Clone Sequence Records
BO05408.3prime Sequence
903 bp (806 high quality bases) assembled on 2005-12-02
> BO05408.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTGCCACCTGGCTGTCCAGAACGGGTG
TGATTGTCTTGCCTCCGAAGATCTGACCCCAGCCAATCAAACGCCAATGG
TTCTCCACACGTCTGCTGAGTGCAATCTTCTCGCCCTTCTCCGTGCACAC
AGGCGTCGTAAGAACGATCTTGGCCAAATCACCTTTGGTGGCCGAGATGC
GGCCACCAGTGCTGAGGGATCCGATATTAACCAACAGGATTTCGTTCTTC
TGCAGCTTCTCAACGCGCGCTCCCTTCTTGTCACCATCGGTACGGACGCC
GAGAAGGCGACGCAGCAGGTAATACGAGATTTCCAGCTCCTGGTAGATGT
CCGGCAGCTGGCCAACGGCGCCTAGCACCTGACCGACCAAACGATCGGCA
CGGCACAGCGTAGGATCGATCTTGGTGCCCACACCAATCAGACCGCCGGG
CACGGCGTACTGCAGCTCATTCTGTTCGGCGAAGAGCGAGACGATACGGG
AGAAGATTGGACGGCAGGTGATGTTGCCATCGCTATCCTTGGTCACAACG
CCCGGACGCACCTCGATCTCTTGGCCTACCTTCAGCACGCCGCTCAGAAT
GGAGCCACCGGCCACACCGCCCTTAAGGTCTGCCACCTCACAGCCTGGCT
TGTTCACGTCGAAGGATCGGATGACGATCAGACGGGGCGGGGCATTGAAG
TCACGCGGCGGCACTGGTATCTTGTTCACAATGTACTCGCAGAGCACATC
GATGTTGTACTTAAGCTGGGCCGAGATCGGAATGATCGGAGCGCCCTCAG
CTACGGTGCCCTGGACGAATTTGGTGATCTCCTCGTACTGCTCTTTCGCC
TGGCTCTCCTTGATCAGATCGATCTTGTTTTGCAAGATCAGAATCTGTTT
CAG
BO05408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6476-PB | 1428 | Su(var)3-9-RB | 541..1425 | 903..19 | 4425 | 100 | Minus |
CG6476-PC | 1404 | Su(var)3-9-RC | 517..1401 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 2062 | CG43665-RD | 652..1536 | 903..19 | 4425 | 100 | Minus |
eIF-2gamma-RC | 1886 | CG43665-RC | 616..1500 | 903..19 | 4425 | 100 | Minus |
eIF-2gamma-RB | 1922 | CG43665-RB | 652..1536 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15258510..15259321 | 92..903 | 4060 | 100 | Plus |
3R | 32079331 | 3R | 15258370..15258443 | 19..92 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:49:39 has no hits.
BO05408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:14 Download gff for
BO05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PB | 541..1428 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:34 Download gff for
BO05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PC | 517..1404 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:41 Download gff for
BO05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 652..1536 | 19..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:21 Download gff for
BO05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 652..1536 | 19..903 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:21 Download gff for
BO05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15258370..15258442 | 19..91 | 100 | <- | Plus |
3R | 15258510..15259321 | 92..903 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:41 Download gff for
BO05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084092..11084164 | 19..91 | 100 | <- | Plus |
arm_3R | 11084232..11085043 | 92..903 | 100 | | Plus |
BO05408.5prime Sequence
938 bp (821 high quality bases) assembled on 2005-11-29
> BO05408.5prime
GAAGTTATCAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACA
GGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACG
CCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCAC
CATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCG
GCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATC
AAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTG
CCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCT
TGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACAT
GTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTT
GAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATG
AATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATT
ATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAA
GGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGG
GCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAG
TACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCC
GCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCG
ACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCC
GGTGGCTCCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGAGATCGAGGT
GCGTCCGGGCGTTGTGACCAAGGATAGCGATGGCCACA
BO05408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6476-PB | 1428 | Su(var)3-9-RB | 1..918 | 17..934 | 4590 | 100 | Plus |
CG6476-PC | 1404 | Su(var)3-9-RC | 42..894 | 82..934 | 4265 | 100 | Plus |
CG6476-PA | 1908 | Su(var)3-9-RA | 1..241 | 17..257 | 1205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 2062 | CG43665-RD | 110..1033 | 15..938 | 4605 | 99.9 | Plus |
eIF-2gamma-RB | 1922 | CG43665-RB | 110..1033 | 15..938 | 4605 | 99.9 | Plus |
eIF-2gamma-RC | 1886 | CG43665-RC | 141..997 | 82..938 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15258940..15259388 | 938..490 | 2215 | 99.6 | Minus |
3R | 32079331 | 3R | 15259449..15259687 | 495..257 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 15262545..15262722 | 259..82 | 890 | 100 | Minus |
3R | 32079331 | 3R | 15263281..15263349 | 83..15 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:54:55 has no hits.
BO05408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:16 Download gff for
BO05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PB | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:35 Download gff for
BO05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PB | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:08 Download gff for
BO05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 97..1032 | 1..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:26 Download gff for
BO05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 97..1032 | 1..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:26 Download gff for
BO05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15258941..15259383 | 495..937 | 99 | <- | Minus |
3R | 15259450..15259686 | 258..494 | 100 | <- | Minus |
3R | 15262547..15262721 | 83..257 | 100 | <- | Minus |
3R | 15263282..15263362 | 1..82 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:08 Download gff for
BO05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084663..11085105 | 495..937 | 99 | <- | Minus |
arm_3R | 11085172..11085408 | 258..494 | 100 | <- | Minus |
arm_3R | 11088269..11088443 | 83..257 | 100 | <- | Minus |
arm_3R | 11089004..11089084 | 1..82 | 93 | | Minus |
BO05408.complete Sequence
1459 bp (1459 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630018
> BO05408.complete
GAAGTTATCAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACA
GGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACG
CCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCAC
CATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCG
GCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATC
AAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTG
CCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCT
TGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACAT
GTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTT
GAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATG
AATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATT
ATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAA
GGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGG
GCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAG
TACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCC
GCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCG
ACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCC
GGTGGCTCCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGAGATCGAGGT
GCGTCCGGGCGTTGTGACCAAGGATAGCGATGGCAACATCACCTGCCGTC
CAATCTTCTCCCGTATCGTCTCGCTCTTCGCCGAACAGAATGAGCTGCAG
TACGCCGTGCCCGGCGGTCTGATTGGTGTGGGCACCAAGATCGATCCTAC
GCTGTGCCGTGCCGATCGTTTGGTCGGTCAGGTGCTAGGCGCCGTTGGCC
AGCTGCCGGACATCTACCAGGAGCTGGAAATCTCGTATTACCTGCTGCGT
CGCCTTCTCGGCGTCCGTACCGATGGTGACAAGAAGGGAGCGCGCGTTGA
GAAGCTGCAGAAGAACGAAATCCTGTTGGTTAATATCGGATCCCTCAGCA
CTGGTGGCCGCATCTCGGCCACCAAAGGTGATTTGGCCAAGATCGTTCTT
ACGACGCCTGTGTGCACGGAGAAGGGCGAGAAGATTGCACTCAGCAGACG
TGTGGAGAACCATTGGCGTTTGATTGGCTGGGGTCAGATCTTCGGAGGCA
AGACAATCACACCCGTTCTGGACAGCCAGGTGGCAAAGAAGGCAAGCTTT
CTAGACCAT
BO05408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 1428 | CG43665-PD | 1..1425 | 17..1441 | 7125 | 100 | Plus |
eIF-2gamma-RB | 1428 | CG43665-PB | 1..1425 | 17..1441 | 7125 | 100 | Plus |
eIF-2gamma-RC | 1404 | CG43665-PC | 42..1401 | 82..1441 | 6800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 2062 | CG43665-RD | 110..1536 | 15..1441 | 7135 | 100 | Plus |
eIF-2gamma-RB | 1922 | CG43665-RB | 110..1536 | 15..1441 | 7135 | 100 | Plus |
eIF-2gamma-RC | 1886 | CG43665-RC | 141..1500 | 82..1441 | 6800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15258510..15259388 | 1368..490 | 4380 | 99.9 | Minus |
3R | 32079331 | 3R | 15259449..15259687 | 495..257 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 15262545..15262722 | 259..82 | 890 | 100 | Minus |
3R | 32079331 | 3R | 15258370..15258443 | 1441..1368 | 370 | 100 | Minus |
3R | 32079331 | 3R | 15263281..15263349 | 83..15 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:20:10 has no hits.
BO05408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:13 Download gff for
BO05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RB | 1..1428 | 17..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:38 Download gff for
BO05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RB | 113..1552 | 1..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:40 Download gff for
BO05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 112..1536 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:13 Download gff for
BO05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RB | 113..1552 | 1..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:10 Download gff for
BO05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 112..1536 | 17..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:10 Download gff for
BO05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15258368..15258442 | 1369..1443 | 97 | <- | Minus |
3R | 15258510..15259383 | 495..1368 | 100 | <- | Minus |
3R | 15259450..15259686 | 258..494 | 100 | <- | Minus |
3R | 15262547..15262721 | 83..257 | 100 | <- | Minus |
3R | 15263282..15263347 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:40 Download gff for
BO05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084090..11084164 | 1369..1443 | 97 | <- | Minus |
arm_3R | 11084232..11085105 | 495..1368 | 100 | <- | Minus |
arm_3R | 11085172..11085408 | 258..494 | 100 | <- | Minus |
arm_3R | 11088269..11088443 | 83..257 | 100 | <- | Minus |
arm_3R | 11089004..11089069 | 17..82 | 100 | | Minus |
BO05408.pep Sequence
Translation from 16 to 1459
> BO05408.pep
MATAEAQIGVNRNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVA
HGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPAS
FVSDASSKDDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAV
MDAALLLIAGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAK
EQYEEITKFVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFN
APPRLIVIRSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVV
TKDSDGNITCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRAD
RLVGQVLGAVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKN
EILLVNIGSLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHW
RLIGWGQIFGGKTITPVLDSQVAKKASFLDH
BO05408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-PD | 475 | CG43665-PD | 1..475 | 1..475 | 2416 | 100 | Plus |
eIF-2gamma-PB | 475 | CG43665-PB | 1..475 | 1..475 | 2416 | 100 | Plus |
eIF-2gamma-PC | 467 | CG43665-PC | 15..467 | 23..475 | 2310 | 100 | Plus |
Su(var)3-9-PA | 635 | CG43664-PA | 1..89 | 1..89 | 390 | 92.1 | Plus |
EfSec-PA | 511 | CG9841-PA | 6..230 | 42..295 | 201 | 27.8 | Plus |