Clone BO05408 Report

Search the DGRC for BO05408

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptSu(var)3-9-RB
Protein status:BO05408.pep: validated full length
Sequenced Size:1459

Clone Sequence Records

BO05408.3prime Sequence

903 bp (806 high quality bases) assembled on 2005-12-02

> BO05408.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTGCCACCTGGCTGTCCAGAACGGGTG
TGATTGTCTTGCCTCCGAAGATCTGACCCCAGCCAATCAAACGCCAATGG
TTCTCCACACGTCTGCTGAGTGCAATCTTCTCGCCCTTCTCCGTGCACAC
AGGCGTCGTAAGAACGATCTTGGCCAAATCACCTTTGGTGGCCGAGATGC
GGCCACCAGTGCTGAGGGATCCGATATTAACCAACAGGATTTCGTTCTTC
TGCAGCTTCTCAACGCGCGCTCCCTTCTTGTCACCATCGGTACGGACGCC
GAGAAGGCGACGCAGCAGGTAATACGAGATTTCCAGCTCCTGGTAGATGT
CCGGCAGCTGGCCAACGGCGCCTAGCACCTGACCGACCAAACGATCGGCA
CGGCACAGCGTAGGATCGATCTTGGTGCCCACACCAATCAGACCGCCGGG
CACGGCGTACTGCAGCTCATTCTGTTCGGCGAAGAGCGAGACGATACGGG
AGAAGATTGGACGGCAGGTGATGTTGCCATCGCTATCCTTGGTCACAACG
CCCGGACGCACCTCGATCTCTTGGCCTACCTTCAGCACGCCGCTCAGAAT
GGAGCCACCGGCCACACCGCCCTTAAGGTCTGCCACCTCACAGCCTGGCT
TGTTCACGTCGAAGGATCGGATGACGATCAGACGGGGCGGGGCATTGAAG
TCACGCGGCGGCACTGGTATCTTGTTCACAATGTACTCGCAGAGCACATC
GATGTTGTACTTAAGCTGGGCCGAGATCGGAATGATCGGAGCGCCCTCAG
CTACGGTGCCCTGGACGAATTTGGTGATCTCCTCGTACTGCTCTTTCGCC
TGGCTCTCCTTGATCAGATCGATCTTGTTTTGCAAGATCAGAATCTGTTT
CAG

BO05408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6476-PB 1428 Su(var)3-9-RB 541..1425 903..19 4425 100 Minus
CG6476-PC 1404 Su(var)3-9-RC 517..1401 903..19 4425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 2062 CG43665-RD 652..1536 903..19 4425 100 Minus
eIF-2gamma-RC 1886 CG43665-RC 616..1500 903..19 4425 100 Minus
eIF-2gamma-RB 1922 CG43665-RB 652..1536 903..19 4425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259321 92..903 4060 100 Plus
3R 32079331 3R 15258370..15258443 19..92 370 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:49:39 has no hits.

BO05408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:14 Download gff for BO05408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PB 541..1428 18..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:34 Download gff for BO05408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PC 517..1404 18..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:41 Download gff for BO05408.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 652..1536 19..903 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:21 Download gff for BO05408.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 652..1536 19..903 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:21 Download gff for BO05408.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15258370..15258442 19..91 100 <- Plus
3R 15258510..15259321 92..903 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:41 Download gff for BO05408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084092..11084164 19..91 100 <- Plus
arm_3R 11084232..11085043 92..903 100   Plus

BO05408.5prime Sequence

938 bp (821 high quality bases) assembled on 2005-11-29

> BO05408.5prime
GAAGTTATCAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACA
GGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACG
CCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCAC
CATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCG
GCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATC
AAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTG
CCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCT
TGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACAT
GTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTT
GAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATG
AATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATT
ATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAA
GGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGG
GCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAG
TACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCC
GCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCG
ACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCC
GGTGGCTCCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGAGATCGAGGT
GCGTCCGGGCGTTGTGACCAAGGATAGCGATGGCCACA

BO05408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6476-PB 1428 Su(var)3-9-RB 1..918 17..934 4590 100 Plus
CG6476-PC 1404 Su(var)3-9-RC 42..894 82..934 4265 100 Plus
CG6476-PA 1908 Su(var)3-9-RA 1..241 17..257 1205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 2062 CG43665-RD 110..1033 15..938 4605 99.9 Plus
eIF-2gamma-RB 1922 CG43665-RB 110..1033 15..938 4605 99.9 Plus
eIF-2gamma-RC 1886 CG43665-RC 141..997 82..938 4270 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258940..15259388 938..490 2215 99.6 Minus
3R 32079331 3R 15259449..15259687 495..257 1195 100 Minus
3R 32079331 3R 15262545..15262722 259..82 890 100 Minus
3R 32079331 3R 15263281..15263349 83..15 345 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:54:55 has no hits.

BO05408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:16 Download gff for BO05408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PB 1..921 17..937 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:35 Download gff for BO05408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PB 1..921 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:08 Download gff for BO05408.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 97..1032 1..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:26 Download gff for BO05408.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 97..1032 1..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:26 Download gff for BO05408.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15258941..15259383 495..937 99 <- Minus
3R 15259450..15259686 258..494 100 <- Minus
3R 15262547..15262721 83..257 100 <- Minus
3R 15263282..15263362 1..82 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:08 Download gff for BO05408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084663..11085105 495..937 99 <- Minus
arm_3R 11085172..11085408 258..494 100 <- Minus
arm_3R 11088269..11088443 83..257 100 <- Minus
arm_3R 11089004..11089084 1..82 93   Minus

BO05408.complete Sequence

1459 bp (1459 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630018

> BO05408.complete
GAAGTTATCAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACA
GGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACG
CCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCAC
CATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCG
GCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATC
AAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTG
CCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCT
TGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACAT
GTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTT
GAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATG
AATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATT
ATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAA
GGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGG
GCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAG
TACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCC
GCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCG
ACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCC
GGTGGCTCCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGAGATCGAGGT
GCGTCCGGGCGTTGTGACCAAGGATAGCGATGGCAACATCACCTGCCGTC
CAATCTTCTCCCGTATCGTCTCGCTCTTCGCCGAACAGAATGAGCTGCAG
TACGCCGTGCCCGGCGGTCTGATTGGTGTGGGCACCAAGATCGATCCTAC
GCTGTGCCGTGCCGATCGTTTGGTCGGTCAGGTGCTAGGCGCCGTTGGCC
AGCTGCCGGACATCTACCAGGAGCTGGAAATCTCGTATTACCTGCTGCGT
CGCCTTCTCGGCGTCCGTACCGATGGTGACAAGAAGGGAGCGCGCGTTGA
GAAGCTGCAGAAGAACGAAATCCTGTTGGTTAATATCGGATCCCTCAGCA
CTGGTGGCCGCATCTCGGCCACCAAAGGTGATTTGGCCAAGATCGTTCTT
ACGACGCCTGTGTGCACGGAGAAGGGCGAGAAGATTGCACTCAGCAGACG
TGTGGAGAACCATTGGCGTTTGATTGGCTGGGGTCAGATCTTCGGAGGCA
AGACAATCACACCCGTTCTGGACAGCCAGGTGGCAAAGAAGGCAAGCTTT
CTAGACCAT

BO05408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 1428 CG43665-PD 1..1425 17..1441 7125 100 Plus
eIF-2gamma-RB 1428 CG43665-PB 1..1425 17..1441 7125 100 Plus
eIF-2gamma-RC 1404 CG43665-PC 42..1401 82..1441 6800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 2062 CG43665-RD 110..1536 15..1441 7135 100 Plus
eIF-2gamma-RB 1922 CG43665-RB 110..1536 15..1441 7135 100 Plus
eIF-2gamma-RC 1886 CG43665-RC 141..1500 82..1441 6800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259388 1368..490 4380 99.9 Minus
3R 32079331 3R 15259449..15259687 495..257 1195 100 Minus
3R 32079331 3R 15262545..15262722 259..82 890 100 Minus
3R 32079331 3R 15258370..15258443 1441..1368 370 100 Minus
3R 32079331 3R 15263281..15263349 83..15 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:20:10 has no hits.

BO05408.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:13 Download gff for BO05408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 1..1428 17..1442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:38 Download gff for BO05408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 113..1552 1..1441 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:40 Download gff for BO05408.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 112..1536 17..1443 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:13 Download gff for BO05408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 113..1552 1..1441 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:10 Download gff for BO05408.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 112..1536 17..1443 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:10 Download gff for BO05408.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15258368..15258442 1369..1443 97 <- Minus
3R 15258510..15259383 495..1368 100 <- Minus
3R 15259450..15259686 258..494 100 <- Minus
3R 15262547..15262721 83..257 100 <- Minus
3R 15263282..15263347 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:40 Download gff for BO05408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084090..11084164 1369..1443 97 <- Minus
arm_3R 11084232..11085105 495..1368 100 <- Minus
arm_3R 11085172..11085408 258..494 100 <- Minus
arm_3R 11088269..11088443 83..257 100 <- Minus
arm_3R 11089004..11089069 17..82 100   Minus

BO05408.pep Sequence

Translation from 16 to 1459

> BO05408.pep
MATAEAQIGVNRNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVA
HGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPAS
FVSDASSKDDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAV
MDAALLLIAGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAK
EQYEEITKFVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFN
APPRLIVIRSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVV
TKDSDGNITCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRAD
RLVGQVLGAVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKN
EILLVNIGSLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHW
RLIGWGQIFGGKTITPVLDSQVAKKASFLDH

BO05408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-PD 475 CG43665-PD 1..475 1..475 2416 100 Plus
eIF-2gamma-PB 475 CG43665-PB 1..475 1..475 2416 100 Plus
eIF-2gamma-PC 467 CG43665-PC 15..467 23..475 2310 100 Plus
Su(var)3-9-PA 635 CG43664-PA 1..89 1..89 390 92.1 Plus
EfSec-PA 511 CG9841-PA 6..230 42..295 201 27.8 Plus