Clone Sequence Records
BO05407.3prime Sequence
936 bp (779 high quality bases) assembled on 2005-12-02
> BO05407.3prime
ATGGTCTAGAAAGCTTGCCAAGCGCTCCATAATCATTTTCTCTGCAGGCT
TTACGCCGTACTTGTAGACCTTATTGAGACTTTCCGGAAAGTCGGGCAGT
AGATTGTTGAAGTTCTCCACGTGATGTGTATGCTGCTCCGTCCAGATGCC
GTCGCCCGTGAAGTGGAACTCCGATTCGATTAGGTAGAGAATGAGAGTCA
GAATTTCGTTGTTGCTTAACGAATCGAAATTCGCCACTGGCAACTGCAGA
TCTTCTTGCGCATCGGGTGATTGCAAAAGGAGCATTTTTTCTTCAATACG
TTTGATGGGATAAAGCAGCAAGTGTATGTTCGCAAATATCTCATTAAGTT
TAAACTTTTTGCTGCGTAAGTACTCCAGACACTGCTTCACGTGCAGCAAT
GGTATATGGCACCAGTTGGGATGGCGAGAGAGAAGATTGCGCAGCACTTG
CACGTCCTTCCCCAAAACATTACTCAAGTAGACGACTATATCGCGGCCTT
TAGTACGATCTGAGCCATCTCTGGCAAATTTAGCGAACGCCTCGGACCCA
CAAGAAAGGATGTGCAAGGAGGCGCACCGAACCCGCAGTTGATTGAGATA
ATCCAGACGCAGTCGCGCCTTGTTCTGGTAGTGGACCAGTCTCAGGATTC
GCGGATTGGTACCCAAGACTTGAAACTCCTCGATCTCCTGCAGATCCCTT
AGTCGCTCCAGAACCGTATCCGGTCCAAGGGTGAGCACTTCCAGGCAGCG
GAGAACGGCATCCTCACTGATGCCGAAAGCGTGGACGTGCTGCAGTGTTT
GCTTCAAGCTATCGCAGGTGGACATCAAAATCTTGGGTCTGCGAAAGCCG
ATTTCTCGTATGTCCTGCGAGTCAATGGTAGGCACCTCTCGCAAGATGCG
CCGCACGTTATCTGCTTCCCGATAGAGCAGAAAACT
BO05407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7175-PA | 1683 | CG7175-RA | 763..1680 | 936..19 | 4515 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTerf5-RA | 1999 | CG7175-RA | 1015..1932 | 936..19 | 4545 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18222210..18222616 | 530..936 | 1990 | 99.3 | Plus |
2R | 25286936 | 2R | 3524935..3525428 | 448..936 | 1970 | 93.7 | Plus |
2R | 25286936 | 2R | 3524597..3524938 | 19..362 | 1520 | 96.8 | Plus |
3R | 32079331 | 3R | 18221589..18221874 | 19..304 | 1430 | 100 | Plus |
3R | 32079331 | 3R | 18221934..18222158 | 305..529 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:38:16 has no hits.
BO05407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:13 Download gff for
BO05407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7175-PA | 763..1683 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:31 Download gff for
BO05407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7175-PA | 763..1683 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:54 Download gff for
BO05407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTerf5-RA | 1015..1932 | 19..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:36 Download gff for
BO05407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTerf5-RA | 1015..1932 | 19..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:36 Download gff for
BO05407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18221589..18221874 | 19..304 | 100 | <- | Plus |
3R | 18221934..18222158 | 305..529 | 100 | <- | Plus |
3R | 18222210..18222616 | 530..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:54 Download gff for
BO05407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14047311..14047596 | 19..304 | 100 | <- | Plus |
arm_3R | 14047656..14047880 | 305..529 | 100 | <- | Plus |
arm_3R | 14047932..14048338 | 530..936 | 99 | | Plus |
BO05407.5prime Sequence
908 bp (848 high quality bases) assembled on 2005-11-29
> BO05407.5prime
GAAGTTATCAGTCGACATGCTGCGCAACGGCCAGAATCAAGCGCAATTGC
TGGCCCGGAGCCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGG
GTCAGCAGTAAGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGAC
AGTCGAGATTCCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAA
CTCTGGGTAGTTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCA
GAGCTCAAGACGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTT
GAAATCACTGGACTATAGTGTGGACGACATCATAGCGAAACCCATGATCA
TCTATTATGGCGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAG
TGCGGCTTCCACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGT
GGTCAACAAGCCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCG
ATGTGAAGGTGGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTG
CCGGTGGATTTACGGGAGCTGGAGAGTGAGACCCTCACACTGAAGAGCTT
GAGACAATCCCTGATCAACGCTTACCTGCGTGAACGTCTCCAGATGGACG
ACAACGATCTACAGAAGCTGTGGCGCGTTTACACGCGCATCCGCCACAAG
AGTTTTCGAGCAGTGCAGGACACCATTGAACTGCTGACCAAAGAGTTTAA
TTTTTCCGCCGAGCGGCTAAGGAAGAACAGTTTTCTGCTCTATTCGGAAG
CAGATAACGTGCGGCGCATCCTGCGAGAGGTGCCTACCATTGACTCGCAG
GACATACGAGAAATCGGCTTTCGCAGACCCAAGATTTTGATGTCCACCTG
CGATAGCT
BO05407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7175-PA | 1683 | CG7175-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTerf5-RA | 1999 | CG7175-RA | 253..1144 | 17..908 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18222487..18223189 | 908..206 | 3515 | 100 | Minus |
2R | 25286936 | 2R | 3525316..3526041 | 891..140 | 2940 | 93.4 | Minus |
3R | 32079331 | 3R | 18223238..18223430 | 209..17 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:41:12 has no hits.
BO05407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:13 Download gff for
BO05407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7175-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:32 Download gff for
BO05407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7175-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:33 Download gff for
BO05407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTerf5-RA | 253..1144 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:42 Download gff for
BO05407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTerf5-RA | 253..1144 | 17..908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:42 Download gff for
BO05407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18222487..18223188 | 207..908 | 100 | <- | Minus |
3R | 18223241..18223430 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:33 Download gff for
BO05407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14048963..14049152 | 17..206 | 100 | | Minus |
arm_3R | 14048209..14048910 | 207..908 | 100 | <- | Minus |
BO05407.complete Sequence
1714 bp (1714 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630017
> BO05407.complete
GAAGTTATCAGTCGACATGCTGCGCAACGGCCAGAATCAAGCGCAATTGC
TGGCCCGGAGCCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGG
GTCAGCAGTAAGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGAC
AGTCGAGATTCCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAA
CTCTGGGTAGTTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCA
GAGCTCAAGACGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTT
GAAATCACTGGACTATAGTGTGGACGACATCATAGCGAAACCCATGATCA
TCTATTATGGCGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAG
TGCGGCTTCCACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGT
GGTCAACAAGCCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCG
ATGTGAAGGTGGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTG
CCGGTGGATTTACGGGAGCTGGAGAGTGAGACCCTCACACTGAAGAGCTT
GAGACAATCCCTGATCAACGCTTACCTGCGTGAACGTCTCCAGATGGACG
ACAACGATCTACAGAAGCTGTGGCGCGTTTACACGCGCATCCGCCACAAG
AGTTTTCGAGCAGTGCAGGACACCATTGAACTGCTGACCAAAGAGTTTAA
TTTTTCCGCCGAGCGGCTAAGGAAGAACAGTTTTCTGCTCTATTCGGAAG
CAGATAACGTGCGGCGCATCCTGCGAGAGGTGCCTACCATTGACTCGCAG
GACATACGAGAAATCGGCTTTCGCAGACCCAAGATTTTGATGTCCACCTG
CGATAGCTTGAAGCAAACACTGCAGCACGTCCACGCTTTCGGCATCAGTG
AGGATGCCGTTCTCCGCTGCCTGGAAGTGCTCACCCTTGGACCGGATACG
GTTCTGGAGCGACTAAGGGATCTGCAGGAGATCGAGGAGTTTCAAGTCTT
GGGTACCAATCCGCGAATCCTGAGACTGGTCCACTACCAGAACAAGGCGC
GACTGCGTCTGGATTATCTCAATCAACTGCGGGTTCGGTGCGCCTCCTTG
CACATCCTTTCTTGTGGGTCCGAGGCGTTCGCTAAATTTGCCAGAGATGG
CTCAGATCGTACTAAAGGCCGCGATATAGTCGTCTACTTGAGTAATGTTT
TGGGGAAGGACGTGCAAGTGCTGCGCAATCTTCTCTCTCGCCATCCCAAC
TGGTGCCATATACCATTGCTGCACGTGAAGCAGTGTCTGGAGTACTTACG
CAGCAAAAAGTTTAAACTTAATGAGATATTTGCGAACATACACTTGCTGC
TTTATCCCATCAAACGTATTGAAGAAAAAATGCTCCTTTTGCAATCACCC
GATGCGCAAGAAGATCTGCAGTTGCCAGTGGCGAATTTCGATTCGTTAAG
CAACAACGAAATTCTGACTCTCATTCTCTACCTAATCGAATCGGAGTTCC
ACTTCACGGGCGACGGCATCTGGACGGAGCAGCATACACATCACGTGGAG
AACTTCAACAATCTACTGCCCGACTTTCCGGAAAGTCTCAATAAGGTCTA
CAAGTACGGCGTAAAGCCTGCAGAGAAAATGATTATGGAGCGCTTGGCAA
GCTTTCTAGACCAT
BO05407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTerf5-RA | 1683 | CG7175-PA | 1..1680 | 17..1696 | 8400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTerf5-RA | 1999 | CG7175-RA | 253..1932 | 17..1696 | 8400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18222210..18223189 | 1185..206 | 4900 | 100 | Minus |
2R | 25286936 | 2R | 3524935..3526041 | 1267..140 | 4450 | 93.5 | Minus |
2R | 25286936 | 2R | 3524597..3524938 | 1696..1353 | 1520 | 96.8 | Minus |
3R | 32079331 | 3R | 18221589..18221874 | 1696..1411 | 1430 | 100 | Minus |
3R | 32079331 | 3R | 18221934..18222158 | 1410..1186 | 1125 | 100 | Minus |
3R | 32079331 | 3R | 18223238..18223430 | 209..17 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:53:38 has no hits.
BO05407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:10 Download gff for
BO05407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7175-RA | 1..1683 | 17..1697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:35 Download gff for
BO05407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7175-RA | 252..1931 | 17..1696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:34 Download gff for
BO05407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTerf5-RA | 253..1932 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:10 Download gff for
BO05407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7175-RA | 252..1931 | 17..1696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:04 Download gff for
BO05407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTerf5-RA | 253..1932 | 17..1698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:04 Download gff for
BO05407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18221934..18222158 | 1186..1410 | 100 | <- | Minus |
3R | 18223241..18223430 | 17..206 | 100 | | Minus |
3R | 18221587..18221874 | 1411..1698 | 99 | <- | Minus |
3R | 18222210..18223188 | 207..1185 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:34 Download gff for
BO05407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14048963..14049152 | 17..206 | 100 | | Minus |
arm_3R | 14047309..14047596 | 1411..1698 | 99 | <- | Minus |
arm_3R | 14047656..14047880 | 1186..1410 | 100 | <- | Minus |
arm_3R | 14047932..14048910 | 207..1185 | 100 | <- | Minus |
BO05407.pep Sequence
Translation from 16 to 1714
> BO05407.pep
MLRNGQNQAQLLARSLGQLARGMASSKRVSSKKEDLKPKLPKPPTVEIPM
EEPLNASYLSKTLGSSYRSWAAALEKHPELKTLKRKDLLSSYDTLKSLDY
SVDDIIAKPMIIYYGATTLANRHSVLQECGFHNVTVQTLAKYVTVVNKPI
EVLKAHNYIPFDVKVAERLAGYFKDIKLPVDLRELESETLTLKSLRQSLI
NAYLRERLQMDDNDLQKLWRVYTRIRHKSFRAVQDTIELLTKEFNFSAER
LRKNSFLLYSEADNVRRILREVPTIDSQDIREIGFRRPKILMSTCDSLKQ
TLQHVHAFGISEDAVLRCLEVLTLGPDTVLERLRDLQEIEEFQVLGTNPR
ILRLVHYQNKARLRLDYLNQLRVRCASLHILSCGSEAFAKFARDGSDRTK
GRDIVVYLSNVLGKDVQVLRNLLSRHPNWCHIPLLHVKQCLEYLRSKKFK
LNEIFANIHLLLYPIKRIEEKMLLLQSPDAQEDLQLPVANFDSLSNNEIL
TLILYLIESEFHFTGDGIWTEQHTHHVENFNNLLPDFPESLNKVYKYGVK
PAEKMIMERLASFLDH
BO05407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTerf5-PA | 560 | CG7175-PA | 1..560 | 1..560 | 2865 | 100 | Plus |