Clone Sequence Records
BO05409.3prime Sequence
940 bp (850 high quality bases) assembled on 2005-12-02
> BO05409.3prime
ATGGTCTAGAAAGCTTGCCTCGGCGGCGGCATTGATGGTGATAGTCTTGC
CCTTGGGATCGTCGAAGCGGTCCATCGTGTTGATGTCCATCATCCAGCAG
ACGCCGACGAACATGATGACCAGCAGTAGGGCGACCACAAACAGTCCCAT
CAGGATACCGGGCGTCACGAAGCCCACACAGTCCCAGGAGTCGCCGAAGG
GAAAGTCCTCCTTGTACGTACCATCGAAGGGAGCCTGCAGCTGCAGGGAC
TTGAAGCTCAGGGTGTTGTACATGTTGTTGACGGCCGCGGACTCGAGGGT
GAGGTTGCCGCACGAGTAAGAGAACGTGGTTGGGGCATTCACGCCGCTGG
AGCGGAAGTTGTTGTTGTCGTAGACCAAATTGCTCAGACTAAAGTATCCG
CCATTATAAACAACGTCAAAGGTGATTGGCTTGTCGGCGACAGATGTGTC
CATAACAACGGATAGCTTGGTAGAGCTAGAGTTGGTGAGCTTGAGGTCGG
TGACGGTGATGGGGTTGCCGTTGTAGAGCAGGGCAGTGTAGAAGATCTGA
AACTGATTGGTCGACTTCCACATGATGCCACCGGTTGTGGCGGCGGTGTC
ACGGCGGGTACGACGCTGCACCACAGGAGCCGTGGAGGGGGCGGCCAGGT
ACAGATAAGCCACCTTGCACTCGAACTGCTTGCTGATAGCAGCTATGGCG
GCGTCATGTGACTCCAGACTGGCCTCCCGGCTCTCGGCGGCGTCCTCGAA
GGTCACAAACAGGGCCGTACCTACGGCACACTTGGCCGGCGTGGTCAGCT
TTCCACTGGCATCGATGGAGTTGTGCTCGCGCTTGGCGGCCACTGAGCGC
AGTGCCTCCGAGGGGTTCTCCACGCTGGTGTAGTAGGTCTTGGGGCTCAC
TCCCTGCAGCTGGGCGTAGCAGGACTGCGCCTGGGAGTTG
BO05409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8029-PB | 1140 | CG8029-RB | 216..1137 | 940..19 | 4610 | 100 | Minus |
CG8029-PA | 1140 | CG8029-RA | 216..1137 | 940..19 | 4610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-RA | 1894 | CG8029-RA | 420..1341 | 940..19 | 4610 | 100 | Minus |
VhaAC45-RB | 1925 | CG8029-RB | 332..1253 | 940..19 | 4610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9208416..9209102 | 705..19 | 3435 | 100 | Minus |
2R | 25286936 | 2R | 9208109..9208344 | 940..705 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:17:02 has no hits.
BO05409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:16 Download gff for
BO05409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-PB | 216..1140 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:36 Download gff for
BO05409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-PA | 216..1140 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:25 Download gff for
BO05409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 332..1256 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:05 Download gff for
BO05409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 332..1256 | 15..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:05 Download gff for
BO05409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9208109..9208344 | 705..940 | 100 | -> | Minus |
2R | 9208417..9209105 | 15..704 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:25 Download gff for
BO05409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5095614..5095849 | 705..940 | 100 | -> | Minus |
arm_2R | 5095922..5096610 | 15..704 | 99 | | Minus |
BO05409.5prime Sequence
957 bp (804 high quality bases) assembled on 2005-12-02
> BO05409.5prime
GAAGTTATCAGTCGACATGTTGTGGAAATCGCTGATTGCGTTGTGCGTCA
TTGGGGCTGCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGGGAGCCAAC
AGTGTGGCGAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAGTTTGCCGA
GCAGTTGGCTGCATTGCTGGAAGATCACATGGTCGTGGCCTTCGAGGAAA
ATGGCCTGAGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGGCGCAGTCC
TGCTACGCCCAGCTGCAGGGAGTGAGCCCCAAGACCTACTACACCAGCGT
GGAGAACCCCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCGCGAGCACA
ACTCCATCGATGCCAGTGGAAAGCTGACCACGCCGGCCAAGTGTGCCGTA
GGTACGGCCCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGCCGGGAGGC
CAGTCTGGAGTCACATGACGCCGCCATAGCTGCTATCAGCAAGCAGTTCG
AGTGCAAGGTGGCTTATCTGTACCTGGCCGCCCCCTCCACGGCTCCTGTG
GTGCAGCGTCGTACCCGCCGTGACACCGCCGCCACAACCGGTGGCATCAT
GTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACA
ACGGCAACCCCATCACCGTCACCGACCTCAAGCTCACCAACTCTAGCTCT
ACCAAGCTATCCGTTGTTATGGACACATCTGTCGCCGACAAGCCAATCAC
CTTTGACGTTGTTTATAATGGCGGATACTTTAGTCTGAGCAATTTGGTCT
ACGACAACAACAACTTCCGCTCCAGCGGCGTGAATGCCCCCACCACGTTC
TCTTACTCGTGCGGCAACCTCACCCTCGAGTCCGCGGCCGTCAACAACAT
GTACAACACCCTGAGCTTCAAGTCCCTGCAGCTGCCGGCTCCCTTCCATG
GTACGTA
BO05409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8029-PB | 1140 | CG8029-RB | 1..941 | 17..957 | 4630 | 99.6 | Plus |
CG8029-PA | 1140 | CG8029-RA | 1..941 | 17..957 | 4630 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-RA | 1894 | CG8029-RA | 205..1145 | 17..957 | 4660 | 99.7 | Plus |
VhaAC45-RB | 1925 | CG8029-RB | 117..1057 | 17..957 | 4660 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9208416..9208906 | 467..957 | 2410 | 99.4 | Plus |
2R | 25286936 | 2R | 9208083..9208344 | 206..467 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 9207910..9208016 | 99..205 | 535 | 100 | Plus |
2R | 25286936 | 2R | 9207765..9207850 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:18:29 has no hits.
BO05409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:17 Download gff for
BO05409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-PB | 1..940 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:38 Download gff for
BO05409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-PA | 1..940 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:50 Download gff for
BO05409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 110..1056 | 9..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:24 Download gff for
BO05409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 110..1056 | 9..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:24 Download gff for
BO05409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9207914..9208016 | 103..205 | 100 | -> | Plus |
2R | 9208083..9208344 | 206..467 | 100 | -> | Plus |
2R | 9207758..9207850 | 9..102 | 96 | -> | Plus |
2R | 9208417..9208905 | 468..956 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:50 Download gff for
BO05409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5095263..5095355 | 9..102 | 96 | -> | Plus |
arm_2R | 5095419..5095521 | 103..205 | 100 | -> | Plus |
arm_2R | 5095588..5095849 | 206..467 | 100 | -> | Plus |
arm_2R | 5095922..5096410 | 468..956 | 99 | | Plus |
BO05409.complete Sequence
1171 bp (1171 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630019
> BO05409.complete
GAAGTTATCAGTCGACATGTTGTGGAAATCGCTGATTGCGTTGTGCGTCA
TTGGGGCTGCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGGGAGCCAAC
AGTGTGGCGAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAGTTTGCCGA
GCAGTTGGCTGCATTGCTGGAAGATCACATGGTCGTGGCCTTCGAGGAAA
ATGGCCTGAGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGGCGCAGTCC
TGCTACGCCCAGCTGCAGGGAGTGAGCCCCAAGACCTACTACACCAGCGT
GGAGAACCCCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCGCGAGCACA
ACTCCATCGATGCCAGTGGAAAGCTGACCACGCCGGCCAAGTGTGCCGTA
GGTACGGCCCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGCCGGGAGGC
CAGTCTGGAGTCACATGACGCCGCCATAGCTGCTATCAGCAAGCAGTTCG
AGTGCAAGGTGGCTTATCTGTACCTGGCCGCCCCCTCCACGGCTCCTGTG
GTGCAGCGTCGTACCCGCCGTGACACCGCCGCCACAACCGGTGGCATCAT
GTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACA
ACGGCAACCCCATCACCGTCACCGACCTCAAGCTCACCAACTCTAGCTCT
ACCAAGCTATCCGTTGTTATGGACACATCTGTCGCCGACAAGCCAATCAC
CTTTGACGTTGTTTATAATGGCGGATACTTTAGTCTGAGCAATTTGGTCT
ACGACAACAACAACTTCCGCTCCAGCGGCGTGAATGCCCCAACCACGTTC
TCTTACTCGTGCGGCAACCTCACCCTCGAGTCCGCGGCCGTCAACAACAT
GTACAACACCCTGAGCTTCAAGTCCCTGCAGCTGCAGGCTCCCTTCGATG
GTACGTACAAGGAGGACTTTCCCTTCGGCGACTCCTGGGACTGTGTGGGC
TTCGTGACGCCCGGTATCCTGATGGGACTGTTTGTGGTCGCCCTACTGCT
GGTCATCATGTTCGTCGGCGTCTGCTGGATGATGGACATCAACACGATGG
ACCGCTTCGACGATCCCAAGGGCAAGACTATCACCATCAATGCCGCCGCC
GAGGCAAGCTTTCTAGACCAT
BO05409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-RA | 1140 | CG8029-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
VhaAC45-RB | 1140 | CG8029-PB | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-RA | 1894 | CG8029-RA | 205..1341 | 17..1153 | 5685 | 100 | Plus |
VhaAC45-RB | 1925 | CG8029-RB | 117..1253 | 17..1153 | 5685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9208416..9209102 | 467..1153 | 3435 | 100 | Plus |
2R | 25286936 | 2R | 9208083..9208344 | 206..467 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 9207910..9208016 | 99..205 | 535 | 100 | Plus |
2R | 25286936 | 2R | 9207765..9207850 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:40:38 has no hits.
BO05409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:14 Download gff for
BO05409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-RA | 1..1140 | 17..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:40 Download gff for
BO05409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-RA | 196..1342 | 9..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:02 Download gff for
BO05409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 122..1253 | 22..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:14 Download gff for
BO05409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-RA | 196..1342 | 9..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:37 Download gff for
BO05409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 122..1253 | 22..1155 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:37 Download gff for
BO05409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9207770..9207850 | 22..102 | 100 | -> | Plus |
2R | 9207914..9208016 | 103..205 | 100 | -> | Plus |
2R | 9208083..9208344 | 206..467 | 100 | -> | Plus |
2R | 9208417..9209102 | 468..1155 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:02 Download gff for
BO05409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5095275..5095355 | 22..102 | 100 | -> | Plus |
arm_2R | 5095419..5095521 | 103..205 | 100 | -> | Plus |
arm_2R | 5095588..5095849 | 206..467 | 100 | -> | Plus |
arm_2R | 5095922..5096607 | 468..1155 | 99 | | Plus |
BO05409.pep Sequence
Translation from 16 to 1171
> BO05409.pep
MLWKSLIALCVIGAAVAEQTPVFLWGANSVAKPSLKTVSQVEFAEQLAAL
LEDHMVVAFEENGLSSKDFLCSNSQAQSCYAQLQGVSPKTYYTSVENPSE
ALRSVAAKREHNSIDASGKLTTPAKCAVGTALFVTFEDAAESREASLESH
DAAIAAISKQFECKVAYLYLAAPSTAPVVQRRTRRDTAATTGGIMWKSTN
QFQIFYTALLYNGNPITVTDLKLTNSSSTKLSVVMDTSVADKPITFDVVY
NGGYFSLSNLVYDNNNFRSSGVNAPTTFSYSCGNLTLESAAVNNMYNTLS
FKSLQLQAPFDGTYKEDFPFGDSWDCVGFVTPGILMGLFVVALLLVIMFV
GVCWMMDINTMDRFDDPKGKTITINAAAEASFLDH
BO05409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-PA | 379 | CG8029-PA | 1..379 | 1..379 | 1943 | 100 | Plus |
VhaAC45-PB | 379 | CG8029-PB | 1..379 | 1..379 | 1943 | 100 | Plus |
CG5421-PB | 426 | CG5421-PB | 10..418 | 6..367 | 183 | 21.5 | Plus |
CG5421-PA | 426 | CG5421-PA | 10..418 | 6..367 | 183 | 21.5 | Plus |
CG31030-PA | 384 | CG31030-PA | 281..379 | 273..373 | 153 | 35 | Plus |