Clone BO05409 Report

Search the DGRC for BO05409

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptVhaAC45-RA
Protein status:BO05409.pep: validated full length
Sequenced Size:1171

Clone Sequence Records

BO05409.3prime Sequence

940 bp (850 high quality bases) assembled on 2005-12-02

> BO05409.3prime
ATGGTCTAGAAAGCTTGCCTCGGCGGCGGCATTGATGGTGATAGTCTTGC
CCTTGGGATCGTCGAAGCGGTCCATCGTGTTGATGTCCATCATCCAGCAG
ACGCCGACGAACATGATGACCAGCAGTAGGGCGACCACAAACAGTCCCAT
CAGGATACCGGGCGTCACGAAGCCCACACAGTCCCAGGAGTCGCCGAAGG
GAAAGTCCTCCTTGTACGTACCATCGAAGGGAGCCTGCAGCTGCAGGGAC
TTGAAGCTCAGGGTGTTGTACATGTTGTTGACGGCCGCGGACTCGAGGGT
GAGGTTGCCGCACGAGTAAGAGAACGTGGTTGGGGCATTCACGCCGCTGG
AGCGGAAGTTGTTGTTGTCGTAGACCAAATTGCTCAGACTAAAGTATCCG
CCATTATAAACAACGTCAAAGGTGATTGGCTTGTCGGCGACAGATGTGTC
CATAACAACGGATAGCTTGGTAGAGCTAGAGTTGGTGAGCTTGAGGTCGG
TGACGGTGATGGGGTTGCCGTTGTAGAGCAGGGCAGTGTAGAAGATCTGA
AACTGATTGGTCGACTTCCACATGATGCCACCGGTTGTGGCGGCGGTGTC
ACGGCGGGTACGACGCTGCACCACAGGAGCCGTGGAGGGGGCGGCCAGGT
ACAGATAAGCCACCTTGCACTCGAACTGCTTGCTGATAGCAGCTATGGCG
GCGTCATGTGACTCCAGACTGGCCTCCCGGCTCTCGGCGGCGTCCTCGAA
GGTCACAAACAGGGCCGTACCTACGGCACACTTGGCCGGCGTGGTCAGCT
TTCCACTGGCATCGATGGAGTTGTGCTCGCGCTTGGCGGCCACTGAGCGC
AGTGCCTCCGAGGGGTTCTCCACGCTGGTGTAGTAGGTCTTGGGGCTCAC
TCCCTGCAGCTGGGCGTAGCAGGACTGCGCCTGGGAGTTG

BO05409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8029-PB 1140 CG8029-RB 216..1137 940..19 4610 100 Minus
CG8029-PA 1140 CG8029-RA 216..1137 940..19 4610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-RA 1894 CG8029-RA 420..1341 940..19 4610 100 Minus
VhaAC45-RB 1925 CG8029-RB 332..1253 940..19 4610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9208416..9209102 705..19 3435 100 Minus
2R 25286936 2R 9208109..9208344 940..705 1180 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:17:02 has no hits.

BO05409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:16 Download gff for BO05409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8029-PB 216..1140 15..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:36 Download gff for BO05409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8029-PA 216..1140 15..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:25 Download gff for BO05409.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 332..1256 15..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:05 Download gff for BO05409.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 332..1256 15..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:05 Download gff for BO05409.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9208109..9208344 705..940 100 -> Minus
2R 9208417..9209105 15..704 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:25 Download gff for BO05409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5095614..5095849 705..940 100 -> Minus
arm_2R 5095922..5096610 15..704 99   Minus

BO05409.5prime Sequence

957 bp (804 high quality bases) assembled on 2005-12-02

> BO05409.5prime
GAAGTTATCAGTCGACATGTTGTGGAAATCGCTGATTGCGTTGTGCGTCA
TTGGGGCTGCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGGGAGCCAAC
AGTGTGGCGAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAGTTTGCCGA
GCAGTTGGCTGCATTGCTGGAAGATCACATGGTCGTGGCCTTCGAGGAAA
ATGGCCTGAGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGGCGCAGTCC
TGCTACGCCCAGCTGCAGGGAGTGAGCCCCAAGACCTACTACACCAGCGT
GGAGAACCCCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCGCGAGCACA
ACTCCATCGATGCCAGTGGAAAGCTGACCACGCCGGCCAAGTGTGCCGTA
GGTACGGCCCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGCCGGGAGGC
CAGTCTGGAGTCACATGACGCCGCCATAGCTGCTATCAGCAAGCAGTTCG
AGTGCAAGGTGGCTTATCTGTACCTGGCCGCCCCCTCCACGGCTCCTGTG
GTGCAGCGTCGTACCCGCCGTGACACCGCCGCCACAACCGGTGGCATCAT
GTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACA
ACGGCAACCCCATCACCGTCACCGACCTCAAGCTCACCAACTCTAGCTCT
ACCAAGCTATCCGTTGTTATGGACACATCTGTCGCCGACAAGCCAATCAC
CTTTGACGTTGTTTATAATGGCGGATACTTTAGTCTGAGCAATTTGGTCT
ACGACAACAACAACTTCCGCTCCAGCGGCGTGAATGCCCCCACCACGTTC
TCTTACTCGTGCGGCAACCTCACCCTCGAGTCCGCGGCCGTCAACAACAT
GTACAACACCCTGAGCTTCAAGTCCCTGCAGCTGCCGGCTCCCTTCCATG
GTACGTA

BO05409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8029-PB 1140 CG8029-RB 1..941 17..957 4630 99.6 Plus
CG8029-PA 1140 CG8029-RA 1..941 17..957 4630 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-RA 1894 CG8029-RA 205..1145 17..957 4660 99.7 Plus
VhaAC45-RB 1925 CG8029-RB 117..1057 17..957 4660 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9208416..9208906 467..957 2410 99.4 Plus
2R 25286936 2R 9208083..9208344 206..467 1310 100 Plus
2R 25286936 2R 9207910..9208016 99..205 535 100 Plus
2R 25286936 2R 9207765..9207850 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:18:29 has no hits.

BO05409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:17 Download gff for BO05409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8029-PB 1..940 17..956 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:38 Download gff for BO05409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8029-PA 1..940 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:50 Download gff for BO05409.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 110..1056 9..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:24 Download gff for BO05409.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 110..1056 9..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:24 Download gff for BO05409.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9207914..9208016 103..205 100 -> Plus
2R 9208083..9208344 206..467 100 -> Plus
2R 9207758..9207850 9..102 96 -> Plus
2R 9208417..9208905 468..956 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:50 Download gff for BO05409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5095263..5095355 9..102 96 -> Plus
arm_2R 5095419..5095521 103..205 100 -> Plus
arm_2R 5095588..5095849 206..467 100 -> Plus
arm_2R 5095922..5096410 468..956 99   Plus

BO05409.complete Sequence

1171 bp (1171 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630019

> BO05409.complete
GAAGTTATCAGTCGACATGTTGTGGAAATCGCTGATTGCGTTGTGCGTCA
TTGGGGCTGCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGGGAGCCAAC
AGTGTGGCGAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAGTTTGCCGA
GCAGTTGGCTGCATTGCTGGAAGATCACATGGTCGTGGCCTTCGAGGAAA
ATGGCCTGAGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGGCGCAGTCC
TGCTACGCCCAGCTGCAGGGAGTGAGCCCCAAGACCTACTACACCAGCGT
GGAGAACCCCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCGCGAGCACA
ACTCCATCGATGCCAGTGGAAAGCTGACCACGCCGGCCAAGTGTGCCGTA
GGTACGGCCCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGCCGGGAGGC
CAGTCTGGAGTCACATGACGCCGCCATAGCTGCTATCAGCAAGCAGTTCG
AGTGCAAGGTGGCTTATCTGTACCTGGCCGCCCCCTCCACGGCTCCTGTG
GTGCAGCGTCGTACCCGCCGTGACACCGCCGCCACAACCGGTGGCATCAT
GTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACA
ACGGCAACCCCATCACCGTCACCGACCTCAAGCTCACCAACTCTAGCTCT
ACCAAGCTATCCGTTGTTATGGACACATCTGTCGCCGACAAGCCAATCAC
CTTTGACGTTGTTTATAATGGCGGATACTTTAGTCTGAGCAATTTGGTCT
ACGACAACAACAACTTCCGCTCCAGCGGCGTGAATGCCCCAACCACGTTC
TCTTACTCGTGCGGCAACCTCACCCTCGAGTCCGCGGCCGTCAACAACAT
GTACAACACCCTGAGCTTCAAGTCCCTGCAGCTGCAGGCTCCCTTCGATG
GTACGTACAAGGAGGACTTTCCCTTCGGCGACTCCTGGGACTGTGTGGGC
TTCGTGACGCCCGGTATCCTGATGGGACTGTTTGTGGTCGCCCTACTGCT
GGTCATCATGTTCGTCGGCGTCTGCTGGATGATGGACATCAACACGATGG
ACCGCTTCGACGATCCCAAGGGCAAGACTATCACCATCAATGCCGCCGCC
GAGGCAAGCTTTCTAGACCAT

BO05409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-RA 1140 CG8029-PA 1..1137 17..1153 5685 100 Plus
VhaAC45-RB 1140 CG8029-PB 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-RA 1894 CG8029-RA 205..1341 17..1153 5685 100 Plus
VhaAC45-RB 1925 CG8029-RB 117..1253 17..1153 5685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9208416..9209102 467..1153 3435 100 Plus
2R 25286936 2R 9208083..9208344 206..467 1310 100 Plus
2R 25286936 2R 9207910..9208016 99..205 535 100 Plus
2R 25286936 2R 9207765..9207850 17..102 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:40:38 has no hits.

BO05409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:14 Download gff for BO05409.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 1..1140 17..1157 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:40 Download gff for BO05409.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 196..1342 9..1157 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:02 Download gff for BO05409.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 122..1253 22..1155 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:14 Download gff for BO05409.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 196..1342 9..1157 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:37 Download gff for BO05409.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 122..1253 22..1155 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:37 Download gff for BO05409.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9207770..9207850 22..102 100 -> Plus
2R 9207914..9208016 103..205 100 -> Plus
2R 9208083..9208344 206..467 100 -> Plus
2R 9208417..9209102 468..1155 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:02 Download gff for BO05409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5095275..5095355 22..102 100 -> Plus
arm_2R 5095419..5095521 103..205 100 -> Plus
arm_2R 5095588..5095849 206..467 100 -> Plus
arm_2R 5095922..5096607 468..1155 99   Plus

BO05409.pep Sequence

Translation from 16 to 1171

> BO05409.pep
MLWKSLIALCVIGAAVAEQTPVFLWGANSVAKPSLKTVSQVEFAEQLAAL
LEDHMVVAFEENGLSSKDFLCSNSQAQSCYAQLQGVSPKTYYTSVENPSE
ALRSVAAKREHNSIDASGKLTTPAKCAVGTALFVTFEDAAESREASLESH
DAAIAAISKQFECKVAYLYLAAPSTAPVVQRRTRRDTAATTGGIMWKSTN
QFQIFYTALLYNGNPITVTDLKLTNSSSTKLSVVMDTSVADKPITFDVVY
NGGYFSLSNLVYDNNNFRSSGVNAPTTFSYSCGNLTLESAAVNNMYNTLS
FKSLQLQAPFDGTYKEDFPFGDSWDCVGFVTPGILMGLFVVALLLVIMFV
GVCWMMDINTMDRFDDPKGKTITINAAAEASFLDH

BO05409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-PA 379 CG8029-PA 1..379 1..379 1943 100 Plus
VhaAC45-PB 379 CG8029-PB 1..379 1..379 1943 100 Plus
CG5421-PB 426 CG5421-PB 10..418 6..367 183 21.5 Plus
CG5421-PA 426 CG5421-PA 10..418 6..367 183 21.5 Plus
CG31030-PA 384 CG31030-PA 281..379 273..373 153 35 Plus