGAGATCAAA
CTCAGTGGCAAAGGTGTCACTGCGACCCTGACGCTTTACGGCACCACTGT
TGGCCTCTATGTAGATGACATCGCCCACCTCCACCTTTTCCTTTTGCAAG
GCATCAAAGATGCTGGGATCCAGCTTGAGCTGCTTGGT
BO05401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4003-PA | 1371 | pont-RA | 499..1368 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-RA | 1659 | CG4003-RA | 719..1588 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10263476..10263828 | 371..19 | 1765 | 100 | Minus |
3R | 32079331 | 3R | 10262841..10263159 | 888..570 | 1595 | 100 | Minus |
3R | 32079331 | 3R | 10263216..10263415 | 570..371 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:40:50 has no hits.
BO05401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:00 Download gff for
BO05401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-PA | 499..1371 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:12 Download gff for
BO05401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4003-PA | 499..1371 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:28 Download gff for
BO05401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 719..1595 | 10..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:33 Download gff for
BO05401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 719..1595 | 10..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:33 Download gff for
BO05401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10262841..10263159 | 570..888 | 100 | -> | Minus |
3R | 10263217..10263415 | 371..569 | 100 | -> | Minus |
3R | 10263477..10263835 | 10..370 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:28 Download gff for
BO05401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6088563..6088881 | 570..888 | 100 | -> | Minus |
arm_3R | 6088939..6089137 | 371..569 | 100 | -> | Minus |
arm_3R | 6089199..6089557 | 10..370 | 99 | | Minus |
BO05401.5prime Sequence
944 bp (796 high quality bases) assembled on 2005-11-29
> BO05401.5prime
GAAGTTATCAGTCGACATGAAGATCGAGGAAGTCAAGAGCACCGTGCGCA
CCCAACGCATCGCAGCCCACAGCCATGTGAAGGGATTGGGCCTGGACGAG
GTTGGAGCTGCCGTGCACAGTGCAGCCGGACTGGTGGGTCAGAAGGCGGC
ACGCGAGGCAGCCGGCATTGTGGTGGACCTCATCAAATCGAAAAAGATGG
CCGGACGAGCGCTTCTGCTGGCTGGGCCACCAGGCACGGGCAAAACCGCC
ATTGCTCTGGCCATTGCCCAGGAGCTGGGTAACAAAGTGCCCTTCTGTCC
CATGGTCGGATCGGAGGTATTCAGCAATGAGATCAAGAAGACCGAGGTGC
TAATGGAGAATTTCCGGCGCTCCATTGGTCTGCGCATTCGTGAGACCAAA
GAGGTGTACGAGGGCGAGGTTACGGAACTCACGCCCGTGGAAACCGAGAA
TCCTATGGGTGGCTATGGCAAGACTATCAGCAATGTCGTCATCGGCTTGA
AAACAGCCAAGGGAACCAAGCAGCTCAAGCTGGATCCCAGCATCTTTGAT
GCCTTGCAAAAGGAAAAGGTGGAGGTGGGCGATGTCATCTACATAGAGGC
CAACAGTGGTGCCGTAAAGCGTCAGGGTCGCAGTGACACCTTTGCCACTG
AGTTTGATCTCGAAACCGAGGAGTATGTGCCGCTGCCCAAGGGCGATGTC
CACAAGAAGAAGGAGGTTATCCAGGATGTTACTCTGCACGATCTGGATGT
GGCCAATGCTCGTCCACAGGGCGGCCAGGATGTGCTCTCCATGATGGGCC
AGCTTATGAAGCCGAAGAAAACTGAAATCACTGACAAACTACGCATGGAG
AATCAACAGGTGGTAAACAAGTACATTGACCCAGGCATAGCCGAGCTGGT
TCCCGGAGTTCTCTTCATCGATGAAATTCACATGCTTGATTTGG
BO05401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4003-PA | 1371 | pont-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
CG4003-PA | 1371 | pont-RA | 842..928 | 858..944 | 385 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-RA | 1659 | CG4003-RA | 220..1148 | 16..944 | 4570 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10262342..10263159 | 16..833 | 4090 | 100 | Plus |
3R | 32079331 | 3R | 10263216..10263327 | 833..944 | 455 | 93.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:41:01 has no hits.
BO05401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:02 Download gff for
BO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-PA | 1..928 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:14 Download gff for
BO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4003-PA | 1..928 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:47 Download gff for
BO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 210..1148 | 5..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:36 Download gff for
BO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 210..1148 | 5..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:36 Download gff for
BO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10262332..10263159 | 5..833 | 99 | -> | Plus |
3R | 10263217..10263327 | 834..944 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:47 Download gff for
BO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6088054..6088881 | 5..833 | 99 | -> | Plus |
arm_3R | 6088939..6089049 | 834..944 | 96 | | Plus |
BO05401.complete Sequence
1402 bp (1402 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630014
> BO05401.complete
GAAGTTATCAGTCGACATGAAGATCGAGGAAGTCAAGAGCACCGTGCGCA
CCCAACGCATCGCAGCCCACAGCCATGTGAAGGGATTGGGCCTGGACGAG
GTTGGAGCTGCCGTGCACAGTGCAGCCGGACTGGTGGGTCAGAAGGCGGC
ACGCGAGGCAGCCGGCATTGTGGTGGACCTCATCAAATCGAAAAAGATGG
CCGGACGAGCGCTTCTGCTGGCTGGGCCACCAGGCACGGGCAAAACCGCC
ATTGCTCTGGCCATTGCCCAGGAGCTGGGTAACAAAGTGCCCTTCTGTCC
CATGGTCGGATCGGAGGTATTCAGCAATGAGATCAAGAAGACCGAGGTGC
TAATGGAGAATTTCCGGCGCTCCATTGGTCTGCGCATTCGTGAGACCAAA
GAGGTGTACGAGGGCGAGGTTACGGAACTCACGCCCGTGGAAACCGAGAA
TCCTATGGGTGGCTATGGCAAGACTATCAGCAATGTCGTCATCGGCTTGA
AAACAGCCAAGGGAACCAAGCAGCTCAAGCTGGATCCCAGCATCTTTGAT
GCCTTGCAAAAGGAAAAGGTGGAGGTGGGCGATGTCATCTACATAGAGGC
CAACAGTGGTGCCGTAAAGCGTCAGGGTCGCAGTGACACCTTTGCCACTG
AGTTTGATCTCGAAACCGAGGAGTATGTGCCGCTGCCCAAGGGCGATGTC
CACAAGAAGAAGGAGGTTATCCAGGATGTTACTCTGCACGATCTGGATGT
GGCCAATGCTCGTCCACAGGGCGGCCAGGATGTGCTCTCCATGATGGGCC
AGCTTATGAAGCCGAAGAAAACTGAAATCACTGACAAACTACGCATGGAG
ATCAACAAGGTGGTAAACAAGTACATTGACCAGGGCATAGCCGAGCTGGT
TCCCGGAGTTCTCTTCATCGATGAAATTCACATGCTTGATTTGGAGACCT
TCACCTACCTACACAAGTCCCTGGAATCTCCCATTGCACCAATTGTGATT
TTTGCCACCAATCGTGGACGCTGTGTTATTCGTGGCACCACCGACATAGT
TTCGCCGCACGGAATTCCGCTAGATCTGCTCGATCGTTTGCTGATCATCC
GCACACTACTCTACTCCACTGCCGACATGGAGCAGATAATCAAGTTGCGC
GCCCAGACCGAGGGACTGCAGCTGGAGGAGAACGCATTTACACGTCTCAG
CGAGATTGGAACCAGCTCCACGCTGCGCTACGCCGTCCAGCTGCTGACCC
CGGCTCATCAGATGTGCAAGGTGAACGGACGCAACCAGATCAGCAAGGAT
GATATCGAGGATGTGCACTCGCTCTTCCTTGACGCCAAGCGCTCCTCGAA
GCATTTGTCCGAAAAGAACAATAAGTTTATGTTGGCAAGCTTTCTAGACC
AT
BO05401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-RA | 1371 | CG4003-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-RA | 1659 | CG4003-RA | 220..1588 | 16..1384 | 6845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10262342..10263159 | 16..833 | 4090 | 100 | Plus |
3R | 32079331 | 3R | 10263476..10263828 | 1032..1384 | 1765 | 100 | Plus |
3R | 32079331 | 3R | 10263216..10263415 | 833..1032 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:48:13 has no hits.
BO05401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:55 Download gff for
BO05401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 1..1371 | 17..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:18 Download gff for
BO05401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 221..1606 | 5..1393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:42 Download gff for
BO05401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 221..1588 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:56 Download gff for
BO05401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 221..1606 | 5..1393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:00 Download gff for
BO05401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 221..1588 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:00 Download gff for
BO05401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10262343..10263159 | 17..833 | 100 | -> | Plus |
3R | 10263217..10263415 | 834..1032 | 100 | -> | Plus |
3R | 10263477..10263828 | 1033..1386 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:42 Download gff for
BO05401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6088065..6088881 | 17..833 | 100 | -> | Plus |
arm_3R | 6088939..6089137 | 834..1032 | 100 | -> | Plus |
arm_3R | 6089199..6089550 | 1033..1386 | 99 | | Plus |
BO05401.pep Sequence
Translation from 16 to 1402
> BO05401.pep
MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAG
IVVDLIKSKKMAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSE
VFSNEIKKTEVLMENFRRSIGLRIRETKEVYEGEVTELTPVETENPMGGY
GKTISNVVIGLKTAKGTKQLKLDPSIFDALQKEKVEVGDVIYIEANSGAV
KRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTLHDLDVANARP
QGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF
IDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGI
PLDLLDRLLIIRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTS
STLRYAVQLLTPAHQMCKVNGRNQISKDDIEDVHSLFLDAKRSSKHLSEK
NNKFMLASFLDH
BO05401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-PA | 456 | CG4003-PA | 1..456 | 1..456 | 2285 | 100 | Plus |
rept-PB | 481 | CG9750-PB | 8..453 | 5..461 | 982 | 44.7 | Plus |
rept-PC | 481 | CG9750-PC | 8..453 | 5..461 | 982 | 44.7 | Plus |
rept-PA | 481 | CG9750-PA | 8..453 | 5..461 | 982 | 44.7 | Plus |