Clone BO05407 Report

Search the DGRC for BO05407

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG7175-RA
Protein status:BO05407.pep: validated full length
Sequenced Size:1714

Clone Sequence Records

BO05407.3prime Sequence

936 bp (779 high quality bases) assembled on 2005-12-02

> BO05407.3prime
ATGGTCTAGAAAGCTTGCCAAGCGCTCCATAATCATTTTCTCTGCAGGCT
TTACGCCGTACTTGTAGACCTTATTGAGACTTTCCGGAAAGTCGGGCAGT
AGATTGTTGAAGTTCTCCACGTGATGTGTATGCTGCTCCGTCCAGATGCC
GTCGCCCGTGAAGTGGAACTCCGATTCGATTAGGTAGAGAATGAGAGTCA
GAATTTCGTTGTTGCTTAACGAATCGAAATTCGCCACTGGCAACTGCAGA
TCTTCTTGCGCATCGGGTGATTGCAAAAGGAGCATTTTTTCTTCAATACG
TTTGATGGGATAAAGCAGCAAGTGTATGTTCGCAAATATCTCATTAAGTT
TAAACTTTTTGCTGCGTAAGTACTCCAGACACTGCTTCACGTGCAGCAAT
GGTATATGGCACCAGTTGGGATGGCGAGAGAGAAGATTGCGCAGCACTTG
CACGTCCTTCCCCAAAACATTACTCAAGTAGACGACTATATCGCGGCCTT
TAGTACGATCTGAGCCATCTCTGGCAAATTTAGCGAACGCCTCGGACCCA
CAAGAAAGGATGTGCAAGGAGGCGCACCGAACCCGCAGTTGATTGAGATA
ATCCAGACGCAGTCGCGCCTTGTTCTGGTAGTGGACCAGTCTCAGGATTC
GCGGATTGGTACCCAAGACTTGAAACTCCTCGATCTCCTGCAGATCCCTT
AGTCGCTCCAGAACCGTATCCGGTCCAAGGGTGAGCACTTCCAGGCAGCG
GAGAACGGCATCCTCACTGATGCCGAAAGCGTGGACGTGCTGCAGTGTTT
GCTTCAAGCTATCGCAGGTGGACATCAAAATCTTGGGTCTGCGAAAGCCG
ATTTCTCGTATGTCCTGCGAGTCAATGGTAGGCACCTCTCGCAAGATGCG
CCGCACGTTATCTGCTTCCCGATAGAGCAGAAAACT

BO05407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7175-PA 1683 CG7175-RA 763..1680 936..19 4515 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-RA 1999 CG7175-RA 1015..1932 936..19 4545 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18222210..18222616 530..936 1990 99.3 Plus
2R 25286936 2R 3524935..3525428 448..936 1970 93.7 Plus
2R 25286936 2R 3524597..3524938 19..362 1520 96.8 Plus
3R 32079331 3R 18221589..18221874 19..304 1430 100 Plus
3R 32079331 3R 18221934..18222158 305..529 1125 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:38:16 has no hits.

BO05407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:13 Download gff for BO05407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7175-PA 763..1683 18..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:31 Download gff for BO05407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7175-PA 763..1683 18..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:54 Download gff for BO05407.3prime
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 1015..1932 19..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:36 Download gff for BO05407.3prime
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 1015..1932 19..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:36 Download gff for BO05407.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18221589..18221874 19..304 100 <- Plus
3R 18221934..18222158 305..529 100 <- Plus
3R 18222210..18222616 530..936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:54 Download gff for BO05407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14047311..14047596 19..304 100 <- Plus
arm_3R 14047656..14047880 305..529 100 <- Plus
arm_3R 14047932..14048338 530..936 99   Plus

BO05407.5prime Sequence

908 bp (848 high quality bases) assembled on 2005-11-29

> BO05407.5prime
GAAGTTATCAGTCGACATGCTGCGCAACGGCCAGAATCAAGCGCAATTGC
TGGCCCGGAGCCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGG
GTCAGCAGTAAGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGAC
AGTCGAGATTCCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAA
CTCTGGGTAGTTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCA
GAGCTCAAGACGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTT
GAAATCACTGGACTATAGTGTGGACGACATCATAGCGAAACCCATGATCA
TCTATTATGGCGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAG
TGCGGCTTCCACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGT
GGTCAACAAGCCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCG
ATGTGAAGGTGGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTG
CCGGTGGATTTACGGGAGCTGGAGAGTGAGACCCTCACACTGAAGAGCTT
GAGACAATCCCTGATCAACGCTTACCTGCGTGAACGTCTCCAGATGGACG
ACAACGATCTACAGAAGCTGTGGCGCGTTTACACGCGCATCCGCCACAAG
AGTTTTCGAGCAGTGCAGGACACCATTGAACTGCTGACCAAAGAGTTTAA
TTTTTCCGCCGAGCGGCTAAGGAAGAACAGTTTTCTGCTCTATTCGGAAG
CAGATAACGTGCGGCGCATCCTGCGAGAGGTGCCTACCATTGACTCGCAG
GACATACGAGAAATCGGCTTTCGCAGACCCAAGATTTTGATGTCCACCTG
CGATAGCT

BO05407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7175-PA 1683 CG7175-RA 1..892 17..908 4460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-RA 1999 CG7175-RA 253..1144 17..908 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18222487..18223189 908..206 3515 100 Minus
2R 25286936 2R 3525316..3526041 891..140 2940 93.4 Minus
3R 32079331 3R 18223238..18223430 209..17 965 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:41:12 has no hits.

BO05407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:13 Download gff for BO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7175-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:32 Download gff for BO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7175-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:33 Download gff for BO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 253..1144 17..908 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:42 Download gff for BO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 253..1144 17..908 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:42 Download gff for BO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18222487..18223188 207..908 100 <- Minus
3R 18223241..18223430 17..206 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:33 Download gff for BO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14048963..14049152 17..206 100   Minus
arm_3R 14048209..14048910 207..908 100 <- Minus

BO05407.complete Sequence

1714 bp (1714 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630017

> BO05407.complete
GAAGTTATCAGTCGACATGCTGCGCAACGGCCAGAATCAAGCGCAATTGC
TGGCCCGGAGCCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGG
GTCAGCAGTAAGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGAC
AGTCGAGATTCCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAA
CTCTGGGTAGTTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCA
GAGCTCAAGACGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTT
GAAATCACTGGACTATAGTGTGGACGACATCATAGCGAAACCCATGATCA
TCTATTATGGCGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAG
TGCGGCTTCCACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGT
GGTCAACAAGCCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCG
ATGTGAAGGTGGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTG
CCGGTGGATTTACGGGAGCTGGAGAGTGAGACCCTCACACTGAAGAGCTT
GAGACAATCCCTGATCAACGCTTACCTGCGTGAACGTCTCCAGATGGACG
ACAACGATCTACAGAAGCTGTGGCGCGTTTACACGCGCATCCGCCACAAG
AGTTTTCGAGCAGTGCAGGACACCATTGAACTGCTGACCAAAGAGTTTAA
TTTTTCCGCCGAGCGGCTAAGGAAGAACAGTTTTCTGCTCTATTCGGAAG
CAGATAACGTGCGGCGCATCCTGCGAGAGGTGCCTACCATTGACTCGCAG
GACATACGAGAAATCGGCTTTCGCAGACCCAAGATTTTGATGTCCACCTG
CGATAGCTTGAAGCAAACACTGCAGCACGTCCACGCTTTCGGCATCAGTG
AGGATGCCGTTCTCCGCTGCCTGGAAGTGCTCACCCTTGGACCGGATACG
GTTCTGGAGCGACTAAGGGATCTGCAGGAGATCGAGGAGTTTCAAGTCTT
GGGTACCAATCCGCGAATCCTGAGACTGGTCCACTACCAGAACAAGGCGC
GACTGCGTCTGGATTATCTCAATCAACTGCGGGTTCGGTGCGCCTCCTTG
CACATCCTTTCTTGTGGGTCCGAGGCGTTCGCTAAATTTGCCAGAGATGG
CTCAGATCGTACTAAAGGCCGCGATATAGTCGTCTACTTGAGTAATGTTT
TGGGGAAGGACGTGCAAGTGCTGCGCAATCTTCTCTCTCGCCATCCCAAC
TGGTGCCATATACCATTGCTGCACGTGAAGCAGTGTCTGGAGTACTTACG
CAGCAAAAAGTTTAAACTTAATGAGATATTTGCGAACATACACTTGCTGC
TTTATCCCATCAAACGTATTGAAGAAAAAATGCTCCTTTTGCAATCACCC
GATGCGCAAGAAGATCTGCAGTTGCCAGTGGCGAATTTCGATTCGTTAAG
CAACAACGAAATTCTGACTCTCATTCTCTACCTAATCGAATCGGAGTTCC
ACTTCACGGGCGACGGCATCTGGACGGAGCAGCATACACATCACGTGGAG
AACTTCAACAATCTACTGCCCGACTTTCCGGAAAGTCTCAATAAGGTCTA
CAAGTACGGCGTAAAGCCTGCAGAGAAAATGATTATGGAGCGCTTGGCAA
GCTTTCTAGACCAT

BO05407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-RA 1683 CG7175-PA 1..1680 17..1696 8400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-RA 1999 CG7175-RA 253..1932 17..1696 8400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18222210..18223189 1185..206 4900 100 Minus
2R 25286936 2R 3524935..3526041 1267..140 4450 93.5 Minus
2R 25286936 2R 3524597..3524938 1696..1353 1520 96.8 Minus
3R 32079331 3R 18221589..18221874 1696..1411 1430 100 Minus
3R 32079331 3R 18221934..18222158 1410..1186 1125 100 Minus
3R 32079331 3R 18223238..18223430 209..17 965 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:53:38 has no hits.

BO05407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:10 Download gff for BO05407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 1..1683 17..1697 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:35 Download gff for BO05407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 252..1931 17..1696 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:34 Download gff for BO05407.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 253..1932 17..1698 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:10 Download gff for BO05407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 252..1931 17..1696 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:04 Download gff for BO05407.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 253..1932 17..1698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:04 Download gff for BO05407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18221934..18222158 1186..1410 100 <- Minus
3R 18223241..18223430 17..206 100   Minus
3R 18221587..18221874 1411..1698 99 <- Minus
3R 18222210..18223188 207..1185 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:34 Download gff for BO05407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14048963..14049152 17..206 100   Minus
arm_3R 14047309..14047596 1411..1698 99 <- Minus
arm_3R 14047656..14047880 1186..1410 100 <- Minus
arm_3R 14047932..14048910 207..1185 100 <- Minus

BO05407.pep Sequence

Translation from 16 to 1714

> BO05407.pep
MLRNGQNQAQLLARSLGQLARGMASSKRVSSKKEDLKPKLPKPPTVEIPM
EEPLNASYLSKTLGSSYRSWAAALEKHPELKTLKRKDLLSSYDTLKSLDY
SVDDIIAKPMIIYYGATTLANRHSVLQECGFHNVTVQTLAKYVTVVNKPI
EVLKAHNYIPFDVKVAERLAGYFKDIKLPVDLRELESETLTLKSLRQSLI
NAYLRERLQMDDNDLQKLWRVYTRIRHKSFRAVQDTIELLTKEFNFSAER
LRKNSFLLYSEADNVRRILREVPTIDSQDIREIGFRRPKILMSTCDSLKQ
TLQHVHAFGISEDAVLRCLEVLTLGPDTVLERLRDLQEIEEFQVLGTNPR
ILRLVHYQNKARLRLDYLNQLRVRCASLHILSCGSEAFAKFARDGSDRTK
GRDIVVYLSNVLGKDVQVLRNLLSRHPNWCHIPLLHVKQCLEYLRSKKFK
LNEIFANIHLLLYPIKRIEEKMLLLQSPDAQEDLQLPVANFDSLSNNEIL
TLILYLIESEFHFTGDGIWTEQHTHHVENFNNLLPDFPESLNKVYKYGVK
PAEKMIMERLASFLDH

BO05407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-PA 560 CG7175-PA 1..560 1..560 2865 100 Plus