Clone Sequence Records
BO05419.3prime Sequence
890 bp (791 high quality bases) assembled on 2005-12-02
> BO05419.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCCATTGAGTATGTCTTCGCGACAGG
CGACGGCCGCCACCAGGGCAGCTCCACGACCGGAACCGTCCTCGGACAGC
ATCAGATCGAAGGTGATGCCCGGCTTGATCAGCTGCGAGATCTTCTCGAC
CATCAGGTTATGGAACTTGGGATGGAAGCGGTACACACTGCCATCGACGC
CCACCGTCACCGTTGGCTCGTCCATTTTGTTGATCAGCGTGGCAATGCCG
GCGGACACCAGGTGGGCAGCCCGTTTCGAGACGCACTCGCAGATGTACCG
CACATTGGCGCAGTCCCCGTCGGTGGCATTGGTCAGACCGAGCTCCTCCA
GCACCAGGCGGCAATTGGTGAAGTTGCCTGGCTCGTCAGCTTCAATTTCG
CTCACATACTTGGTGAAGAACAGTCCGCGGGTGTTTAGCACTTCGGAATC
CTGTCCATTGAAGAGTATACCCGCCTGGGTCATCTTCACCAGCACCAGAC
GCACCAGCTCGCCCATATACATGCCCGATATCATCTTCTCGAACGTCTGC
TTGCCCGGATTGATGCTGTGCACATCGATGTCCCGATCGAATTCGGTGCG
CACAAAGTCCAGTGCGCCATTGTCGCCGAATGCGCCCCATTCCGTGTTGA
TCAGGACGTGCTTCTTGCGCGGATCCTCGGCGGCGAAGAGCTCCGCCTCC
TCCACACGCTCCATATAGCAGGCATTTGCACCGGTGCCGACAATCAGACC
GATCTTGCAGTTGTGATTCTTCCAGGCGCAGCTCATCAGCGTGCCAGTGG
TGTCATTGAGTATGGCACACACATCGATCTGGACATCGCCGCGCCGTGCG
ATGGCATCCTTTAGCAACTGGACAACATCCTCGTTGACGA
BO05419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3001-PA | 1626 | Hex-A-RA | 752..1623 | 890..19 | 4360 | 100 | Minus |
| CG3001-PB | 1347 | Hex-A-RB | 473..1344 | 890..19 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-A-RC | 4139 | CG3001-RC | 1296..2167 | 890..19 | 4360 | 100 | Minus |
| Hex-A-RB | 2512 | CG3001-RB | 1081..1952 | 890..19 | 4360 | 100 | Minus |
| Hex-A-RA | 2512 | CG3001-RA | 1081..1952 | 890..19 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9586970..9587841 | 890..19 | 4360 | 100 | Minus |
| 3R | 32079331 | 3R | 26451694..26451762 | 562..494 | 195 | 85.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:24:26 has no hits.
BO05419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:33 Download gff for
BO05419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-PA | 753..1626 | 18..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:02 Download gff for
BO05419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3001-PB | 474..1347 | 18..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:48 Download gff for
BO05419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 1082..1952 | 19..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:02 Download gff for
BO05419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 1082..1952 | 19..889 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:02 Download gff for
BO05419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9586971..9587841 | 19..889 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:48 Download gff for
BO05419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9481004..9481874 | 19..889 | 100 | | Minus |
BO05419.5prime Sequence
847 bp (846 high quality bases) assembled on 2005-12-02
> BO05419.5prime
GAAGTTATCAGTCGACATGGATCGGGAGCTGAACGGGGCGATGAAGAGCG
TGTCCATAAATAGCGCCCAACTGAATGGTCACAATAACGGTGGCGGGCTA
GATGAAACGGACCGCGTGGGCGTGGCACAGGGGGCGGCACTGAGTGCAAC
AGAGAAAATTACAACAACGACGGCGGCAGCTACAAAATCAGCGACAGCGA
CCACAAATGCAACCACAGCAACAGCCACAACCACAAATCTTACAACTCAC
AGCCCGCAGCAAATTGCACTCTTATCCGCTGCAGAGAAAAGTAAGATGGT
GCACGAGTTATGTCAGCAGCTGCTTCTAACGGACGAACAGGTGCAGGAGC
TGTGCTACCGCATCCTGCACGAGCTGCGCCGCGGCCTGGCCAAGGATACA
CATCCCAAGGCGAATGTCAAGTGCTTCGTAACGTATGTGCAGGATCTGCC
CAATGGCAATGAGCGTGGCAAGTTCTTGGCCTTGGATCTGGGTGGCACCA
ACTTCCGGGTGCTGCTCATCCATCTGCAGGAGAACAACGATTTTCAAATG
GAGTCCCGCATCTATGCCATACCGCAGCACATTATGATTGGATCGGGTAC
ACAGCTATTCGATCACATCGCCGAATGTCTGTCCAACTTTATGGCCGAGC
ACAATGTGTACAAGGAGCGTTTGCCACTCGGTTTCACCTTCTCGTTCCCG
CTGCGCCAATTGGGTCTGACCAAGGGCCTGCTGGAGACCTGGACCAAGGG
CTTCAACTGCGCTGGCGTCGTCAACGAGGATGTTGTCCAGTTGCTAAAGG
ATGCCATCGCACGGCGCGGCGATGTCCAGATCGATGTGTGTGCCATA
BO05419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3001-PA | 1626 | Hex-A-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
| CG3001-PB | 1347 | Hex-A-RB | 1..552 | 296..847 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-A-RC | 4139 | CG3001-RC | 545..1375 | 17..847 | 4155 | 100 | Plus |
| Hex-A-RB | 2512 | CG3001-RB | 330..1160 | 17..847 | 4155 | 100 | Plus |
| Hex-A-RA | 2512 | CG3001-RA | 330..1160 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9586219..9587049 | 17..847 | 4155 | 100 | Plus |
| 3R | 32079331 | 3R | 26450890..26451020 | 383..513 | 250 | 79.4 | Plus |
| 2R | 25286936 | 2R | 15220031..15220147 | 517..401 | 210 | 78.6 | Minus |
Blast to na_te.dros performed 2015-02-13 05:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2575 | 132..415 | 191 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2654 | 162..352 | 176 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2494 | 147..235 | 168 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1589 | 156..233 | 156 | 66.7 | Plus |
BO05419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:34 Download gff for
BO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:03 Download gff for
BO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3001-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:45 Download gff for
BO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 330..1159 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:42 Download gff for
BO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 330..1159 | 17..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:42 Download gff for
BO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9586219..9587048 | 17..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:45 Download gff for
BO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9480252..9481081 | 17..846 | 100 | | Plus |
BO05419.complete Sequence
1657 bp (1657 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630025
> BO05419.complete
GAAGTTATCAGTCGACATGGATCGGGAGCTGAACGGGGCGATGAAGAGCG
TGTCCATAAATAGCGCCCAACTGAATGGTCACAATAACGGTGGCGGGCTA
GATGAAACGGACCGCGTGGGCGTGGCACAGGGGGCGGCACTGAGTGCAAC
AGAGAAAATTACAACAACGACGGCGGCAGCTACAAAATCAGCGACAGCGA
CCACAAATGCAACCACAGCAACAGCCACAACCACAAATCTTACAACTCAC
AGCCCGCAGCAAATTGCACTCTTATCCGCTGCAGAGAAAAGTAAGATGGT
GCACGAGTTATGTCAGCAGCTGCTTCTAACGGACGAACAGGTGCAGGAGC
TGTGCTACCGCATCCTGCACGAGCTGCGCCGCGGCCTGGCCAAGGATACA
CATCCCAAGGCGAATGTCAAGTGCTTCGTAACGTATGTGCAGGATCTGCC
CAATGGCAATGAGCGTGGCAAGTTCTTGGCCTTGGATCTGGGTGGCACCA
ACTTCCGGGTGCTGCTCATCCATCTGCAGGAGAACAACGATTTTCAAATG
GAGTCCCGCATCTATGCCATACCGCAGCACATTATGATTGGATCGGGTAC
ACAGCTATTCGATCACATCGCCGAATGTCTGTCCAACTTTATGGCCGAGC
ACAATGTGTACAAGGAGCGTTTGCCACTCGGTTTCACCTTCTCGTTCCCG
CTGCGCCAATTGGGTCTGACCAAGGGCCTGCTGGAGACCTGGACCAAGGG
CTTCAACTGCGCTGGCGTCGTCAACGAGGATGTTGTCCAGTTGCTAAAGG
ATGCCATCGCACGGCGCGGCGATGTCCAGATCGATGTGTGTGCCATACTC
AATGACACCACTGGCACGCTGATGAGCTGCGCCTGGAAGAATCACAACTG
CAAGATCGGTCTGATTGTCGGCACCGGTGCAAATGCCTGCTATATGGAGC
GTGTGGAGGAGGCGGAGCTCTTCGCCGCCGAGGATCCGCGCAAGAAGCAC
GTCCTGATCAACACGGAATGGGGCGCATTCGGCGACAATGGCGCACTGGA
CTTTGTGCGCACCGAATTCGATCGGGACATCGATGTGCACAGCATCAATC
CGGGCAAGCAGACGTTCGAGAAGATGATATCGGGCATGTATATGGGCGAG
CTGGTGCGTCTGGTGCTGGTGAAGATGACCCAGGCGGGTATACTCTTCAA
TGGACAGGATTCCGAAGTGCTAAACACCCGCGGACTGTTCTTCACCAAGT
ATGTGAGCGAAATTGAAGCTGACGAGCCAGGCAACTTCACCAATTGCCGC
CTGGTGCTGGAGGAGCTCGGTCTGACCAATGCCACCGACGGGGACTGCGC
CAATGTGCGGTACATCTGCGAGTGCGTCTCGAAACGGGCTGCCCACCTGG
TGTCCGCCGGCATTGCCACGCTGATCAACAAAATGGACGAGCCAACGGTG
ACGGTGGGCGTCGATGGCAGTGTGTACCGCTTCCATCCCAAGTTCCATAA
CCTGATGGTCGAGAAGATCTCGCAGCTGATCAAGCCGGGCATCACCTTCG
ATCTGATGCTGTCCGAGGACGGTTCCGGTCGTGGAGCTGCCCTGGTGGCG
GCCGTCGCCTGTCGCGAAGACATACTCAATGGCAAGAAGGCAAGCTTTCT
AGACCAT
BO05419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-A-RA | 1626 | CG3001-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
| Hex-A-RC | 1347 | CG3001-PC | 1..1344 | 296..1639 | 6720 | 100 | Plus |
| Hex-A-RB | 1347 | CG3001-PB | 1..1344 | 296..1639 | 6720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-A-RC | 4139 | CG3001-RC | 545..2167 | 17..1639 | 8115 | 100 | Plus |
| Hex-A-RB | 2512 | CG3001-RB | 330..1952 | 17..1639 | 8115 | 100 | Plus |
| Hex-A-RA | 2512 | CG3001-RA | 330..1952 | 17..1639 | 8115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9586219..9587841 | 17..1639 | 8115 | 100 | Plus |
| 3R | 32079331 | 3R | 26450890..26451020 | 383..513 | 250 | 79.4 | Plus |
| 2R | 25286936 | 2R | 15220031..15220147 | 517..401 | 210 | 78.6 | Minus |
| 3R | 32079331 | 3R | 26451694..26451762 | 1096..1164 | 195 | 85.5 | Plus |
Blast to na_te.dros performed 2014-11-27 16:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2575 | 132..415 | 191 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2654 | 162..352 | 176 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2494 | 147..235 | 168 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1589 | 156..233 | 156 | 66.7 | Plus |
BO05419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:07 Download gff for
BO05419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 1..1626 | 17..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:29 Download gff for
BO05419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RB | 335..1957 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:59 Download gff for
BO05419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 330..1952 | 17..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:07 Download gff for
BO05419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RB | 335..1957 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:31 Download gff for
BO05419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 330..1952 | 17..1641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:31 Download gff for
BO05419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9586219..9587841 | 17..1641 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:59 Download gff for
BO05419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9480252..9481874 | 17..1641 | 99 | | Plus |
BO05419.pep Sequence
Translation from 16 to 1657
> BO05419.pep
MDRELNGAMKSVSINSAQLNGHNNGGGLDETDRVGVAQGAALSATEKITT
TTAAATKSATATTNATTATATTTNLTTHSPQQIALLSAAEKSKMVHELCQ
QLLLTDEQVQELCYRILHELRRGLAKDTHPKANVKCFVTYVQDLPNGNER
GKFLALDLGGTNFRVLLIHLQENNDFQMESRIYAIPQHIMIGSGTQLFDH
IAECLSNFMAEHNVYKERLPLGFTFSFPLRQLGLTKGLLETWTKGFNCAG
VVNEDVVQLLKDAIARRGDVQIDVCAILNDTTGTLMSCAWKNHNCKIGLI
VGTGANACYMERVEEAELFAAEDPRKKHVLINTEWGAFGDNGALDFVRTE
FDRDIDVHSINPGKQTFEKMISGMYMGELVRLVLVKMTQAGILFNGQDSE
VLNTRGLFFTKYVSEIEADEPGNFTNCRLVLEELGLTNATDGDCANVRYI
CECVSKRAAHLVSAGIATLINKMDEPTVTVGVDGSVYRFHPKFHNLMVEK
ISQLIKPGITFDLMLSEDGSGRGAALVAAVACREDILNGKKASFLDH
BO05419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-A-PA | 541 | CG3001-PA | 1..541 | 1..541 | 2801 | 100 | Plus |
| Hex-A-PC | 448 | CG3001-PC | 1..448 | 94..541 | 2349 | 100 | Plus |
| Hex-A-PB | 448 | CG3001-PB | 1..448 | 94..541 | 2349 | 100 | Plus |
| Hex-t2-PA | 486 | CG32849-PA | 50..479 | 103..531 | 1283 | 56.5 | Plus |
| Hex-C-PA | 454 | CG8094-PA | 6..452 | 95..533 | 1243 | 54.4 | Plus |
