Clone Sequence Records
BO05414.3prime Sequence
907 bp (794 high quality bases) assembled on 2005-12-02
> BO05414.3prime
ATGGTCTAGAAAGCTTGCGTTGCTCATTTGGAGCCCACCACTGCTGCGGC
TACCCGTCGATGAGGAGCCCGTTAGCCCGAACTGCGAGACCAGCTTGTCG
TAGTCCTCCAGCGAGGTCTCGAACTGCTCCAGTTGCCGGGACAGATCGTC
CATGGCGCTGGCATCAGCGGAACTGGTTGCGATCGCTGTGGCCGCCGCCG
TCGGACCGCATGCTGCTACACCGCCGGAACCACTGGATGCTGGCGGGGTC
GAGGAAATCGATGAGATCTCTGCCTGCAGTTCATTAAGTCCCTTCAGCGG
TGGCGCATGATAGCATTCCCTGTAGAACTTGGCCAGATCGTTTACGTGCG
ACGTGGGCGAGGCGAAAGGGAAGTGGAGCTCTTTTAGCAGATTATCATCA
TCAGGCGGTGGTTGTAGCGAAGGCTCTGAATGGTGACGATATGTGGCTGT
GGCGCTGGCGGGGATCAGCAGGCTCTTTATTGGCGATACTGAGTTTTCCG
AGTTCTTCTCGAAACTCTTGAAGCCTGCCGAGTTGTTGTTGAGATTGCTG
ATCTGGTTGAATTTACTATCCTGCGTACTATTGTTGTTATTACTGATGTT
TACACTGGCGACCGAATTGTTATCCAGTCGATTGAGGGACTCCACAGAGC
CGCGTCCTCGCAAAAGCCACTCGAAAGGCGGGGTTTCCGGCAACACAAAG
TCATCTTCAGTGTACTGCTTTAGTTTGCCCATATCTGTGAAGGCTCCCGG
TCGCAACGGCTTCTCTATATCGATAAACCGCCGATCGGCTGTACCCTGGG
CGGGATTTANGGCACCCAAGCCCAGTTTCTTGGCCACGACAGTGCCATTT
TGAGTCTGCTGCTGGTTGCCAGGTGTATTGGCATCCGTGGCGGGTCTAAA
GTGATCC
BO05414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7331-PA | 1572 | CG7331-RA | 681..1569 | 907..19 | 4426 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg13-RA | 3003 | CG7331-RA | 1000..1888 | 907..19 | 4434 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8350814..8351702 | 907..19 | 4434 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:17:05 has no hits.
BO05414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:24 Download gff for
BO05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7331-PA | 681..1572 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:47 Download gff for
BO05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7331-PA | 681..1572 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:28 Download gff for
BO05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg13-RA | 1000..1893 | 13..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:07 Download gff for
BO05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg13-RA | 1000..1893 | 13..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:07 Download gff for
BO05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8350814..8351707 | 13..907 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:28 Download gff for
BO05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4176536..4177429 | 13..907 | 99 | | Minus |
BO05414.5prime Sequence
975 bp (772 high quality bases) assembled on 2005-11-29
> BO05414.5prime
GAAGTTATCAGTCGACATGTCGGCGCAGCGTCTAAATGCAGCGGAACGGG
ATTTGGAGAAGTTCATCAAGTTCCTGGTCTTGAAGTCCACCCAGGTGGTG
GTGCAGTCCCGACTGGGCGAGAAGATGCAGACACAGTGCAATCCACTGGC
GGGCAGTGATTGGTTTAACATAGCCGTGCAGGATCATCCGGAGGTCCTGG
ACGAGACCAAGCGGGCTCTGAACCTAAAGACAGGAGAGAGCATTCTGCAG
CGCCTGCCGTTGTGCGTGGAAATATCCCTGAAAACGACTGAGGGTGACCA
GATGGTGTTGGAGGTGTGGTCCCTAGACCTGCTCCAGCCCCAGAATGGTG
CCTCCCCGGCCACCAATGACCTGAACCCCGAAGGCCAGACCCTAAAGGCA
GCCCACGCCATCTACAATCGCATGGGCATCATGCTCAAGTCCCTCATATC
GCTGACCCGCACCACGCCCGCCTACAAATTATCCCGGCGCCAGTGCCCCG
ACTCGTATGGCATCTTCTACAGGATCTACGTGGACAGGCCGCAGGTCCAC
ACCCTGGGCGAGGGTCACAAGCACGTAAAGATCGGACAACTCAGCACGAT
TGTTGGCTCGCTGGTCATGTCCGTGGCCTACCGCACAAAGCTGACCATTT
CGCCCACGGCTGCCCAGTCAGAGAGCAACACCATAATGCTGAAGTCGGAT
CACTTTAGACCCGCCACGGATGCCAATACACCTGGCAACCAGCAGCAGAC
TCAAAATGGCACTGTCGTGGCCAAGAAACTGGGCTTGGGTGCCCTAAATC
CCGCCCAGGGTACAGCCGATCGGCGGTTTATCGATATAGAGAAGCCGTTG
CGACCGGGAGCCTTCACAGATATGGGCAAACTAAAGCAGTACACTGAAGA
TGACTTTGTGTTTGCGGAAACCCCGCCTTTCGAGTGGCTTTTGCGAGGAC
GCGGGCTCTGTGGAGTCCCTCAATC
BO05414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7331-PA | 1572 | CG7331-RA | 1..938 | 17..954 | 4640 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg13-RA | 3003 | CG7331-RA | 320..1277 | 17..975 | 4740 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8350134..8351091 | 17..975 | 4715 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:56:50 has no hits.
BO05414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:25 Download gff for
BO05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7331-PA | 1..958 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:48 Download gff for
BO05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7331-PA | 1..958 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:29 Download gff for
BO05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg13-RA | 317..1277 | 14..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:48 Download gff for
BO05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg13-RA | 317..1277 | 14..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:48 Download gff for
BO05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8350131..8351091 | 14..975 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:29 Download gff for
BO05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4175853..4176813 | 14..975 | 99 | | Plus |
BO05414.complete Sequence
1603 bp (1603 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630021
> BO05414.complete
GAAGTTATCAGTCGACATGTCGGCGCAGCGTCTAAATGCAGCGGAACGGG
ATTTGGAGAAGTTCATCAAGTTCCTGGTCTTGAAGTCCACCCAGGTGGTG
GTGCAGTCCCGACTGGGCGAGAAGATGCAGACACAGTGCAATCCACTGGC
GGGCAGTGATTGGTTTAACATAGCCGTGCAGGATCATCCGGAGGTCCTGG
ACGAGACCAAGCGGGCTCTGAACCTAAAGACAGGAGAGAGCATTCTGCAG
CGCCTGCCGTTGTGCGTGGAAATATCCCTGAAAACGACTGAGGGTGACCA
GATGGTGTTGGAGGTGTGGTCCCTAGACCTGCTCCAGCCCCAGAATGGTG
CCTCCCCGGCCACCAATGACCTGAACCCCGAAGGCCAGACCCTAAAGGCA
GCCCACGCCATCTACAATCGCATGGGCATCATGCTCAAGTCCCTCATATC
GCTGACCCGCACCACGCCCGCCTACAAATTATCCCGGCGCCAGTGCCCCG
ACTCGTATGGCATCTTCTACAGGATCTACGTGGACAGGCCGCAGGTCCAC
ACCCTGGGCGAGGGTCACAAGCACGTAAAGATCGGACAACTCAGCACGAT
TGTTGGCTCGCTGGTCATGTCCGTGGCCTACCGCACAAAGCTGACCATTT
CGCCCACGGCTGCCCAGTCAGAGAGCAACACCATAATGCTGAAGTCGGAT
CACTTTAGACCCGCCACGGATGCCAATACACCTGGCAACCAGCAGCAGAC
TCAAAATGGCACTGTCGTGGCCAAGAAACTGGGCTTGGGTGCCCTAAATC
CCGCCCAGGGTACAGCCGATCGGCGGTTTATCGATATAGAGAAGCCGTTG
CGACCGGGAGCCTTCACAGATATGGGCAAACTAAAGCAGTACACTGAAGA
TGACTTTGTGTTGCCGGAAACCCCGCCTTTCGAGTGGCTTTTGCGAGGAC
GCGGCTCTGTGGAGTCCCTCAATCGACTGGATAACAATTCGGTCGCCAGT
GTAAACATCAGTAATAACAACAATAGTACGCAGGATAGTAAATTCAACCA
GATCAGCAATCTCAACAACAACTCGGCAGGCTTCAAGAGTTTCGAGAAGA
ACTCGGAAAACTCAGTATCGCCAATAAAGAGCCTGCTGATCCCCGCCAGC
GCCACAGCCACATATCGTCACCATTCAGAGCCTTCGCTACAACCACCGCC
TGATGATGATAATCTGCTAAAAGAGCTCCACTTCCCTTTCGCCTCGCCCA
CGTCGCACGTAAACGATCTGGCCAAGTTCTACAGGGAATGCTATCATGCG
CCACCGCTGAAGGGACTTAATGAACTGCAGGCAGAGATCTCATCGATTTC
CTCGACCCCGCCAGCATCCAGTGGTTCCGGCGGTGTAGCAGCATGCGGTC
CGACGGCGGCGGCCACAGCGATCGCAACCAGTTCCGCTGATGCCAGCGCC
ATGGACGATCTGTCCCGGCAACTGGAGCAGTTCGAGACCTCGCTGGAGGA
CTACGACAAGCTGGTCTCGCAGTTCGGGCTAACGGGCTCCTCATCGACGG
GTAGCCGCAGCAGTGGTGGGCTCCAAATGAGCAACGCAAGCTTTCTAGAC
CAT
BO05414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg13-RA | 1572 | CG7331-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg13-RA | 3003 | CG7331-RA | 320..1888 | 17..1585 | 7845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8350134..8351702 | 17..1585 | 7845 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:10:21 has no hits.
BO05414.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:01 Download gff for
BO05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7331-RA | 1..1572 | 17..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:23 Download gff for
BO05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7331-RA | 313..1889 | 14..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:21 Download gff for
BO05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg13-RA | 320..1888 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:01 Download gff for
BO05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7331-RA | 313..1889 | 14..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:27 Download gff for
BO05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg13-RA | 320..1888 | 17..1587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:27 Download gff for
BO05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8350134..8351702 | 17..1587 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:21 Download gff for
BO05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4175856..4177424 | 17..1587 | 99 | | Plus |
BO05414.pep Sequence
Translation from 16 to 1603
> BO05414.pep
MSAQRLNAAERDLEKFIKFLVLKSTQVVVQSRLGEKMQTQCNPLAGSDWF
NIAVQDHPEVLDETKRALNLKTGESILQRLPLCVEISLKTTEGDQMVLEV
WSLDLLQPQNGASPATNDLNPEGQTLKAAHAIYNRMGIMLKSLISLTRTT
PAYKLSRRQCPDSYGIFYRIYVDRPQVHTLGEGHKHVKIGQLSTIVGSLV
MSVAYRTKLTISPTAAQSESNTIMLKSDHFRPATDANTPGNQQQTQNGTV
VAKKLGLGALNPAQGTADRRFIDIEKPLRPGAFTDMGKLKQYTEDDFVLP
ETPPFEWLLRGRGSVESLNRLDNNSVASVNISNNNNSTQDSKFNQISNLN
NNSAGFKSFEKNSENSVSPIKSLLIPASATATYRHHSEPSLQPPPDDDNL
LKELHFPFASPTSHVNDLAKFYRECYHAPPLKGLNELQAEISSISSTPPA
SSGSGGVAACGPTAAATAIATSSADASAMDDLSRQLEQFETSLEDYDKLV
SQFGLTGSSSTGSRSSGGLQMSNASFLDH
BO05414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg13-PA | 523 | CG7331-PA | 1..523 | 1..523 | 2676 | 100 | Plus |
