Clone Sequence Records
BO05411.3prime Sequence
842 bp (778 high quality bases) assembled on 2005-12-02
> BO05411.3prime
ATGGTCTAGAAAGCTTGCATTGCACCAGACAGCATCAAATTGGCATTTGT
TGTGGAACCAGCGGGTCATCCATGCGTTTTTCTTTGACATGTTTGCAGTT
TCCGCCATAACATCGAATCTCATTGGATCGCGAATGGGCTTAGGGAAAAT
GCGCTTCATGTCCACGCGATGCAGATGCTCCTGATGAGCCTGTTGCAGCA
TCTTGTACTCCGAGCCACTGAGGCATTGCAGGCAAAGATCGCACTCCTCC
TTGTTGCAGGACTTGTCGCAATCGTGTGCAGCGCATTTATTCAAGTCGGT
GGACAGGTTTTTATCGGTTGTGATCATCTCGCTGCTTTCGCCGAGCAATG
CGCCACTTGTTGATGTAAGTGGCCTTATGCCAACCAAATTAAACACGCTG
TATAGAACTTGCTCGTACAACAGCGAGTTGGGCTTGAAATGGGCAGAAGA
AAGATTGGGAGACATGTTGGCCTCCATGAGAAAAACTTTCAGATCCTCGT
CAATAAACAAATCGAATCGCATCAGATCGAAAAAGTTGTGAGTCCTGTAG
GATCGCAGTATGTTAACGATGTCCTTCTCCTTGGCCGCAATCGTGGTGCG
TACTATGTGCTCCACTTGAGGCCAAATCTGGGCGGGATCCTTGCCCTGAT
CTCGGACATAGGCTTCAAAAACGGTGCGCATGCTGCCGCCAAAGCGATTG
TAGTACTTGCGCAGCGAAGGAACCTCCCAGGTGGGTAAATAGTCATCCCC
CACAATGTACTTGTCCACATTCTCGGCATCGAAGGGATGGTATTTCACCG
GGCAATACCGGAACAGAACGTCGCCCGTGTAGATGTAGACTC
BO05411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-PA | 1551 | CG4089-RA | 725..1548 | 842..19 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-RA | 2022 | CG4089-RA | 818..1641 | 842..19 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10816172..10816668 | 842..346 | 2485 | 100 | Minus |
3R | 32079331 | 3R | 10816724..10816937 | 346..133 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 10816996..10817109 | 132..19 | 570 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 06:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 3721..3797 | 478..552 | 110 | 62.3 | Plus |
BO05411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:20 Download gff for
BO05411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-PA | 725..1551 | 18..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:42 Download gff for
BO05411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-PA | 725..1551 | 18..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:58 Download gff for
BO05411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 818..1641 | 19..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:42 Download gff for
BO05411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 818..1641 | 19..842 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:42 Download gff for
BO05411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10816172..10816667 | 347..842 | 100 | -> | Minus |
3R | 10816724..10816937 | 133..346 | 100 | -> | Minus |
3R | 10816996..10817109 | 19..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:58 Download gff for
BO05411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6641894..6642389 | 347..842 | 100 | -> | Minus |
arm_3R | 6642446..6642659 | 133..346 | 100 | -> | Minus |
arm_3R | 6642718..6642831 | 19..132 | 100 | | Minus |
BO05411.5prime Sequence
947 bp (818 high quality bases) assembled on 2005-11-29
> BO05411.5prime
GAAGTTATCAGTCGACATGGATGCCAGTGTAGTGGAGAATGCTCCTAATC
AAAAGGAGGTAGATGGCAAAATGGCTACAACGGAGGAGTCCGAAAAGCCA
TCGAACAGCATTGGACTGCTGCCCATTATGATATTTCTGGCGGCGACAGT
GGCCACGGCCGTGGTGGTGGAGGTGCTGCCCCATGCCAGCAGAGTCTTCC
CCTGGAAGTTAGCAGATTCTTCAGCGGATCAGCTGCAGCCACCGCCCACA
TATGCGATCTTTGGTCGCAGTCCCACGGAGGAGCACCTGGTGCATGTGGT
CAATGTGCTGCACAAGTTTGGCTATAAAAGAGTGGGAGTTAACGATAGCT
GGAATCTCTTGTGGGCCCACGACTATCCATTTCTTTCGTTCGCCAATCTC
AAGAATCTCGGACAGCATCAGGTGGTGAACCATTACCCAGGCTGCGGTTA
CCTAACTAACAAGGTGGACCTATGCACCACCCAGTTGCCCTTTCTACCGC
GTGCCTTTCGATTGCCAGCGGAACGGGAGGAGTTCCTGGACTACGCCAGG
GAGAATCCCCAGGCACTGTTCGTCCAGAAGCACAACGAGCATCGGCACAT
TAAGGTGCGCGCTCCCGCTGACATTGCCTTCGGATCGAACGACTCCTTTG
TCCAGGAATTCGTGCAGCGACCCTATCTGGTGGATGGCCACAAGTTCGAC
ATCGGCGTCTATGTAGTCATTACCTCGGTTAATCCTTTGCGAGTCTACAT
CTACACGGGCGACGTTCTGTTCCGGTATTGCCCGGTGAAATACCATCCCT
TCGATGCCGAGAATGTGGACAAGTACATTGTGGGGGATGACTATTTACCC
ACCTGGGAGGTTCCTTCGCTGCGCAAGTACTACAATCGCTTTGGCGGCAG
CATGCGCACCGTTTTTGAGCCTATGTCCGAGATCANGGGCAGGATCC
BO05411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-PA | 1551 | CG4089-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-RA | 2022 | CG4089-RA | 94..1025 | 17..947 | 4590 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10815502..10816379 | 71..947 | 4299 | 99.5 | Plus |
3R | 32079331 | 3R | 10815381..10815434 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:41:21 has no hits.
BO05411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:21 Download gff for
BO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-PA | 1..932 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:43 Download gff for
BO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-PA | 1..932 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:52 Download gff for
BO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 89..1025 | 11..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:56 Download gff for
BO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 89..1025 | 11..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:56 Download gff for
BO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10815376..10815434 | 11..70 | 96 | -> | Plus |
3R | 10815502..10816379 | 71..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:52 Download gff for
BO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6641098..6641156 | 11..70 | 96 | -> | Plus |
arm_3R | 6641224..6642101 | 71..947 | 99 | | Plus |
BO05411.complete Sequence
1582 bp (1582 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630020
> BO05411.complete
GAAGTTATCAGTCGACATGGATGCCAGTGTAGTGGAGAATGCTCCTAATC
AAAAGGAGGTAGATGGCAAAATGGCTACAACGGAGGAGTCCGAAAAGCCA
TCGAACAGCATTGGACTGCTGCCCATTATGATATTTCTGGCGGCGACAGT
GGCCACGGCCGTGGTGGTGGAGGTGCTGCCCCATGCCAGCAGAGTCTTCC
CCTGGAAGTTAGCAGATTCTTCAGCGGATCAGCTGCAGCCACCGCCCACA
TATGCGATCTTTGGTCGCAGTCCCACGGAGGAGCACCTGGTGCATGTGGT
CAATGTGCTGCACAAGTTTGGCTATAAAAGAGTGGGAGTTAACGATAGCT
GGAATCTCTTGTGGGCCCACGACTATCCATTTCTTTCGTTCGCCAATCTC
AAGAATCTCGGACAGCATCAGGTGGTGAACCATTACCCAGGCTGCGGTTA
CCTAACTAACAAGGTGGACCTATGCACCACCCAGTTGCCCTTTCTACCGC
GTGCCTTTCGATTGCCAGCGGAACGGGAGGAGTTCCTGGACTACGCCAGG
GAGAATCCCCAGGCACTGTTCGTCCAGAAGCACAACGAGCATCGGCACAT
TAAGGTGCGCGCTCCCGCTGACATTGCCTTCGGATCGAACGACTCCTTTG
TCCAGGAATTCGTGCAGCGACCCTATCTGGTGGATGGCCACAAGTTCGAC
ATCGGCGTCTATGTAGTCATTACCTCGGTTAATCCTTTGCGAGTCTACAT
CTACACGGGCGACGTTCTGTTCCGGTATTGCCCGGTGAAATACCATCCCT
TCGATGCCGAGAATGTGGACAAGTACATTGTGGGGGATGACTATTTACCC
ACCTGGGAGGTTCCTTCGCTGCGCAAGTACTACAATCGCTTTGGCGGCAG
CATGCGCACCGTTTTTGAAGCCTATGTCCGAGATCAGGGCAAGGATCCCG
CCCAGATTTGGCCTCAAGTGGAGCACATAGTACGCACCACGATTGCGGCC
AAGGAGAAGGACATCGTTAACATACTGCGATCCTACAGGACTCACAACTT
TTTCGATCTGATGCGATTCGATTTGTTTATTGACGAGGATCTGAAAGTTT
TTCTCATGGAGGCCAACATGTCTCCCAATCTTTCTTCTGCCCATTTCAAG
CCCAACTCGCTGTTGTACGAGCAAGTTCTATACAGCGTGTTTAATTTGGT
TGGCATAAGGCCACTTACATCAACAAGTGGCGCATTGCTCGGCGAAAGCA
GCGAGATGATCACAACCGATAAAAACCTGTCCACCGACTTGAATAAATGC
GCTGCACACGATTGCGACAAGTCCTGCAACAAGGAGGAGTGCGATCTTTG
CCTGCAATGCCTCAGTGGCTCGGAGTACAAGATGCTGCAACAGGCTCATC
AGGAGCATCTGCATCGCGTGGACATGAAGCGCATTTTCCCTAAGCCCATT
CGCGATCCAATGAGATTCGATGTTATGGCGGAAACTGCAAACATGTCAAA
GAAAAACGCATGGATGACCCGCTGGTTCCACAACAAATGCCAATTTGATG
CTGTCTGGTGCAATGCAAGCTTTCTAGACCAT
BO05411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-RA | 1551 | CG4089-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-RA | 2022 | CG4089-RA | 94..1641 | 17..1564 | 7740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10815502..10816668 | 71..1237 | 5835 | 100 | Plus |
3R | 32079331 | 3R | 10816724..10816937 | 1237..1450 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 10816996..10817109 | 1451..1564 | 570 | 100 | Plus |
3R | 32079331 | 3R | 10815381..10815434 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:54:11 has no hits.
BO05411.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:00 Download gff for
BO05411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 1..1551 | 17..1565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:21 Download gff for
BO05411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 86..1638 | 11..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:27 Download gff for
BO05411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 94..1641 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:00 Download gff for
BO05411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 86..1638 | 11..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:25 Download gff for
BO05411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 94..1641 | 17..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:25 Download gff for
BO05411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10815381..10815434 | 17..70 | 100 | -> | Plus |
3R | 10815502..10816667 | 71..1236 | 100 | -> | Plus |
3R | 10816724..10816937 | 1237..1450 | 100 | -> | Plus |
3R | 10816996..10817109 | 1451..1566 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:27 Download gff for
BO05411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6641103..6641156 | 17..70 | 100 | -> | Plus |
arm_3R | 6641224..6642389 | 71..1236 | 100 | -> | Plus |
arm_3R | 6642446..6642659 | 1237..1450 | 100 | -> | Plus |
arm_3R | 6642718..6642831 | 1451..1566 | 98 | | Plus |
BO05411.pep Sequence
Translation from 16 to 1582
> BO05411.pep
MDASVVENAPNQKEVDGKMATTEESEKPSNSIGLLPIMIFLAATVATAVV
VEVLPHASRVFPWKLADSSADQLQPPPTYAIFGRSPTEEHLVHVVNVLHK
FGYKRVGVNDSWNLLWAHDYPFLSFANLKNLGQHQVVNHYPGCGYLTNKV
DLCTTQLPFLPRAFRLPAEREEFLDYARENPQALFVQKHNEHRHIKVRAP
ADIAFGSNDSFVQEFVQRPYLVDGHKFDIGVYVVITSVNPLRVYIYTGDV
LFRYCPVKYHPFDAENVDKYIVGDDYLPTWEVPSLRKYYNRFGGSMRTVF
EAYVRDQGKDPAQIWPQVEHIVRTTIAAKEKDIVNILRSYRTHNFFDLMR
FDLFIDEDLKVFLMEANMSPNLSSAHFKPNSLLYEQVLYSVFNLVGIRPL
TSTSGALLGESSEMITTDKNLSTDLNKCAAHDCDKSCNKEECDLCLQCLS
GSEYKMLQQAHQEHLHRVDMKRIFPKPIRDPMRFDVMAETANMSKKNAWM
TRWFHNKCQFDAVWCNASFLDH
BO05411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-PA | 516 | CG4089-PA | 1..516 | 1..516 | 2770 | 100 | Plus |
CG5987-PA | 720 | CG5987-PA | 166..452 | 102..371 | 265 | 27.1 | Plus |
CG16716-PC | 867 | CG16716-PC | 143..440 | 94..374 | 256 | 25.2 | Plus |
CG16833-PM | 827 | CG16833-PM | 339..634 | 97..374 | 230 | 26.1 | Plus |
CG16833-PK | 827 | CG16833-PK | 339..634 | 97..374 | 230 | 26.1 | Plus |