Clone Sequence Records
BO05402.3prime Sequence
869 bp (802 high quality bases) assembled on 2005-12-02
> BO05402.3prime
ATGGTCTAGAAAGCTTGCATGTTCCATCAAGGCCGGTGACGGTGTGCGTC
CGGTCTTGTTCTCATTGGGTGTGAAATTTAGAAAGTCCCAAATCAAAATT
GTATCATCATGCGAGCTGCTAACAATCTGGAACTCATCGAATTGCAAACG
AAATACGCGACCAGTATGTTCCACAAGGGTATTCAGACAGAGAGTATTGG
AGGCTGCTCTTGGATCCAGGGCGGCGACCAAATCCCAAACCTTGATCTTG
CCATCGTAGGCACCGCTAACGATTCGTTTCGTATCGAAACGAATGCAGCG
AACCAATTCCTCATGGCCCTCCAGGACACGTAAACAGGCACCGCACTCAA
TGTCCCACAGTCTTATGGAATTGTCTGAGCTGCCGCTGACCACCAGGCGA
TCTCTGTACTGTAGGCAGGCGATGCCACGCTTGTGGCCATTCAAGGTGCG
CACGAATTCACAGCTAGATGTGGACCAGACCTTGATGGTGCGATCCCCGC
TGGCGGACACGATGTACTTCTCATCAAAGTCCACCACATTGACGGCGGCA
CGGTGACCGACAAGGACGCGCCGCAGCGTAATCTCGCTGGGTGAGGTCAT
GTCCCAGACGGCGATGGAGCGATCCTTGGAGCAGGTAACCATCATGCCAT
TGTTAAAGCGCAAGTGCAGCACCGCCTCGCAGTGGTGGATAAGGGTGTTG
ACCATCTCGCCGGTATTGACGTCCCACACGCGGACGGTGGAGTCGCTGGA
GCCACTGATGATCACCTTGTCGTCATACTGCAGGCACAGCACCGATCCAG
TGTGGCCCATTANGGTCTTAACGCACTGCAAATCCGTGCGATCCCAGATC
TTGATGGTGTTGTCCCTCA
BO05402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3412-PA | 1533 | slmb-RA | 680..1530 | 869..19 | 4236 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-RB | 3492 | CG3412-RB | 1171..2021 | 869..19 | 4244 | 99.9 | Minus |
| slmb-RC | 2549 | CG3412-RC | 1171..2021 | 869..19 | 4244 | 99.9 | Minus |
| slmb-RA | 3492 | CG3412-RA | 1171..2021 | 869..19 | 4244 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21121553..21122009 | 362..818 | 2274 | 99.8 | Plus |
| 3R | 32079331 | 3R | 21121029..21121221 | 171..363 | 965 | 100 | Plus |
| 3R | 32079331 | 3R | 21120834..21120970 | 36..172 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 21122072..21122124 | 817..869 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:38:04 has no hits.
BO05402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:03 Download gff for
BO05402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-PA | 681..1533 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:15 Download gff for
BO05402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3412-PA | 681..1533 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:52 Download gff for
BO05402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 1172..2028 | 10..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:55 Download gff for
BO05402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 1172..2028 | 10..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:55 Download gff for
BO05402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21120834..21120969 | 36..171 | 100 | <- | Plus |
| 3R | 21121030..21121219 | 172..361 | 100 | <- | Plus |
| 3R | 21121553..21122007 | 362..816 | 99 | <- | Plus |
| 3R | 21122072..21122123 | 817..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:52 Download gff for
BO05402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16946556..16946691 | 36..171 | 100 | <- | Plus |
| arm_3R | 16947275..16947729 | 362..816 | 99 | <- | Plus |
| arm_3R | 16946752..16946941 | 172..361 | 100 | <- | Plus |
| arm_3R | 16947794..16947845 | 817..868 | 100 | | Plus |
BO05402.5prime Sequence
933 bp (792 high quality bases) assembled on 2005-12-02
> BO05402.5prime
GAAGTTATCAGTCGACATGATGAAAATGGAGACTGACAAAATAATGGACG
AAACCAACTCCAATGCACAGGCCTTCACAACCACTATGCTGTACGACCCG
GTGCGCAAGAAAGACTCATCGCCCACCTACCAAACGGAGCGGGAACTCTG
CTTTCAGTACTTCACCCAGTGGAGCGAGTCGGGCCAGGTGGACTTTGTGG
AGCACCTGCTGTCGCGCATGTGCCACTATCAACACGGACAGATCAATGCC
TATCTCAAGCCGATGCTCCAGCGGGACTTTATCACATTGCTGCCAATCAA
GGGTCTGGATCACATCGCAGAAAACATTTTGTCGTACTTGGATGCCGAAT
CGCTCAAATCATCCGAGCTGGTCTGCAAGGAATGGCTGCGCGTCATTTCC
GAGGGCATGCTCTGGAAGAAGCTCATCGAACGCAAGGTGCGCACAGATTC
CTTGTGGCGCGGACTGGCCGAGCGGCGTAATTGGATGCAGTACCTCTTCA
AGCCAAGACCGGGCCAGACTCAACGGCCACACTCATTCCATCGCGAGTTG
TTCCCCAAGATAATGAATGACATTGACAGCATAGAGAACAACTGGCGGAC
TGGCCGCCACATGCTGCGCCGCATCAACTGCCGGTCCGAGAACTCGAAGG
GTGTCTATTGTCTGCAGTACGATGACGGCAAGATTGTCTCCGGACTGAGG
GACAACACCATCAAGATCTGGGATCGCACGGATTTGCAGTGCGTTAAGAC
CCTAATGGGCCACACTGGATCGGTGCTGTGCCTGCAGTATGACGACNAGG
TGATCATCAGTGGCTCCAGCGACTCCACCGTCCGCGTGTGGGACGTCAAT
ACCGGCGAGATGGTCAACACCCTTATCCACCACTGCGAGGGCGTGCTGCA
CTTGCGCTTTACAATGGCATGATGGGTACCTGC
BO05402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3412-PA | 1533 | slmb-RA | 1..895 | 17..911 | 4406 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-RB | 3492 | CG3412-RB | 492..1409 | 17..933 | 4509 | 99.5 | Plus |
| slmb-RC | 2549 | CG3412-RC | 492..1409 | 17..933 | 4509 | 99.5 | Plus |
| slmb-RA | 3492 | CG3412-RA | 492..1409 | 17..933 | 4509 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21122321..21122593 | 569..297 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 21125162..21125384 | 296..74 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 21122072..21122251 | 748..569 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 21121822..21122009 | 933..747 | 834 | 97.3 | Minus |
| 3R | 32079331 | 3R | 21126938..21126994 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:48:33 has no hits.
BO05402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:04 Download gff for
BO05402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-PA | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:17 Download gff for
BO05402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3412-PA | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:30 Download gff for
BO05402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1409 | 9..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:51 Download gff for
BO05402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1409 | 9..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:51 Download gff for
BO05402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21121822..21122007 | 749..933 | 97 | <- | Minus |
| 3R | 21122072..21122251 | 569..748 | 100 | <- | Minus |
| 3R | 21122322..21122593 | 297..568 | 100 | <- | Minus |
| 3R | 21125162..21125384 | 74..296 | 100 | <- | Minus |
| 3R | 21126938..21126998 | 9..73 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:30 Download gff for
BO05402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16947544..16947729 | 749..933 | 97 | <- | Minus |
| arm_3R | 16947794..16947973 | 569..748 | 100 | <- | Minus |
| arm_3R | 16948044..16948315 | 297..568 | 100 | <- | Minus |
| arm_3R | 16950884..16951106 | 74..296 | 100 | <- | Minus |
| arm_3R | 16952660..16952720 | 9..73 | 93 | | Minus |
BO05402.complete Sequence
1564 bp (1564 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630015
> BO05402.complete
GAAGTTATCAGTCGACATGATGAAAATGGAGACTGACAAAATAATGGACG
AAACCAACTCCAATGCACAGGCCTTCACAACCACTATGCTGTACGACCCG
GTGCGCAAGAAAGACTCATCGCCCACCTACCAAACGGAGCGGGAACTCTG
CTTTCAGTACTTCACCCAGTGGAGCGAGTCGGGCCAGGTGGACTTTGTGG
AGCACCTGCTGTCGCGCATGTGCCACTATCAACACGGACAGATCAATGCC
TATCTCAAGCCGATGCTCCAGCGGGACTTTATCACATTGCTGCCAATCAA
GGGTCTGGATCACATCGCAGAAAACATTTTGTCGTACTTGGATGCCGAAT
CGCTCAAATCATCCGAGCTGGTCTGCAAGGAATGGCTGCGCGTCATTTCC
GAGGGCATGCTCTGGAAGAAGCTCATCGAACGCAAGGTGCGCACAGATTC
CTTGTGGCGCGGACTGGCCGAGCGGCGTAATTGGATGCAGTACCTCTTCA
AGCCAAGACCGGGCCAGACTCAACGGCCACACTCATTCCATCGCGAGTTG
TTCCCCAAGATAATGAATGACATTGACAGCATAGAGAACAACTGGCGGAC
TGGCCGCCACATGCTGCGCCGCATCAACTGCCGGTCCGAGAACTCGAAGG
GTGTCTATTGTCTGCAGTACGATGACGGCAAGATTGTCTCCGGACTGAGG
GACAACACCATCAAGATCTGGGATCGCACGGATTTGCAGTGCGTTAAGAC
CCTAATGGGCCACACTGGATCGGTGCTGTGCCTGCAGTATGACGACAAGG
TGATCATCAGTGGCTCCAGCGACTCCACCGTCCGCGTGTGGGACGTCAAT
ACCGGCGAGATGGTCAACACCCTTATCCACCACTGCGAGGCGGTGCTGCA
CTTGCGCTTTAACAATGGCATGATGGTTACCTGCTCCAAGGATCGCTCCA
TCGCCGTCTGGGACATGACCTCACCCAGCGAGATTACGCTGCGGCGCGTC
CTTGTCGGTCACCGTGCCGCCGTCAATGTGGTGGACTTTGATGAGAAGTA
CATCGTGTCCGCCAGCGGGGATCGCACCATCAAGGTCTGGTCCACATCTA
GCTGTGAATTCGTGCGCACCTTGAATGGCCACAAGCGTGGCATCGCCTGC
CTACAGTACAGAGATCGCCTGGTGGTCAGCGGCAGCTCAGACAATTCCAT
AAGACTGTGGGACATTGAGTGCGGTGCCTGTTTACGTGTCCTGGAGGGCC
ATGAGGAATTGGTTCGCTGCATTCGTTTCGATACGAAACGAATCGTTAGC
GGTGCCTACGATGGCAAGATCAAGGTTTGGGATTTGGTCGCCGCCCTGGA
TCCAAGAGCAGCCTCCAATACTCTCTGTCTGAATACCCTTGTGGAACATA
CTGGTCGCGTATTTCGTTTGCAATTCGATGAGTTCCAGATTGTTAGCAGC
TCGCATGATGATACAATTTTGATTTGGGACTTTCTAAATTTCACACCCAA
TGAGAACAAGACCGGACGCACACCGTCACCGGCCTTGATGGAACATGCAA
GCTTTCTAGACCAT
BO05402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-RB | 1794 | CG3412-PB | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| slmb-RC | 1533 | CG3412-PC | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| slmb-RA | 1533 | CG3412-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-RB | 3492 | CG3412-RB | 492..2021 | 17..1546 | 7650 | 100 | Plus |
| slmb-RC | 2549 | CG3412-RC | 492..2021 | 17..1546 | 7650 | 100 | Plus |
| slmb-RA | 3492 | CG3412-RA | 492..2021 | 17..1546 | 7650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21121553..21122009 | 1203..747 | 2285 | 100 | Minus |
| 3R | 32079331 | 3R | 21122321..21122593 | 569..297 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 21125162..21125384 | 296..74 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 21121029..21121221 | 1394..1202 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 21122072..21122251 | 748..569 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 21120834..21120970 | 1529..1393 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 21126938..21126994 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:56:50 has no hits.
BO05402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:08 Download gff for
BO05402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 1..1533 | 17..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:31 Download gff for
BO05402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 480..2023 | 9..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:12 Download gff for
BO05402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 492..2021 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:08 Download gff for
BO05402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 480..2023 | 9..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:50 Download gff for
BO05402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 492..2021 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:50 Download gff for
BO05402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21125162..21125384 | 74..296 | 100 | <- | Minus |
| 3R | 21126938..21126994 | 17..73 | 100 | | Minus |
| 3R | 21120834..21120969 | 1394..1529 | 100 | <- | Minus |
| 3R | 21121030..21121219 | 1204..1393 | 100 | <- | Minus |
| 3R | 21121553..21122007 | 749..1203 | 100 | <- | Minus |
| 3R | 21122072..21122251 | 569..748 | 100 | <- | Minus |
| 3R | 21122322..21122593 | 297..568 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:12 Download gff for
BO05402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16946752..16946941 | 1204..1393 | 100 | <- | Minus |
| arm_3R | 16946556..16946691 | 1394..1529 | 100 | <- | Minus |
| arm_3R | 16947275..16947729 | 749..1203 | 100 | <- | Minus |
| arm_3R | 16947794..16947973 | 569..748 | 100 | <- | Minus |
| arm_3R | 16948044..16948315 | 297..568 | 100 | <- | Minus |
| arm_3R | 16950884..16951106 | 74..296 | 100 | <- | Minus |
| arm_3R | 16952660..16952716 | 17..73 | 100 | | Minus |
BO05402.pep Sequence
Translation from 16 to 1564
> BO05402.pep
MMKMETDKIMDETNSNAQAFTTTMLYDPVRKKDSSPTYQTERELCFQYFT
QWSESGQVDFVEHLLSRMCHYQHGQINAYLKPMLQRDFITLLPIKGLDHI
AENILSYLDAESLKSSELVCKEWLRVISEGMLWKKLIERKVRTDSLWRGL
AERRNWMQYLFKPRPGQTQRPHSFHRELFPKIMNDIDSIENNWRTGRHML
RRINCRSENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHT
GSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNN
GMMVTCSKDRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVSAS
GDRTIKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNSIRLWDI
ECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAAS
NTLCLNTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNFTPNENKTG
RTPSPALMEHASFLDH
BO05402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-PB | 597 | CG3412-PB | 1..514 | 1..514 | 2723 | 99.4 | Plus |
| slmb-PC | 510 | CG3412-PC | 1..510 | 1..510 | 2718 | 100 | Plus |
| slmb-PA | 510 | CG3412-PA | 1..510 | 1..510 | 2718 | 100 | Plus |
| ago-PA | 1326 | CG15010-PA | 852..1264 | 49..488 | 606 | 33.5 | Plus |
| ago-PB | 1326 | CG15010-PB | 852..1264 | 49..488 | 606 | 33.5 | Plus |
| ago-PA | 1326 | CG15010-PA | 1078..1274 | 213..409 | 365 | 35 | Plus |
| ago-PA | 1326 | CG15010-PA | 1208..1275 | 223..287 | 171 | 42.6 | Plus |
