Clone BO05411 Report

Search the DGRC for BO05411

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG4089-RA
Protein status:BO05411.pep: validated full length
Sequenced Size:1582

Clone Sequence Records

BO05411.3prime Sequence

842 bp (778 high quality bases) assembled on 2005-12-02

> BO05411.3prime
ATGGTCTAGAAAGCTTGCATTGCACCAGACAGCATCAAATTGGCATTTGT
TGTGGAACCAGCGGGTCATCCATGCGTTTTTCTTTGACATGTTTGCAGTT
TCCGCCATAACATCGAATCTCATTGGATCGCGAATGGGCTTAGGGAAAAT
GCGCTTCATGTCCACGCGATGCAGATGCTCCTGATGAGCCTGTTGCAGCA
TCTTGTACTCCGAGCCACTGAGGCATTGCAGGCAAAGATCGCACTCCTCC
TTGTTGCAGGACTTGTCGCAATCGTGTGCAGCGCATTTATTCAAGTCGGT
GGACAGGTTTTTATCGGTTGTGATCATCTCGCTGCTTTCGCCGAGCAATG
CGCCACTTGTTGATGTAAGTGGCCTTATGCCAACCAAATTAAACACGCTG
TATAGAACTTGCTCGTACAACAGCGAGTTGGGCTTGAAATGGGCAGAAGA
AAGATTGGGAGACATGTTGGCCTCCATGAGAAAAACTTTCAGATCCTCGT
CAATAAACAAATCGAATCGCATCAGATCGAAAAAGTTGTGAGTCCTGTAG
GATCGCAGTATGTTAACGATGTCCTTCTCCTTGGCCGCAATCGTGGTGCG
TACTATGTGCTCCACTTGAGGCCAAATCTGGGCGGGATCCTTGCCCTGAT
CTCGGACATAGGCTTCAAAAACGGTGCGCATGCTGCCGCCAAAGCGATTG
TAGTACTTGCGCAGCGAAGGAACCTCCCAGGTGGGTAAATAGTCATCCCC
CACAATGTACTTGTCCACATTCTCGGCATCGAAGGGATGGTATTTCACCG
GGCAATACCGGAACAGAACGTCGCCCGTGTAGATGTAGACTC

BO05411.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-PA 1551 CG4089-RA 725..1548 842..19 4120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-RA 2022 CG4089-RA 818..1641 842..19 4120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10816172..10816668 842..346 2485 100 Minus
3R 32079331 3R 10816724..10816937 346..133 1070 100 Minus
3R 32079331 3R 10816996..10817109 132..19 570 100 Minus
Blast to na_te.dros performed 2015-02-12 06:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 3721..3797 478..552 110 62.3 Plus

BO05411.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:20 Download gff for BO05411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-PA 725..1551 18..842 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:42 Download gff for BO05411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-PA 725..1551 18..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:58 Download gff for BO05411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 818..1641 19..842 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:42 Download gff for BO05411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 818..1641 19..842 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:42 Download gff for BO05411.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10816172..10816667 347..842 100 -> Minus
3R 10816724..10816937 133..346 100 -> Minus
3R 10816996..10817109 19..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:58 Download gff for BO05411.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6641894..6642389 347..842 100 -> Minus
arm_3R 6642446..6642659 133..346 100 -> Minus
arm_3R 6642718..6642831 19..132 100   Minus

BO05411.5prime Sequence

947 bp (818 high quality bases) assembled on 2005-11-29

> BO05411.5prime
GAAGTTATCAGTCGACATGGATGCCAGTGTAGTGGAGAATGCTCCTAATC
AAAAGGAGGTAGATGGCAAAATGGCTACAACGGAGGAGTCCGAAAAGCCA
TCGAACAGCATTGGACTGCTGCCCATTATGATATTTCTGGCGGCGACAGT
GGCCACGGCCGTGGTGGTGGAGGTGCTGCCCCATGCCAGCAGAGTCTTCC
CCTGGAAGTTAGCAGATTCTTCAGCGGATCAGCTGCAGCCACCGCCCACA
TATGCGATCTTTGGTCGCAGTCCCACGGAGGAGCACCTGGTGCATGTGGT
CAATGTGCTGCACAAGTTTGGCTATAAAAGAGTGGGAGTTAACGATAGCT
GGAATCTCTTGTGGGCCCACGACTATCCATTTCTTTCGTTCGCCAATCTC
AAGAATCTCGGACAGCATCAGGTGGTGAACCATTACCCAGGCTGCGGTTA
CCTAACTAACAAGGTGGACCTATGCACCACCCAGTTGCCCTTTCTACCGC
GTGCCTTTCGATTGCCAGCGGAACGGGAGGAGTTCCTGGACTACGCCAGG
GAGAATCCCCAGGCACTGTTCGTCCAGAAGCACAACGAGCATCGGCACAT
TAAGGTGCGCGCTCCCGCTGACATTGCCTTCGGATCGAACGACTCCTTTG
TCCAGGAATTCGTGCAGCGACCCTATCTGGTGGATGGCCACAAGTTCGAC
ATCGGCGTCTATGTAGTCATTACCTCGGTTAATCCTTTGCGAGTCTACAT
CTACACGGGCGACGTTCTGTTCCGGTATTGCCCGGTGAAATACCATCCCT
TCGATGCCGAGAATGTGGACAAGTACATTGTGGGGGATGACTATTTACCC
ACCTGGGAGGTTCCTTCGCTGCGCAAGTACTACAATCGCTTTGGCGGCAG
CATGCGCACCGTTTTTGAGCCTATGTCCGAGATCANGGGCAGGATCC

BO05411.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-PA 1551 CG4089-RA 1..902 17..918 4510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-RA 2022 CG4089-RA 94..1025 17..947 4590 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10815502..10816379 71..947 4299 99.5 Plus
3R 32079331 3R 10815381..10815434 17..70 270 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:41:21 has no hits.

BO05411.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:21 Download gff for BO05411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-PA 1..932 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:43 Download gff for BO05411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-PA 1..932 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:52 Download gff for BO05411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 89..1025 11..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:56 Download gff for BO05411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 89..1025 11..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:56 Download gff for BO05411.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10815376..10815434 11..70 96 -> Plus
3R 10815502..10816379 71..947 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:52 Download gff for BO05411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6641098..6641156 11..70 96 -> Plus
arm_3R 6641224..6642101 71..947 99   Plus

BO05411.complete Sequence

1582 bp (1582 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630020

> BO05411.complete
GAAGTTATCAGTCGACATGGATGCCAGTGTAGTGGAGAATGCTCCTAATC
AAAAGGAGGTAGATGGCAAAATGGCTACAACGGAGGAGTCCGAAAAGCCA
TCGAACAGCATTGGACTGCTGCCCATTATGATATTTCTGGCGGCGACAGT
GGCCACGGCCGTGGTGGTGGAGGTGCTGCCCCATGCCAGCAGAGTCTTCC
CCTGGAAGTTAGCAGATTCTTCAGCGGATCAGCTGCAGCCACCGCCCACA
TATGCGATCTTTGGTCGCAGTCCCACGGAGGAGCACCTGGTGCATGTGGT
CAATGTGCTGCACAAGTTTGGCTATAAAAGAGTGGGAGTTAACGATAGCT
GGAATCTCTTGTGGGCCCACGACTATCCATTTCTTTCGTTCGCCAATCTC
AAGAATCTCGGACAGCATCAGGTGGTGAACCATTACCCAGGCTGCGGTTA
CCTAACTAACAAGGTGGACCTATGCACCACCCAGTTGCCCTTTCTACCGC
GTGCCTTTCGATTGCCAGCGGAACGGGAGGAGTTCCTGGACTACGCCAGG
GAGAATCCCCAGGCACTGTTCGTCCAGAAGCACAACGAGCATCGGCACAT
TAAGGTGCGCGCTCCCGCTGACATTGCCTTCGGATCGAACGACTCCTTTG
TCCAGGAATTCGTGCAGCGACCCTATCTGGTGGATGGCCACAAGTTCGAC
ATCGGCGTCTATGTAGTCATTACCTCGGTTAATCCTTTGCGAGTCTACAT
CTACACGGGCGACGTTCTGTTCCGGTATTGCCCGGTGAAATACCATCCCT
TCGATGCCGAGAATGTGGACAAGTACATTGTGGGGGATGACTATTTACCC
ACCTGGGAGGTTCCTTCGCTGCGCAAGTACTACAATCGCTTTGGCGGCAG
CATGCGCACCGTTTTTGAAGCCTATGTCCGAGATCAGGGCAAGGATCCCG
CCCAGATTTGGCCTCAAGTGGAGCACATAGTACGCACCACGATTGCGGCC
AAGGAGAAGGACATCGTTAACATACTGCGATCCTACAGGACTCACAACTT
TTTCGATCTGATGCGATTCGATTTGTTTATTGACGAGGATCTGAAAGTTT
TTCTCATGGAGGCCAACATGTCTCCCAATCTTTCTTCTGCCCATTTCAAG
CCCAACTCGCTGTTGTACGAGCAAGTTCTATACAGCGTGTTTAATTTGGT
TGGCATAAGGCCACTTACATCAACAAGTGGCGCATTGCTCGGCGAAAGCA
GCGAGATGATCACAACCGATAAAAACCTGTCCACCGACTTGAATAAATGC
GCTGCACACGATTGCGACAAGTCCTGCAACAAGGAGGAGTGCGATCTTTG
CCTGCAATGCCTCAGTGGCTCGGAGTACAAGATGCTGCAACAGGCTCATC
AGGAGCATCTGCATCGCGTGGACATGAAGCGCATTTTCCCTAAGCCCATT
CGCGATCCAATGAGATTCGATGTTATGGCGGAAACTGCAAACATGTCAAA
GAAAAACGCATGGATGACCCGCTGGTTCCACAACAAATGCCAATTTGATG
CTGTCTGGTGCAATGCAAGCTTTCTAGACCAT

BO05411.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-RA 1551 CG4089-PA 1..1548 17..1564 7740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-RA 2022 CG4089-RA 94..1641 17..1564 7740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10815502..10816668 71..1237 5835 100 Plus
3R 32079331 3R 10816724..10816937 1237..1450 1070 100 Plus
3R 32079331 3R 10816996..10817109 1451..1564 570 100 Plus
3R 32079331 3R 10815381..10815434 17..70 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:54:11 has no hits.

BO05411.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:00 Download gff for BO05411.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..1551 17..1565 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:21 Download gff for BO05411.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 86..1638 11..1564 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:27 Download gff for BO05411.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 94..1641 17..1566 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:00 Download gff for BO05411.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 86..1638 11..1564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:25 Download gff for BO05411.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 94..1641 17..1566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:25 Download gff for BO05411.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10815381..10815434 17..70 100 -> Plus
3R 10815502..10816667 71..1236 100 -> Plus
3R 10816724..10816937 1237..1450 100 -> Plus
3R 10816996..10817109 1451..1566 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:27 Download gff for BO05411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6641103..6641156 17..70 100 -> Plus
arm_3R 6641224..6642389 71..1236 100 -> Plus
arm_3R 6642446..6642659 1237..1450 100 -> Plus
arm_3R 6642718..6642831 1451..1566 98   Plus

BO05411.pep Sequence

Translation from 16 to 1582

> BO05411.pep
MDASVVENAPNQKEVDGKMATTEESEKPSNSIGLLPIMIFLAATVATAVV
VEVLPHASRVFPWKLADSSADQLQPPPTYAIFGRSPTEEHLVHVVNVLHK
FGYKRVGVNDSWNLLWAHDYPFLSFANLKNLGQHQVVNHYPGCGYLTNKV
DLCTTQLPFLPRAFRLPAEREEFLDYARENPQALFVQKHNEHRHIKVRAP
ADIAFGSNDSFVQEFVQRPYLVDGHKFDIGVYVVITSVNPLRVYIYTGDV
LFRYCPVKYHPFDAENVDKYIVGDDYLPTWEVPSLRKYYNRFGGSMRTVF
EAYVRDQGKDPAQIWPQVEHIVRTTIAAKEKDIVNILRSYRTHNFFDLMR
FDLFIDEDLKVFLMEANMSPNLSSAHFKPNSLLYEQVLYSVFNLVGIRPL
TSTSGALLGESSEMITTDKNLSTDLNKCAAHDCDKSCNKEECDLCLQCLS
GSEYKMLQQAHQEHLHRVDMKRIFPKPIRDPMRFDVMAETANMSKKNAWM
TRWFHNKCQFDAVWCNASFLDH

BO05411.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-PA 516 CG4089-PA 1..516 1..516 2770 100 Plus
CG5987-PA 720 CG5987-PA 166..452 102..371 265 27.1 Plus
CG16716-PC 867 CG16716-PC 143..440 94..374 256 25.2 Plus
CG16833-PM 827 CG16833-PM 339..634 97..374 230 26.1 Plus
CG16833-PK 827 CG16833-PK 339..634 97..374 230 26.1 Plus