Clone BO05406 Report

Search the DGRC for BO05406

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG4936-RA
Protein status:BO05406.pep: full length peptide match
Sequenced Size:1597

Clone Sequence Records

BO05406.3prime Sequence

880 bp (858 high quality bases) assembled on 2005-12-02

> BO05406.3prime
ATGGTCTAGAAAGCTTGCCATATCCAGGCCAACGATGTTGGCCGTGTCGT
AGGACACCAGCCCGGCTACGGATTCCCGTGCGGACTGGCCGCGCCTCTCG
TGGATGACCCGGTGGTTACGCAGTTTGTACGCCTGCGGGAATCCCTTGCC
GCACACATCGCAGACGTGCGGCTTCTCTCCCGTATGAATCATTTTGTGGA
ACTTCAAGGTGTTGGTGTAAGTGAATGTCTTGTGGCAAACATCGCACTCG
TAGGGTCGCTCGTTGGTGTGGATTCTGTGGTGCTTGTTACGCGTGGACAA
GTCGGCGAAGGCTGCCGGGCAATAGCTGCATTTGTACGGCCGATTTCCGG
TGTGGGTGTTCATGTGGCGTGCCAGCTGCTGAGCCTGGGCGAAGCAATGA
CCACAGATCTCGCACTCGTGCGGCTTCACGCCGGAGTGGACCTTGATGTG
CTCGGTAAGGCGACTCTGGGAGGGATACATGTTGCCGCAGACATCGCAGA
TGTACTTGAACTCCTTCTTGTCGCCAAGAAGGATCTTGTGGCCGCCTTTG
GTTTTAATGCCGGAATGCTTGCGCGCCAGCACCTCGCCAATCGAGATGTC
CTTCTCGGATTTGATGCTCATTTTGCTGCCAGCCGAATCACTGTTACCCC
GCCGTACCTTAAGTGGATTGCCGCGGTCAGTTGTCTTGGAGGTACTCGAT
TCTACAGCCACCGAGGCCGTCGATGTAGCTGACCTGCGGGGATTCACTCT
CCGCTTGGTGGCATTCCGCGCATGGATGGACGCGCGAACGCTTTTTGAGG
GAACGAACTCCTCTTCGGTTGAGTTCAGATCGACTTCCGCATCATCCTCG
TGGGCACTTTCGGTCAACTGATCATGCTCG

BO05406.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4936-PA 1566 CG4936-RA 702..1563 880..19 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4936-RA 1824 CG4936-RA 819..1680 880..19 4310 100 Minus
CG10889-RA 2176 CG10889-RA 1871..2015 19..163 725 100 Plus
trem-RA 1525 CG4413-RA 913..1299 504..118 570 76.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20032695..20033166 880..409 2360 100 Minus
3R 32079331 3R 20034042..20034186 163..19 725 100 Minus
3R 32079331 3R 20033324..20033458 409..275 675 100 Minus
3R 32079331 3R 20033513..20033626 277..164 570 100 Minus
3R 32079331 3R 20029894..20030004 167..277 240 81.1 Plus
Blast to na_te.dros performed on 2015-02-13 05:49:24 has no hits.

BO05406.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:10 Download gff for BO05406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4936-PA 702..1566 15..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:28 Download gff for BO05406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4936-PA 702..1566 15..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:39 Download gff for BO05406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4936-RA 822..1691 9..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:01 Download gff for BO05406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4936-RA 819..1688 9..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:01 Download gff for BO05406.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20032695..20033165 410..880 100 -> Minus
3R 20033324..20033458 275..409 100 -> Minus
3R 20033516..20033626 164..274 100 -> Minus
3R 20034042..20034194 9..163 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:39 Download gff for BO05406.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15858417..15858887 410..880 100 -> Minus
arm_3R 15859046..15859180 275..409 100 -> Minus
arm_3R 15859238..15859348 164..274 100 -> Minus
arm_3R 15859764..15859916 9..163 97   Minus

BO05406.5prime Sequence

949 bp (830 high quality bases) assembled on 2005-11-29

> BO05406.5prime
GAAGTTATCAGTCGACATGAGAGACTCGGCAGCACATGCGAGTCCGGCGG
CAGCGGCAACGAGCACGCAGAAGTGGATCGTTTGCCGGGTTTGCCTGCAG
CAGCCCAAGGAGCCCATGGCCAGCATTTTCAACGACGATTCGGAAAAGGA
TCTGACCCACATGATTCGCGAGTGCGGCGGAGTGCCCATCAAACAGTTCG
ATCACTATCCGGACAAGATATGCGAGAAGTGCTTCAAGGTGCTGAAAATG
GCATTTAAGTTTCGAGAGACCTGCCAAAGATCGTACGGCCATCTGCGCCA
GTTCGTTGGACCCGTAGAGGTGGAGCAGCGACCACCGGAGAAAAAGGGCT
CAGAGACAGCCACCAAGCTGGAGCCGGATGTCGATCCCGATGAGGCGGAG
CAGGAGCCAGAGCATGACGAGGAAGACGAGGATGTGGACCTGGACGAGAG
CCACTATGCCGAGGCGGACGATGCCGCCGAAACGCAGGGTGGTGTCTTCC
ATGACGAGATTGAGGATGGTATCCTCGTTGAGCTGGAAAAGGATCGGATT
GTGCACGTGAAGAACGAGCAGGTGGAGGAGGACGGCATAATCGAGGAGGT
TTATGACGTGTATGAGACGTACGAGGGCGACCTCATCCCAGATCAGGGCT
ATGACCACGAGATGGCCGATCAAGCCCTGTCCGAGTTATCTGCCGAAATC
GAATACCTGGACCAGGTCGAGCATGATCAGTTGACCGAAAGTGCCCACGA
GGATGATGCGGAAGTCGATCTGAACTCAACCGAAGAGGAGTTCGTTCCCT
CAAAAAGCGTTCGCGCGTCCATCCATGCGCGGAATGCCAACCAGCGGAGA
GTGAATCCCCGCAGGTCAGCTACATCGACGGCCTCGGTGGCTGTAGAATC
GAGTACCTCAAGACAACTGACCGCGGCAATCCACTTAAGGTACGGCGGG

BO05406.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4936-PA 1566 CG4936-RA 1..893 17..909 4415 99.7 Plus
CG4936-PA 1566 CG4936-RA 894..934 909..949 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4936-RA 1824 CG4936-RA 118..1051 17..949 4615 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20032165..20032927 188..949 3735 99.6 Plus
3R 32079331 3R 20031940..20032110 17..187 855 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:55:39 has no hits.

BO05406.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:11 Download gff for BO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4936-PA 1..934 17..949 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:29 Download gff for BO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4936-PA 1..934 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:26 Download gff for BO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4936-RA 113..1054 8..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:54 Download gff for BO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4936-RA 110..1051 8..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:54 Download gff for BO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20031932..20032110 8..187 98 -> Plus
3R 20032165..20032927 188..949 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:26 Download gff for BO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15857654..15857832 8..187 98 -> Plus
arm_3R 15857887..15858649 188..949 99   Plus

BO05406.complete Sequence

1597 bp (1597 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630016

> BO05406.complete
GAAGTTATCAGTCGACATGAGAGACTCGGCAGCACATGCGAGTCCGGCGG
CAGCGGCAACGAGCACGCAGAAGTGGATCGTTTGCCGGGTTTGCCTGCAG
CAGCCCAAGGAGCCCATGGCCAGCATTTTCAACGACGATTCGGAAAAGGA
TCTGACCCACATGATTCGCGAGTGCGGCGGAGTGCCCATCAAACAGTTCG
ATCACTATCCGGACAAGATATGCGAGAAGTGCTTCAAGGTGCTGAAAATG
GCATTTAAGTTTCGAGAGACCTGCCAAAGATCGTACGGCCATCTGCGCCA
GTTCGTTGGACCCGTAGAGGTGGAGCAGCGACCACCGGAGAAAAAGGGCT
CAGAGACAGCCACCAAGCTGGAGCCGGATGTCGATCCCGATGAGGCGGAG
CAGGAGCCAGAGCATGACGAGGAAGACGAGGATGTGGACCTGGACGAGAG
CCACTATGCCGAGGCGGACGATGCCGCCGAAACGCAGGGTGGTGTCTTCC
ATGACGAGATTGAGGATGGTATCCTCGTTGAGCTGGAAAAGGATCGGATT
GTGCACGTGAAGAACGAGCAGGTGGAGGAGGACGGCATAATCGAGGAGGT
TTATGACGTGTATGAGACGTACGAGGGCGACCTCATCCCAGATCAGGGCT
ATGACCACGAGATGGCCGATCAAGCCCTGTCCGAGTTATCTGCCGAAATC
GAATACCTGGACCAGGTCGAGCATGATCAGTTGACCGAAAGTGCCCACGA
GGATGATGCGGAAGTCGATCTGAACTCAACCGAAGAGGAGTTCGTTCCCT
CAAAAAGCGTTCGCGCGTCCATCCATGCGCGGAATGCCACCAAGCGGAGA
GTGAATCCCCGCAGGTCAGCTACATCGACGGCCTCGGTGGCTGTAGAATC
GAGTACCTCCAAGACAACTGACCGCGGCAATCCACTTAAGGTACGGCGGG
GTAACAGTGATTCGGCTGGCAGCAAAATGAGCATCAAATCCGAGAAGGAC
ATCTCGATTGGCGAGGTGCTGGCGCGCAAGCATTCCGGCATTAAAACCAA
AGGCGGCCACAAGATCCTTCTTGGCGACAAGAAGGAGTTCAAGTACATCT
GCGATGTCTGCGGCAACATGTATCCCTCCCAGAGTCGCCTTACCGAGCAC
ATCAAGGTCCACTCCGGCGTGAAGCCGCACGAGTGCGAGATCTGTGGTCA
TTGCTTCGCCCAGGCTCAGCAGCTGGCACGCCACATGAACACCCACACCG
GAAATCGGCCGTACAAATGCAGCTATTGCCCGGCAGCCTTCGCCGACTTG
TCCACGCGTAACAAGCACCACAGAATCCACACCAACGAGCGACCCTACGA
GTGCGATGTTTGCCACAAGACATTCACTTACACCAACACCTTGAAGTTCC
ACAAAATGATTCATACGGGAGAGAAGCCGCACGTCTGCGATGTGTGCGGC
AAGGGATTCCCGCAGGCGTACAAACTGCGTAACCACCGGGTCATCCACGA
GAGGCGCGGCCAGTCCGCACGGGAATCCGTAGCCGGGCTGGTGTCCTACG
ACACGGCCAACATCGTTGGCCTGGATATGGCAAGCTTTCTAGACCAT

BO05406.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4936-RA 1566 CG4936-PA 1..1563 17..1579 7815 100 Plus
trem-RA 1320 CG4413-PA 814..1200 1094..1480 570 76.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4936-RA 1824 CG4936-RA 118..1680 17..1579 7815 100 Plus
CG10889-RA 2176 CG10889-RA 1871..2015 1579..1435 725 100 Minus
trem-RA 1525 CG4413-RA 913..1299 1094..1480 570 76.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20032165..20033166 188..1189 5010 100 Plus
3R 32079331 3R 20031940..20032110 17..187 855 100 Plus
3R 32079331 3R 20034042..20034186 1435..1579 725 100 Plus
3R 32079331 3R 20033324..20033458 1189..1323 675 100 Plus
3R 32079331 3R 20033513..20033626 1321..1434 570 100 Plus
3R 32079331 3R 20029894..20030004 1431..1321 240 81.1 Minus
Blast to na_te.dros performed on 2014-11-27 20:01:21 has no hits.

BO05406.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:09 Download gff for BO05406.complete
Subject Subject Range Query Range Percent Splice Strand
CG4936-RA 1..1566 17..1583 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:34 Download gff for BO05406.complete
Subject Subject Range Query Range Percent Splice Strand
CG4936-RA 113..1691 8..1589 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:46 Download gff for BO05406.complete
Subject Subject Range Query Range Percent Splice Strand
CG4936-RA 121..1683 17..1581 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:09 Download gff for BO05406.complete
Subject Subject Range Query Range Percent Splice Strand
CG4936-RA 113..1691 8..1589 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:59 Download gff for BO05406.complete
Subject Subject Range Query Range Percent Splice Strand
CG4936-RA 118..1680 17..1581 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:59 Download gff for BO05406.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20031940..20032110 17..187 100 -> Plus
3R 20032165..20033165 188..1188 100 -> Plus
3R 20033324..20033458 1189..1323 100 -> Plus
3R 20033516..20033626 1324..1434 100 -> Plus
3R 20034042..20034186 1435..1581 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:46 Download gff for BO05406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15857662..15857832 17..187 100 -> Plus
arm_3R 15857887..15858887 188..1188 100 -> Plus
arm_3R 15859046..15859180 1189..1323 100 -> Plus
arm_3R 15859238..15859348 1324..1434 100 -> Plus
arm_3R 15859764..15859908 1435..1581 98   Plus

BO05406.pep Sequence

Translation from 16 to 1597

> BO05406.pep
MRDSAAHASPAAAATSTQKWIVCRVCLQQPKEPMASIFNDDSEKDLTHMI
RECGGVPIKQFDHYPDKICEKCFKVLKMAFKFRETCQRSYGHLRQFVGPV
EVEQRPPEKKGSETATKLEPDVDPDEAEQEPEHDEEDEDVDLDESHYAEA
DDAAETQGGVFHDEIEDGILVELEKDRIVHVKNEQVEEDGIIEEVYDVYE
TYEGDLIPDQGYDHEMADQALSELSAEIEYLDQVEHDQLTESAHEDDAEV
DLNSTEEEFVPSKSVRASIHARNATKRRVNPRRSATSTASVAVESSTSKT
TDRGNPLKVRRGNSDSAGSKMSIKSEKDISIGEVLARKHSGIKTKGGHKI
LLGDKKEFKYICDVCGNMYPSQSRLTEHIKVHSGVKPHECEICGHCFAQA
QQLARHMNTHTGNRPYKCSYCPAAFADLSTRNKHHRIHTNERPYECDVCH
KTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNHRVIHERRGQS
ARESVAGLVSYDTANIVGLDMASFLDH

BO05406.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4936-PA 521 CG4936-PA 1..521 1..521 2781 100 Plus
trem-PA 439 CG4413-PA 5..409 16..497 819 40 Plus
CG4854-PA 319 CG4854-PA 178..314 360..496 460 56.2 Plus
CG14711-PA 377 CG14711-PA 3..376 19..502 451 27.6 Plus
CG14710-PB 415 CG14710-PB 10..392 23..490 424 26.4 Plus