Clone Sequence Records
BO05417.3prime Sequence
872 bp (812 high quality bases) assembled on 2005-12-02
> BO05417.3prime
ATGGTCTAGAAAGCTTGCATCGATGGATACGCTGGATATTTCCATGGAGC
TGTTATCATCCGAGGGCGCCTGCTCGGGCGGATTCGAAGGGCCACCGGAT
GTGCCAGGCGTTTCCTCGGTGGACATTGTGACAGCAGTTGCCGATGGCGT
GGTGGTGGTGCCGCTGGCAGGCGCGGTTAAGCTAGTCCTGCTCGACTGGG
ATCGACGCATGCCCTGAATCAGGTTTCGGTCCGGACGCAAGCTGATCAGG
GAGCTACTCGAGGCGCTCTCCGCAGCTACGGTGGTCGTGGAGGTAGTCGT
GGTGGCTATGGATGTGATGGGAACTCGAACTCGCACATCCTGGAGCTCCC
ACTCCATCTCGTCCTCGGAACTGGTATCTGCATTCGCCACGGCCGTCGAA
GTTTTTACCTTCTTCTGTCCCTCAGCATTGCGCTTCCAGTCAATCGTCTT
CAGCAGCGCCTTTGCCTCCATTTTGCGATCCTCTGAGTCTAGGCATTTGT
AAGCGTAATAGGCGGCTCGTTCGTACTCGCCCTTCTTCTCGTAATAATTG
GCCAGCGTGATGAACCCTTGGTAGAGGCTCTGCTTATCGGTGGCCGCCCG
CTCATCCTCGCAGTACATGATGTAGCAATGGACCGCCGTCTCGTGGTCGC
CGAGCTTCTCGTGCAGATTGGCCAGTTTGTACATCGCTATGCCCTCTATG
TCACCCACATCGATGGCCTTCCAGTAGCACTTCACAGCATTTTCGCACTT
GTCCAGCTTCTCATAGGTCTCGCCCAAGGCAACCAGCATTCGAGAGTCGT
AGGGACGCAGTTGGTGGGCGATTTTAAGTAGTACAGGCTGTAGTAGTGCA
TTTTAATGATCTCGTAGGCCTG
BO05417.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2508-PA | 2037 | cdc23-RA | 1226..2034 | 827..19 | 4045 | 100 | Minus |
| CG2508-PA | 2037 | cdc23-RA | 1180..1226 | 872..826 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-RB | 2184 | CG2508-RB | 1256..2110 | 872..19 | 4250 | 99.9 | Minus |
| Cdc23-RA | 2270 | CG2508-RA | 1256..2110 | 872..19 | 4250 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20461111..20461569 | 477..19 | 2295 | 100 | Minus |
| 2L | 23513712 | 2L | 20460655..20461050 | 872..478 | 1930 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:48:52 has no hits.
BO05417.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:30 Download gff for
BO05417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc23-PA | 1180..2037 | 18..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:56 Download gff for
BO05417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2508-PA | 1180..2037 | 18..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:35 Download gff for
BO05417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 1256..2110 | 19..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:54 Download gff for
BO05417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 1256..2110 | 19..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:54 Download gff for
BO05417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20460655..20461050 | 478..872 | 99 | -> | Minus |
| 2L | 20461111..20461569 | 19..477 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:35 Download gff for
BO05417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20460655..20461050 | 478..872 | 99 | -> | Minus |
| arm_2L | 20461111..20461569 | 19..477 | 100 | | Minus |
BO05417.5prime Sequence
878 bp (834 high quality bases) assembled on 2005-12-02
> BO05417.5prime
GAAGTTATCAGTCGACATGGCGATGCAGAAGTTCTTCAGCGTGCTGCTGC
CGGATGTGAAGCGGGAGCTGCGCCGCGGGATCATCGAGTGCTCCAAGCGG
GGCCTCCTGCACAGCACCAAGTGGCTGGCGGAAATGCATCACGGACTGGC
CGATGTGCACATAGACAATGAGGCGCCTGATGAGGATCGCACATTCAGCG
AGTGTCAGCTGGAGGGGATTGCGCCGGAGGAGTACAGCGACTACTTCCTG
GCCAAGAGCTACTACGACGTGAGGGAGTACGACAGGGCGGCGCATGCGGT
CAGGAACTGCGAGTCCAGTGTTCCGCGCTTCCTGCACTTCTATTCCAGCT
ACATGGCCAGGGAAAAGCGGCGACTGGACTCGACCACGGACCAGGCGAAT
CTGCACGAACCGAATCAGATGCGCGATCTCGCCGACCTGCTGGCTACGTT
GCGCATGGAATACGGCAAAAGTCGGCTCGATGGCTACGGAATATACTTAT
ACGGAGTAGTCCTGAAAGCACTGAATCTCAACCAGGCCGCCGAGCAAATG
CTGGTCCAGGCCATCAGACTGGTACCCATGCTGTGGAGCGCCTATCTGGA
GCTCTCGCCCCTCATCATGGAGAAGAAGAAACTGCTGAGCCTGCAGCTGG
GTGGTCACTGGATGCGGCACTTCTTCATGGCGCACACTTACCTGGAGCTG
TACCTCAACGACGACGGCCTGAAGATCTACGAGGACCTGCAGGCATCGGG
TTTCAGCAAGAGCATCTACTTGATTGCCCAGATGGCTCTGGTCTATCACA
ATAAGCGGGATGTGGACAAGGCGATTGAGCTGTACCAGGCGCTTCTCGAG
AGCGATCCCTACCGCCTGGACAATGTGG
BO05417.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2508-PA | 2037 | cdc23-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG31687-PA | 2148 | CG31687-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-RB | 2184 | CG2508-RB | 77..938 | 17..878 | 4310 | 100 | Plus |
| Cdc23-RA | 2270 | CG2508-RA | 77..938 | 17..878 | 4310 | 100 | Plus |
| CG31687-RB | 3653 | CG31687-RB | 77..941 | 17..878 | 4255 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20459418..20460279 | 17..878 | 4310 | 100 | Plus |
| 2L | 23513712 | 2L | 20450301..20451165 | 17..878 | 4230 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:39:21 has no hits.
BO05417.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:31 Download gff for
BO05417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc23-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:42:57 Download gff for
BO05417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2508-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:43 Download gff for
BO05417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 77..938 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:39 Download gff for
BO05417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 77..938 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:39 Download gff for
BO05417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20459418..20460279 | 17..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:43 Download gff for
BO05417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20459418..20460279 | 17..878 | 100 | | Plus |
BO05417.complete Sequence
2068 bp assembled on 2008-08-14
GenBank Submission: FJ630024
> BO05417.complete
GAAGTTATCAGTCGACATGGCGATGCAGAAGTTCTTCAGCGTGCTGCTGC
CGGATGTGAAGCGGGAGCTGCGCCGCGGGATCATCGAGTGCTCCAAGCGG
GGCCTCCTGCACAGCACCAAGTGGCTGGCGGAAATGCATCACGGACTGGC
CGATGTGCACATAGACAATGAGGCGCCTGATGAGGATCGCACATTCAGCG
AGTGTCAGCTGGAGGGGATTGCGCCGGAGGAGTACAGCGACTACTTCCTG
GCCAAGAGCTACTACGACGTGAGGGAGTACGACAGGGCGGCGCATGCGGT
CAGGAACTGCGAGTCCAGTGTTCCGCGCTTCCTGCACTTCTATTCCAGCT
ACATGGCCAGGGAAAAGCGGCGACTGGACTCGACCACGGACCAGGCGAAT
CTGCACGAACCGAATCAGATGCGCGATCTCGCCGACCTGCTGGCTACGTT
GCGCATGGAATACGGCAAAAGTCGGCTCGATGGCTACGGAATATACTTAT
ACGGAGTAGTCCTGAAAGCACTGAATCTCAACCAGGCCGCCGAGCAAATG
CTGGTCCAGGCCATCAGACTGGTACCCATGCTGTGGAGCGCCTATCTGGA
GCTCTCGCCCCTCATCATGGAGAAGAAGAAACTGCTGAGCCTGCAGCTGG
GTGGTCACTGGATGCGGCACTTCTTCATGGCGCACACTTACCTGGAGCTG
TACCTCAACGACGACGGCCTGAAGATCTACGAGGACCTGCAGGCATCGGG
TTTCAGCAAGAGCATCTACTTGATTGCCCAGATGGCTCTGGTCTATCACA
ATAAGCGGGATGTGGACAAGGCGATTGAGCTGTACCAGGCGCTTCTCGAG
AGCGATCCCTACCGCCTGGACAATGTGGACACCTATTCCAATCTGCTGTT
CGTCAAGGAGATGAAAACCGAAATGGCACAGTTGGCCCACAAGGCTGTCA
GCATCAACAAGTACCGCCCGGAGACGTGTTGTGTAATAGGCAACTACTAC
AGTATCCGCTGTGATCACCAGGTGGCCATTTCCTACTTTCAACGCGCCCT
GAAACTGAATCCCAAGTATCTGGCGGCCTGGACCTTGATGGGACACGAGT
TCATGGAGCTGAAAAACACAAATGCAGCCATACAGAGCTACCGAAAGGCA
GTGGAGGTCAACAAGCGGGACTATCGCGCCTGGTATGGACTGGGCCAGGC
CTACGAGATCATTAAAATGCACTACTACAGCCTGTACTACTTTAAAATCG
CCCACCAACTGCGTCCCTACGACTCTCGAATGCTGGTTGCCTTGGGCGAG
ACCTATGAGAAGCTGGACAAGTGCGAAAATGCTGTGAAGTGCTACTGGAA
GGCCATCGATGTGGGTGACATAGAGGGCATAGCGATGTACAAACTGGCCA
ATCTGCACGAGAAGCTCGGCGACCACGAGACGGCGGTCCATTGCTACATC
ATGTACTGCGAGGATGAGCGGGCGGCCACCGATAAGCAGAGCCTCTACCA
AGGGTTCATCACGCTGGCCAATTATTACGAGAAGAAGGGCGAGTACGAAC
GAGCCGCCTATTACGCTTACAAATGCCTAGACTCAGAGGATCGCAAAATG
GAGGCAAAGGCGCTGCTGAAGACGATTGACTGGAAGCGCAATGCTGAGGG
ACAGAAGAAGGTAAAAACTTCGACGGCCGTGGCGAATGCAGATACCAGTT
CCGAGGACGAGATGGAGTGGGAGCTCCAGGATGTGCGAGTTCGAGTTCCC
ATCACATCCATAGCCACCACGACTACCTCCACGACCACCGTAGCTGCGGA
GAGCGCCTCGAGTAGCTCCCTGATCAGCTTGCGTCCGGACCGAAACCTGA
TTCAGGGCATGCGTCGATCCCAGTCGAGCAGGACTAGCTTAACCGCGCCT
GCCAGCGGCACCACCACCACGCCATCGGCAACTGCTGTCACAATGTCCAC
CGAGGAAACGCCTGGCACATCCGGTGGCCCTTCGAATCCGCCCGAGCAGG
CGCCCTCGGATGATAACAGCTCCATGGAAATATCCAGCGTATCCATCGAT
GCAAGCTTTCTAGACCAT
BO05417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-RB | 2037 | CG2508-PB | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| Cdc23-RA | 2037 | CG2508-PA | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| CG31687-RB | 1056 | CG31687-PB | 1..1055 | 17..1068 | 5180 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-RB | 2184 | CG2508-RB | 77..2110 | 17..2050 | 10170 | 100 | Plus |
| Cdc23-RA | 2270 | CG2508-RA | 77..2110 | 17..2050 | 10170 | 100 | Plus |
| CG31687-RB | 3653 | CG31687-RB | 77..1131 | 17..1068 | 5180 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20459418..20460391 | 17..990 | 4870 | 100 | Plus |
| 2L | 23513712 | 2L | 20450301..20451277 | 17..990 | 4790 | 99.6 | Plus |
| 2L | 23513712 | 2L | 20460447..20461050 | 988..1591 | 3020 | 100 | Plus |
| 2L | 23513712 | 2L | 20461111..20461569 | 1592..2050 | 2295 | 100 | Plus |
| 2L | 23513712 | 2L | 20451333..20451413 | 988..1068 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib2 | 2844 | transib2 TRANSIB2 2844bp | 1337..1404 | 1056..1123 | 115 | 63.2 | Plus |
BO05417.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:47 Download gff for
BO05417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc23-RA | 24..2057 | 17..2050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:45 Download gff for
BO05417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 77..2110 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:47 Download gff for
BO05417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc23-RA | 24..2057 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:52 Download gff for
BO05417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 77..2110 | 17..2052 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:52 Download gff for
BO05417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20459418..20460390 | 17..989 | 100 | -> | Plus |
| 2L | 20460449..20461050 | 990..1591 | 100 | -> | Plus |
| 2L | 20461111..20461569 | 1592..2052 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:45 Download gff for
BO05417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20459418..20460390 | 17..989 | 100 | -> | Plus |
| arm_2L | 20460449..20461050 | 990..1591 | 100 | -> | Plus |
| arm_2L | 20461111..20461569 | 1592..2052 | 99 | | Plus |
BO05417.pep Sequence
Translation from 16 to 2068
> BO05417.pep
MAMQKFFSVLLPDVKRELRRGIIECSKRGLLHSTKWLAEMHHGLADVHID
NEAPDEDRTFSECQLEGIAPEEYSDYFLAKSYYDVREYDRAAHAVRNCES
SVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQMRDLADLLATLRMEYG
KSRLDGYGIYLYGVVLKALNLNQAAEQMLVQAIRLVPMLWSAYLELSPLI
MEKKKLLSLQLGGHWMRHFFMAHTYLELYLNDDGLKIYEDLQASGFSKSI
YLIAQMALVYHNKRDVDKAIELYQALLESDPYRLDNVDTYSNLLFVKEMK
TEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISYFQRALKLNPK
YLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGLGQAYEIIK
MHYYSLYYFKIAHQLRPYDSRMLVALGETYEKLDKCENAVKCYWKAIDVG
DIEGIAMYKLANLHEKLGDHETAVHCYIMYCEDERAATDKQSLYQGFITL
ANYYEKKGEYERAAYYAYKCLDSEDRKMEAKALLKTIDWKRNAEGQKKVK
TSTAVANADTSSEDEMEWELQDVRVRVPITSIATTTTSTTTVAAESASSS
SLISLRPDRNLIQGMRRSQSSRTSLTAPASGTTTTPSATAVTMSTEETPG
TSGGPSNPPEQAPSDDNSSMEISSVSIDASFLDH
BO05417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-PB | 678 | CG2508-PB | 1..678 | 1..678 | 3528 | 100 | Plus |
| Cdc23-PA | 678 | CG2508-PA | 1..678 | 1..678 | 3528 | 100 | Plus |
| CG31687-PB | 351 | CG31687-PB | 1..351 | 1..350 | 1809 | 99.4 | Plus |
| CG31687-PC | 351 | CG31687-PC | 1..351 | 1..350 | 1809 | 99.4 | Plus |
| Cdc27-PB | 900 | CG8610-PB | 576..801 | 249..474 | 282 | 25.9 | Plus |
