Clone Sequence Records
BO05415.3prime Sequence
910 bp (834 high quality bases) assembled on 2005-12-02
> BO05415.3prime
ATGGTCTAGAAAGCTTGCGACGGACTTGATAAGGCGATCCTGCCGCTCGA
AGAGTTTCGTCTTGTTGGCCAGTGTCTCAGTGGCTGTTGCAATGACACCA
CTGGTAGCAGCCATGGCGGCTGATGTGGCACTGGCCAGCCGCTCCTGCAT
CACGGCGGTCAAGCACTCCCGGAATCCCAGCAGGAATTCATCTGCATTCT
CCCGGTTGAAGCACATGGGTGGCTTTAGCTTGATCACGTTATCGTTGGGA
CCGTCGGAGGAAACGAGCACCCGGTGGAGCTGCTTCATCCGGTTGACCAC
CCAGTGGGCAGCCTTCTTGTCGGGAATACGCTCCTTCCGATCCTGGACCA
GCTCTATGCCCACGAAGAGTCCAGCGCCTCGCACATCGCCAATGCACTCG
AATTCTTGCTTCAGACGATTGCACTCCTCCAAAAGATAATCGCCCAAAAC
AAGAGCCTTCTGTTGCAGACCCTCCTCCTCGATAACGCGCATCACTGCAT
TGGCGATCGCACAGGAGACCGGATTGCCGCCATAAGTGTTAAAGTAAGCA
ACTCCGGTGGCATGGAAGGCCTGAGCGATTTCCGGAGTGGTAACTACCGC
ACCCACCGGATGTCCATTGCCCATGGGCTTGGCCACACACACAATATCGG
GGATTACGTTTTGGGTCTCGAATGCCCAATAGTGGCTGCCCACGCGTCCA
AATCCCACCTGAACCTCGTCAGCAATGCAAACGCCTCCGGCAGAGCGTAC
CGCATCGTAGACTGCCTGGAAGTATCCGGCTGGTGGCAAAATCTGTCCAC
CGCAACTCTGCAGACTCTCGGCAATGAAGGCGGCGACGCCCTGTCCTTTG
GCCAACTGCTTCTGGCAGATCTCCTCGATGGGCTGAGCATACAGGGCACC
CATGTCAGCA
BO05415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8745-PA | 1485 | CG8745-RA | 591..1482 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8745-RA | 2429 | CG8745-RA | 805..1696 | 910..19 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13860760..13861651 | 19..910 | 4460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:38:50 has no hits.
BO05415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:26 Download gff for
BO05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-PA | 592..1485 | 16..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:50 Download gff for
BO05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-PA | 592..1485 | 16..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:00 Download gff for
BO05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-RA | 806..1702 | 13..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:29 Download gff for
BO05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-RA | 806..1702 | 13..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:29 Download gff for
BO05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13860754..13861650 | 13..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:00 Download gff for
BO05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13853854..13854750 | 13..909 | 99 | | Plus |
BO05415.5prime Sequence
914 bp (803 high quality bases) assembled on 2005-11-29
> BO05415.5prime
GAAGTTATCAGTCGACATGCCTTTCGCCCACGAGCAACTGAATCTGGTGG
CCAGCGAGCAGCTGAGCAAAACGGAGACCATCAAGCTGCGCAACCAGCAC
ATCGGACAAGCCTGCCAGCTCTTCTATCGCTCTGATCCCCTGAAAATTGT
GCGCGGTCAAGGTCAATATATGTTTGATGAGGAGGGCACCCGGTATCTGG
ACTGCATCAACAATGTAGCCCACGTGGGTCATTGCCATCCGGAGGTGGTG
CGAGCTGGAGCCCTGCAGATGGCCACCATCTCGACGAACAACCGCTTCCT
CCACGACGAACTGGTCCAGTGTGCTCGCACGTTGACCAGCAAAATGCCGG
AGCCTCTGTCCGTTTGCTTCTTCGTCAATTCCGGATCCGAGGCCAATGAC
CTGGCCCTTCGATTGGCCCGCAACTTTACTAAGCGTCAGGATGTTATCAC
TCTCGACCATGCCTATCATGGTCATCTGCAGTCGGTGATGGAGGTGTCTC
CATACAAATTTAACCAGCCCGGCGGCGAGGCCAAGCCCGACTACGTGCAT
GTGGCGCCGTGCCCGGACGTTTATGGCGGAAAGTTTACGGACAAGATGTA
TCCGGATGCTGACATGGGTGCCCTGTATGCTCAGCCCATCGAGGAGATCT
GCCAGAAGCAGTTGGCCAAAGGACAGGGCGTCGCCGCCTTCATTGCCGAG
AGTCTGCAGAGTTGCGGTGGACAGATTTTGCCACCAGCCGGATACTTCCA
GGCAGTCTACGATGCGGTACGCTCTGCCGGAGGCGTTTGCATTGCTGACG
AGGTTCAGGTGGGATTTGGACGCGTGGGCAGCCACTATTGGGCATTCGAG
ACCCAAACGTAATCCCCGATATTGTGTGTGTGGGCCAGCCCATGGGCAAT
GGACATCCGGTGGG
BO05415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8745-PA | 1485 | CG8745-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG8745-PA | 1485 | CG8745-RA | 840..899 | 855..914 | 250 | 96.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8745-RA | 2429 | CG8745-RA | 215..1113 | 17..914 | 4440 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13861343..13861798 | 914..460 | 2200 | 99.3 | Minus |
| 3L | 28110227 | 3L | 13861919..13862154 | 459..224 | 1180 | 100 | Minus |
| 3L | 28110227 | 3L | 13865317..13865436 | 224..105 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 13866603..13866691 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:48:43 has no hits.
BO05415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:27 Download gff for
BO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-PA | 1..899 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:52 Download gff for
BO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-PA | 1..899 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:33 Download gff for
BO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-RA | 215..1113 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:53 Download gff for
BO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-RA | 215..1113 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:53 Download gff for
BO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13861343..13861798 | 460..914 | 99 | <- | Minus |
| 3L | 13861919..13862153 | 225..459 | 100 | <- | Minus |
| 3L | 13865317..13865435 | 106..224 | 100 | <- | Minus |
| 3L | 13866603..13866691 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:33 Download gff for
BO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13854443..13854898 | 460..914 | 99 | <- | Minus |
| arm_3L | 13855019..13855253 | 225..459 | 100 | <- | Minus |
| arm_3L | 13858417..13858535 | 106..224 | 100 | <- | Minus |
| arm_3L | 13859703..13859791 | 17..105 | 100 | | Minus |
BO05415.complete Sequence
1516 bp (1516 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630022
> BO05415.complete
GAAGTTATCAGTCGACATGCCTTTCGCCCACGAGCAACTGAATCTGGTGG
CCAGCGAGCAGCTGAGCAAAACGGAGACCATCAAGCTGCGCAACCAGCAC
ATCGGACAAGCCTGCCAGCTCTTCTATCGCTCTGATCCCCTGAAAATTGT
GCGCGGTCAAGGTCAATATATGTTTGATGAGGAGGGCACCCGGTATCTGG
ACTGCATCAACAATGTAGCCCACGTGGGTCATTGCCATCCGGAGGTGGTG
CGAGCTGGAGCCCTGCAGATGGCCACCATCTCGACGAACAACCGCTTCCT
CCACGACGAACTGGTCCAGTGTGCTCGCACGTTGACCAGCAAAATGCCGG
AGCCTCTGTCCGTTTGCTTCTTCGTCAATTCCGGATCCGAGGCCAATGAC
CTGGCCCTTCGATTGGCCCGCAACTTTACTAAGCGTCAGGATGTTATCAC
TCTCGACCATGCCTATCATGGTCATCTGCAGTCGGTGATGGAGGTGTCTC
CATACAAATTTAACCAGCCCGGCGGCGAGGCCAAGCCCGACTACGTGCAT
GTGGCGCCGTGCCCGGACGTTTATGGCGGAAAGTTTACGGACAAGATGTA
TCCGGATGCTGACATGGGTGCCCTGTATGCTCAGCCCATCGAGGAGATCT
GCCAGAAGCAGTTGGCCAAAGGACAGGGCGTCGCCGCCTTCATTGCCGAG
AGTCTGCAGAGTTGCGGTGGACAGATTTTGCCACCAGCCGGATACTTCCA
GGCAGTCTACGATGCGGTACGCTCTGCCGGAGGCGTTTGCATTGCTGACG
AGGTTCAGGTGGGATTTGGACGCGTGGGCAGCCACTATTGGGCATTCGAG
ACCCAAAACGTAATCCCCGATATTGTGTGTGTGGCCAAGCCCATGGGCAA
TGGACATCCGGTGGGTGCGGTAGTTACCACTCCGGAAATCGCTCAGGCCT
TCCATGCCACCGGAGTTGCTTACTTTAACACTTATGGCGGCAATCCGGTC
TCCTGTGCGATCGCCAATGCAGTGATGCGCGTTATCGAGGAGGAGGGTCT
GCAACAGAAGGCTCTTGTTTTGGGCGATTATCTTTTGGAGGAGTGCAATC
GTCTGAAGCAAGAATTCGAGTGCATTGGCGATGTGCGAGGCGCTGGACTC
TTCGTGGGCATAGAGCTGGTCCAGGATCGGAAGGAGCGTATTCCCGACAA
GAAGGCTGCCCACTGGGTGGTCAACCGGATGAAGCAGCTCCACCGGGTGC
TCGTTTCCTCCGACGGTCCCAACGATAACGTGATCAAGCTAAAGCCACCC
ATGTGCTTCAACCGGGAGAATGCAGATGAATTCCTGCTGGGATTCCGGGA
GTGCTTGACCGCCGTGATGCAGGAGCGGCTGGCCAGTGCCACATCAGCCG
CCATGGCTGCTACCAGTGGTGTCATTGCAACAGCCACTGAGACACTGGCC
AACAAGACGAAACTCTTCGAGCGGCAGGATCGCCTTATCAAGTCCGTCGC
AAGCTTTCTAGACCAT
BO05415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8745-RA | 1485 | CG8745-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8745-RA | 2429 | CG8745-RA | 215..1696 | 17..1498 | 7410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13860760..13861798 | 1498..460 | 5195 | 100 | Minus |
| 3L | 28110227 | 3L | 13861919..13862154 | 459..224 | 1180 | 100 | Minus |
| 3L | 28110227 | 3L | 13865317..13865436 | 224..105 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 13866603..13866691 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:41:55 has no hits.
BO05415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:02 Download gff for
BO05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-RA | 1..1485 | 17..1501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:25 Download gff for
BO05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-RA | 195..1682 | 17..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:43 Download gff for
BO05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-RA | 215..1696 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:03 Download gff for
BO05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-RA | 195..1682 | 17..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:24 Download gff for
BO05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8745-RA | 215..1696 | 17..1500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:24 Download gff for
BO05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13866603..13866691 | 17..105 | 100 | | Minus |
| 3L | 13860757..13861798 | 460..1500 | 99 | <- | Minus |
| 3L | 13861919..13862153 | 225..459 | 100 | <- | Minus |
| 3L | 13865317..13865435 | 106..224 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:43 Download gff for
BO05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13859703..13859791 | 17..105 | 100 | | Minus |
| arm_3L | 13853857..13854898 | 460..1500 | 99 | <- | Minus |
| arm_3L | 13855019..13855253 | 225..459 | 100 | <- | Minus |
| arm_3L | 13858417..13858535 | 106..224 | 100 | <- | Minus |
BO05415.pep Sequence
Translation from 16 to 1516
> BO05415.pep
MPFAHEQLNLVASEQLSKTETIKLRNQHIGQACQLFYRSDPLKIVRGQGQ
YMFDEEGTRYLDCINNVAHVGHCHPEVVRAGALQMATISTNNRFLHDELV
QCARTLTSKMPEPLSVCFFVNSGSEANDLALRLARNFTKRQDVITLDHAY
HGHLQSVMEVSPYKFNQPGGEAKPDYVHVAPCPDVYGGKFTDKMYPDADM
GALYAQPIEEICQKQLAKGQGVAAFIAESLQSCGGQILPPAGYFQAVYDA
VRSAGGVCIADEVQVGFGRVGSHYWAFETQNVIPDIVCVAKPMGNGHPVG
AVVTTPEIAQAFHATGVAYFNTYGGNPVSCAIANAVMRVIEEEGLQQKAL
VLGDYLLEECNRLKQEFECIGDVRGAGLFVGIELVQDRKERIPDKKAAHW
VVNRMKQLHRVLVSSDGPNDNVIKLKPPMCFNRENADEFLLGFRECLTAV
MQERLASATSAAMAATSGVIATATETLANKTKLFERQDRLIKSVASFLDH
BO05415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8745-PA | 494 | CG8745-PA | 1..494 | 1..494 | 2590 | 100 | Plus |
| CG11241-PA | 508 | CG11241-PA | 52..489 | 12..436 | 736 | 39.6 | Plus |
| CG11241-PC | 518 | CG11241-PC | 52..516 | 12..463 | 731 | 37.9 | Plus |
| CG11241-PB | 518 | CG11241-PB | 52..516 | 12..463 | 731 | 37.9 | Plus |
| Oat-PA | 431 | CG8782-PA | 49..422 | 37..437 | 297 | 25.9 | Plus |
