Clone Sequence Records
BO05416.3prime Sequence
902 bp (882 high quality bases) assembled on 2005-12-02
> BO05416.3prime
ATGGTCTAGAAAGCTTGCCATCCGCACCTGGAACTTGCCCGCCTTGGTCA
GGTATTTGACGCCCTTGAAAGGCTTGTACTTCTCGCCGTACATGTCCAGG
CGATTTACCTTTAGCCCAGAGACGGCCAGCTGCGAGATTTGGAACTGGAC
ATTCACGGATGGATTGGCATCGATGTTGGTCGTACCGGGCGTAATGGAAA
CCGATCCCCTAATATTTGGCAACTTGGAAACATCGATCCGTCCCACATCC
CAGGACAGCGTCTTGGTCACCGAATCGAAGGTATACTTTCCCTGATTCGG
CGTCAATAGGCAATTAAGCACACACCGCGGCATGGTCAGCTCCAGCTTCA
CCTTGTCAACGGTGCGACCAAGGGTGTTCCTCGGGCCAATCGTGAGGTCC
AGACGCCCCTGCTCACCCGTTTTGATCGAAAAGTTGTGCCTGATGTAGAT
GGGTATGGCCACCACGGACTGAGAGCTAATGTGATATGACATCAGGCGGA
AGTTTCCGTCGGGCGGGATAAAGGAGAGCAGGCGCTCCGCCTCCCAGCGC
TTGTAGCGCACGCAAGGATGGAAGGAAACGTCGTCGAAGAGGCGAGGATT
CATGAAAGATAACGTCAGATCTGGCATGCCGGATAACTTAATGCAGCAGT
CGATGTGTCCCTGGATCTCGGCAAAGACCGTGGATCCGGATTTATCAATG
ATAGCGTCCACCTCCTCGATGACATCGAAGTACGCCTCGTTGTTGGTGTA
CCTCACGCCGCTTCTGCGCCAGCGAACCGCCGACAGCTGACCCGAGGGCA
AAGTAGTGCTTACATTGCTCTTGCCCGTCACCGTGTTGGCAATGGTGCGC
AGGATATTGGGCGGCTTGATCAGCTCCTTGAGGATGTTGCTCTCGGTGGC
CA
BO05416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3035-PA | 1248 | cm-RA | 362..1245 | 902..19 | 4420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cm-RB | 1774 | CG3035-RB | 416..1299 | 902..19 | 4420 | 100 | Minus |
| cm-RA | 1469 | CG3035-RA | 416..1299 | 902..19 | 4420 | 100 | Minus |
| Inx7-RB | 1690 | CG2977-RB | 1..271 | 297..27 | 1355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7009772..7010226 | 200..654 | 2275 | 100 | Plus |
| X | 23542271 | X | 7009481..7009664 | 19..202 | 920 | 100 | Plus |
| X | 23542271 | X | 7010283..7010442 | 655..814 | 800 | 100 | Plus |
| X | 23542271 | X | 7010519..7010606 | 815..902 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:24:20 has no hits.
BO05416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:21:28 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:53 Download gff for
BO05416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3035-PA | 363..1248 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:45 Download gff for
BO05416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 417..1299 | 19..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:29:46 Download gff for
BO05416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 417..1299 | 19..901 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:29:46 Download gff for
BO05416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7009481..7009663 | 19..201 | 100 | <- | Plus |
| X | 7009774..7010226 | 202..654 | 100 | <- | Plus |
| X | 7010283..7010442 | 655..814 | 100 | <- | Plus |
| X | 7010519..7010605 | 815..901 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:45 Download gff for
BO05416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6903514..6903696 | 19..201 | 100 | <- | Plus |
| arm_X | 6903807..6904259 | 202..654 | 100 | <- | Plus |
| arm_X | 6904316..6904475 | 655..814 | 100 | <- | Plus |
| arm_X | 6904552..6904638 | 815..901 | 100 | | Plus |
BO05416.5prime Sequence
898 bp (814 high quality bases) assembled on 2005-12-02
> BO05416.5prime
GAAGTTATCAGTCGACATGATACACAGTCTGTTTATTGTAAACAGCGGCG
GCGAGGTCTTCCTGGAAAAGCATTGGCGCTCGGTTGTCTCGAGATCTGTG
TGCGAATACTTCCTTGACGCCCAGCGCGCTGCTCCATATGATGTGCCGCC
GGTGATAGCCACGCCCCACTACTACCTGATTACAGTGCAAAGGGACACGG
TGTCTTTGGTCGCCGCCTGCAAGCAGGAGGTGCCGCCGCTCTTTGTCATC
GAGTTCCTGCATCGCGTGGTGGACACCTTCCAGGACTATTTCGGCGACTG
CTCCGAGTCCGTGATCAAGGACAACTATGTGGTCGTTTACGAGCTGCTGG
ACGAGATGCTCGATAATGGCTTCCCACTGGCCACCGAGAGCAACATCCTC
AAGGAGCTGATCAAGCCGCCCAATATCCTGCGCACCATTGCCAACACGGT
GACGGGCAAGAGCAATGTAAGCACTACTTTGCCCTCGGGTCAGCTGTCGG
CGGTTCGCTGGCGCAGAAGCGGCGTGAGGTACACCAACAACGAGGCGTAC
TTCGATGTCATCGAGGAGGTGGACGCTATCATTGATAAATCCGGATCCAC
GGTCTTTGCCGAGATCCAGGGACACATCGACTGCTGCATTAAGTTATCCG
GCATGCCAGATCTGACGTTATCTTTCATGAATCCTCGCCTCTTCGACGAC
GTTTCCTTCCATCCTTGCGTGCGCTACAAGCGCTGGGAGGCGGAGCGCCT
GCTCTCCTTTATCCCGCCCGACGGAAACTTCCGCCTGATGTCATATCACA
TTAGCTCTCAGTCCGTGGTGGCCATACCCATCTACATCAGGCACAACTTT
TCGATCAAAACGGGTGAGCAGGGGCGTCTGGACCTCACGATTGGCCCG
BO05416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3035-PA | 1248 | cm-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cm-RB | 1774 | CG3035-RB | 55..936 | 17..898 | 4410 | 100 | Plus |
| cm-RA | 1469 | CG3035-RA | 55..936 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7010519..7010844 | 465..140 | 1630 | 100 | Minus |
| X | 23542271 | X | 7009954..7010226 | 898..626 | 1365 | 100 | Minus |
| X | 23542271 | X | 7010283..7010442 | 625..466 | 800 | 100 | Minus |
| X | 23542271 | X | 7010899..7010988 | 140..51 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:17:12 has no hits.
BO05416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:21:29 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:55 Download gff for
BO05416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3035-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:29 Download gff for
BO05416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..936 | 11..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:22 Download gff for
BO05416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..936 | 11..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:22 Download gff for
BO05416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7009954..7010226 | 626..898 | 100 | <- | Minus |
| X | 7010283..7010442 | 466..625 | 100 | <- | Minus |
| X | 7010519..7010844 | 140..465 | 100 | <- | Minus |
| X | 7010900..7010987 | 52..139 | 100 | <- | Minus |
| X | 7011057..7011099 | 11..51 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:29 Download gff for
BO05416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6903987..6904259 | 626..898 | 100 | <- | Minus |
| arm_X | 6904316..6904475 | 466..625 | 100 | <- | Minus |
| arm_X | 6904552..6904877 | 140..465 | 100 | <- | Minus |
| arm_X | 6904933..6905020 | 52..139 | 100 | <- | Minus |
| arm_X | 6905090..6905132 | 11..51 | 93 | | Minus |
BO05416.complete Sequence
1279 bp (1279 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630023
> BO05416.complete
GAAGTTATCAGTCGACATGATACACAGTCTGTTTATTGTAAACAGCGGCG
GCGAGGTCTTCCTGGAAAAGCATTGGCGCTCGGTTGTCTCGAGATCTGTG
TGCGAATACTTCCTTGACGCCCAGCGCGCTGCTCCATATGATGTGCCGCC
GGTGATAGCCACGCCCCACTACTACCTGATTACAGTGCAAAGGGACACGG
TGTCTTTGGTCGCCGCCTGCAAGCAGGAGGTGCCGCCGCTCTTTGTCATC
GAGTTCCTGCATCGCGTGGTGGACACCTTCCAGGACTATTTCGGCGACTG
CTCCGAGTCCGTGATCAAGGACAACTATGTGGTCGTTTACGAGCTGCTGG
ACGAGATGCTCGATAATGGCTTCCCACTGGCCACCGAGAGCAACATCCTC
AAGGAGCTGATCAAGCCGCCCAATATCCTGCGCACCATTGCCAACACGGT
GACGGGCAAGAGCAATGTAAGCACTACTTTGCCCTCGGGTCAGCTGTCGG
CGGTTCGCTGGCGCAGAAGCGGCGTGAGGTACACCAACAACGAGGCGTAC
TTCGATGTCATCGAGGAGGTGGACGCTATCATTGATAAATCCGGATCCAC
GGTCTTTGCCGAGATCCAGGGACACATCGACTGCTGCATTAAGTTATCCG
GCATGCCAGATCTGACGTTATCTTTCATGAATCCTCGCCTCTTCGACGAC
GTTTCCTTCCATCCTTGCGTGCGCTACAAGCGCTGGGAGGCGGAGCGCCT
GCTCTCCTTTATCCCGCCCGACGGAAACTTCCGCCTGATGTCATATCACA
TTAGCTCTCAGTCCGTGGTGGCCATACCCATCTACATCAGGCACAACTTT
TCGATCAAAACGGGTGAGCAGGGGCGTCTGGACCTCACGATTGGCCCGAG
GAACACCCTTGGTCGCACCGTTGACAAGGTGAAGCTGGAGCTGACCATGC
CGCGGTGTGTGCTTAATTGCCTATTGACGCCGAATCAGGGAAAGTATACC
TTCGATTCGGTGACCAAGACGCTGTCCTGGGATGTGGGACGGATCGATGT
TTCCAAGTTGCCAAATATTAGGGGATCGGTTTCCATTACGCCCGGTACGA
CCAACATCGATGCCAATCCATCCGTGAATGTCCAGTTCCAAATCTCGCAG
CTGGCCGTCTCTGGGCTAAAGGTAAATCGCCTGGACATGTACGGCGAGAA
GTACAAGCCTTTCAAGGGCGTCAAATACCTGACCAAGGCGGGCAAGTTCC
AGGTGCGGATGGCAAGCTTTCTAGACCAT
BO05416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cm-RB | 1248 | CG3035-PB | 1..1245 | 17..1261 | 6225 | 100 | Plus |
| cm-RA | 1248 | CG3035-PA | 1..1245 | 17..1261 | 6225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cm-RB | 1774 | CG3035-RB | 55..1299 | 17..1261 | 6225 | 100 | Plus |
| cm-RA | 1469 | CG3035-RA | 55..1299 | 17..1261 | 6225 | 100 | Plus |
| Inx7-RB | 1690 | CG2977-RB | 1..271 | 983..1253 | 1355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7009772..7010226 | 1080..626 | 2275 | 100 | Minus |
| X | 23542271 | X | 7010519..7010844 | 465..140 | 1630 | 100 | Minus |
| X | 23542271 | X | 7009481..7009664 | 1261..1078 | 920 | 100 | Minus |
| X | 23542271 | X | 7010283..7010442 | 625..466 | 800 | 100 | Minus |
| X | 23542271 | X | 7010899..7010988 | 140..51 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:36:06 has no hits.
BO05416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:03 Download gff for
BO05416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 1..1248 | 17..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:26 Download gff for
BO05416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 37..1289 | 11..1261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:28 Download gff for
BO05416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 55..1299 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:04 Download gff for
BO05416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 37..1289 | 11..1261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:03 Download gff for
BO05416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 55..1299 | 17..1263 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:03 Download gff for
BO05416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7009479..7009663 | 1079..1263 | 98 | <- | Minus |
| X | 7009774..7010226 | 626..1078 | 100 | <- | Minus |
| X | 7010283..7010442 | 466..625 | 100 | <- | Minus |
| X | 7010519..7010844 | 140..465 | 100 | <- | Minus |
| X | 7010900..7010987 | 52..139 | 100 | <- | Minus |
| X | 7011057..7011091 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:28 Download gff for
BO05416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6903512..6903696 | 1079..1263 | 98 | <- | Minus |
| arm_X | 6903807..6904259 | 626..1078 | 100 | <- | Minus |
| arm_X | 6904316..6904475 | 466..625 | 100 | <- | Minus |
| arm_X | 6904552..6904877 | 140..465 | 100 | <- | Minus |
| arm_X | 6904933..6905020 | 52..139 | 100 | <- | Minus |
| arm_X | 6905090..6905124 | 17..51 | 100 | | Minus |
BO05416.pep Sequence
Translation from 16 to 1279
> BO05416.pep
MIHSLFIVNSGGEVFLEKHWRSVVSRSVCEYFLDAQRAAPYDVPPVIATP
HYYLITVQRDTVSLVAACKQEVPPLFVIEFLHRVVDTFQDYFGDCSESVI
KDNYVVVYELLDEMLDNGFPLATESNILKELIKPPNILRTIANTVTGKSN
VSTTLPSGQLSAVRWRRSGVRYTNNEAYFDVIEEVDAIIDKSGSTVFAEI
QGHIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRYKRWEAERLLSFIP
PDGNFRLMSYHISSQSVVAIPIYIRHNFSIKTGEQGRLDLTIGPRNTLGR
TVDKVKLELTMPRCVLNCLLTPNQGKYTFDSVTKTLSWDVGRIDVSKLPN
IRGSVSITPGTTNIDANPSVNVQFQISQLAVSGLKVNRLDMYGEKYKPFK
GVKYLTKAGKFQVRMASFLDH
BO05416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cm-PB | 415 | CG3035-PB | 1..415 | 1..415 | 2163 | 100 | Plus |
| cm-PA | 415 | CG3035-PA | 1..415 | 1..415 | 2163 | 100 | Plus |
| AP-1mu-PA | 426 | CG9388-PA | 5..424 | 4..414 | 450 | 27.4 | Plus |
| AP-2mu-PC | 437 | CG7057-PC | 1..436 | 1..414 | 416 | 27.3 | Plus |
| AP-2mu-PB | 437 | CG7057-PB | 1..436 | 1..414 | 416 | 27.3 | Plus |
