Clone BO05420 Report

Search the DGRC for BO05420

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptusp-RA
Protein status:BO05420.pep: full length peptide match
Sequenced Size:1558

Clone Sequence Records

BO05420.3prime Sequence

885 bp (884 high quality bases) assembled on 2005-12-02

> BO05420.3prime
ATGGTCTAGAAAGCTTGCCTCCAGTTTCATCGCCAGGCCGGGTGGCGGCG
GCGCCTCCAGCTGCTCGAGAAAGAGCTCCTCCAGCGGCCGGTCGCTGGTA
ATGCGGAAGAGGAACAGGTGATCCTGGCACTTCAGGCTGATCGATCGCAA
AGCGGGCAGACGCAGCAGCAGTTGCGCAAAGCGTCCATCGTCGCCCGGAT
GTTCCAGGCGGCAGTGCTCGTCCAGGCAAGCGTACACCTTCTCGCGGCAC
ATCTCGATCTCCGCCCGGCTCTTGATCCCGCGTATGTCCGGGTTGTACAG
TATGATGGCCTTCAAGCAGGACAGCTCGCGTCGGTCGAGATTCAGCCGCT
TCATCTTTACACTCAGCTCCGACAATATGCGGTCGAAGATGGCTGACACA
CCGGCTTTGATCGCACTGTTGCGATGGTACGAGAAGCTCTGGTTGAGGAA
CAGCTGCTGGGGCTGAAGGCCCGGTGATCGTCGCTCAAAGGAGCCATCGT
GGCCTAGTCCACCGCCCCCGCCGCCGGCACCGCCGTCATCCAGCGAAACG
ATGCTGCACCAGGCCACGTTCGCAATGAGCAGCTCGATCCAAGCGGCTTT
CAGCAGAATCACCTGGTCGTCCAGCGGCACCTGGGCAAAGTGCGGCATCA
TGCGCGCGTATTCGACCATCTGGAAGAGCTGTTTGTTGACCACTTGGCAC
AGGGCCGACACGGCACCCTTGTAGTCCGGCTGGACTGTGGAATAGGGACC
AACGCGCAGGAACGTCAGTGCACGATCGCCGCATTGGGTCTCCGCTCGCT
GCTCGGCCTCTATGATGCGCTCGATCGAGAAATCCCTGGACACGCTATTG
GTCATGAAGTCATCGGAACCGTTGCCGCTGCCCAT

BO05420.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4380-PA 1527 usp-RA 658..1524 885..19 4310 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
usp-RB 3038 CG4380-RB 1580..2446 885..19 4320 99.9 Minus
usp-RA 2515 CG4380-RA 1057..1923 885..19 4320 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2039390..2040256 19..885 4320 99.9 Plus
Blast to na_te.dros performed on 2015-02-13 01:51:36 has no hits.

BO05420.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:35 Download gff for BO05420.3prime
Subject Subject Range Query Range Percent Splice Strand
usp-PA 658..1527 18..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:05 Download gff for BO05420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4380-PA 658..1527 18..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:10:12 Download gff for BO05420.3prime
Subject Subject Range Query Range Percent Splice Strand
usp-RA 1057..1923 19..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:26 Download gff for BO05420.3prime
Subject Subject Range Query Range Percent Splice Strand
usp-RA 1057..1923 19..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:26 Download gff for BO05420.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2039390..2040256 19..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:10:12 Download gff for BO05420.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1933423..1934289 19..885 99   Plus

BO05420.5prime Sequence

924 bp (836 high quality bases) assembled on 2005-12-02

> BO05420.5prime
GAAGTTATCAGTCGACATGGACAACTGCGACCAGGACGCCAGCTTTCGGC
TGAGCCACATCAAGGAGGAGGTCAAGCCGGACATCTCGCAGCTGAACGAC
AGCAACAACAGCAGCTTTTCGCCCAAGGCCGAGAGTCCCGTGCCCTTCAT
GCAGGCCATGTCCATGGTCCACGTGCTGCCCGGCTCCAACTCCGCCAGCT
CCAACAACAACAGCGCTGGAGATGCCCAAATGGCGCAGGCGCCCAATTCG
GCTGGAGGCTCTGCCGCCGCTGCAGTCCAGCAGCAGTATCCGCCTAACCA
TCCGCTGAGCGGCAGCAAGCACCTCTGCTCTATTTGCGGGGATCGGGCCA
GTGGCAAGCACTACGGCGTGTACAGCTGTGAGGGCTGCAAGGGCTTCTTT
AAACGCACAGTGCGCAAGGATCTCACATACGCTTGCAGGGAGAACCGCAA
CTGCATCATAGACAAGCGGCAGAGGAACCGCTGCCAGTACTGCCGCTACC
AGAAGTGCCTAACCTGCGGCATGAAGCGCGAAGCGGTCCAGGAGGAGCGT
CAACGCGGCGCCCGCAATGCGGCGGGTAGGCTCAGCGCCAGCGGAGGCGG
CAGTAGCGGTCCAGGTTCGGTAGGCGGATCCAGCTCTCAAGGCGGAGGAG
GAGGAGGCGGCGTTTCTGGCGGAATGGGCAGCGGCAACGGTTCCGATGAC
TTCATGACCAATAGCGTGTCCAGNGATTTCTCGATCGAGCGCATCATAGA
GGCCGAGCAGCGAGCGGAGACCCAATGCGGCGATCGTGCACTGACGTTCC
TGCGCGTTGGTCCCTATTCCACAGTCCAGCCGGACTACAAGGGTGCCGTG
TCGGCCCTGTGCCAAGTGGTCAACAAACAGCTCTTCCAGATGGTCGAATA
CGCGCGCATGATGCCGCACTTTGC

BO05420.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4380-PA 1527 usp-RA 1..908 17..924 4496 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
usp-RB 3038 CG4380-RB 923..1830 17..924 4514 99.8 Plus
usp-RA 2515 CG4380-RA 400..1307 17..924 4514 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2040006..2040913 924..17 4514 99.8 Minus
Blast to na_te.dros performed 2015-02-12 10:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
F-element 4708 F-element F 4708bp 399..441 180..224 112 75.6 Plus

BO05420.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:36 Download gff for BO05420.5prime
Subject Subject Range Query Range Percent Splice Strand
usp-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:06 Download gff for BO05420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4380-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:33 Download gff for BO05420.5prime
Subject Subject Range Query Range Percent Splice Strand
usp-RA 396..1307 9..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:53 Download gff for BO05420.5prime
Subject Subject Range Query Range Percent Splice Strand
usp-RA 396..1307 9..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:53 Download gff for BO05420.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2040006..2040917 9..924 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:33 Download gff for BO05420.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1934039..1934950 9..924 99   Minus

BO05420.complete Sequence

1558 bp (1558 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630026

> BO05420.complete
GAAGTTATCAGTCGACATGGACAACTGCGACCAGGACGCCAGCTTTCGGC
TGAGCCACATCAAGGAGGAGGTCAAGCCGGACATCTCGCAGCTGAACGAC
AGCAACAACAGCAGCTTTTCGCCCAAGGCCGAGAGTCCCGTGCCCTTCAT
GCAGGCCATGTCCATGGTCCACGTGCTGCCCGGCTCCAACTCCGCCAGCT
CCAACAACAACAGCGCTGGAGATGCCCAAATGGCGCAGGCGCCCAATTCG
GCTGGAGGCTCTGCCGCCGCTGCAGTCCAGCAGCAGTATCCGCCTAACCA
TCCGCTGAGCGGCAGCAAGCACCTCTGCTCTATTTGCGGGGATCGGGCCA
GTGGCAAGCACTACGGCGTGTACAGCTGTGAGGGCTGCAAGGGCTTCTTT
AAACGCACAGTGCGCAAGGATCTCACATACGCTTGCAGGGAGAACCGCAA
CTGCATCATAGACAAGCGGCAGAGGAACCGCTGCCAGTACTGCCGCTACC
AGAAGTGCCTAACCTGCGGCATGAAGCGCGAAGCGGTCCAGGAGGAGCGT
CAACGCGGCGCCCGCAATGCGGCGGGTAGGCTCAGCGCCAGCGGAGGCGG
CAGTAGCGGTCCAGGTTCGGTAGGCGGATCCAGCTCTCAAGGCGGAGGAG
GAGGAGGCGGCGTTTCTGGCGGAATGGGCAGCGGCAACGGTTCCGATGAC
TTCATGACCAATAGCGTGTCCAGGGATTTCTCGATCGAGCGCATCATAGA
GGCCGAGCAGCGAGCGGAGACCCAATGCGGCGATCGTGCACTGACGTTCC
TGCGCGTTGGTCCCTATTCCACAGTCCAGCCGGACTACAAGGGTGCCGTG
TCGGCCCTGTGCCAAGTGGTCAACAAACAGCTCTTCCAGATGGTCGAATA
CGCGCGCATGATGCCGCACTTTGCCCAGGTGCCGCTGGACGACCAGGTGA
TTCTGCTGAAAGCCGCTTGGATCGAGCTGCTCATTGCGAACGTGGCCTGG
TGCAGCATCGTTTCGCTGGATGACGGCGGTGCCGGCGGCGGGGGCGGTGG
ACTAGGCCACGATGGCTCCTTTGAGCGACGATCACCGGGCCTTCAGCCCC
AGCAGCTGTTCCTCAACCAGAGCTTCTCGTACCATCGCAACAGTGCGATC
AAAGCCGGTGTGTCAGCCATCTTCGACCGCATATTGTCGGAGCTGAGTGT
AAAGATGAAGCGGCTGAATCTCGACCGACGCGAGCTGTCCTGCTTGAAGG
CCATCATACTGTACAACCCGGACATACGCGGGATCAAGAGCCGGGCGGAG
ATCGAGATGTGCCGCGAGAAGGTGTACGCTTGCCTGGACGAGCACTGCCG
CCTGGAACATCCGGGCGACGATGGACGCTTTGCGCAACTGCTGCTGCGTC
TGCCCGCTTTGCGATCGATCAGCCTGAAGTGCCAGGATCACCTGTTCCTC
TTCCGCATTACCAGCGACCGGCCGCTGGAGGAGCTCTTTCTCGAGCAGCT
GGAGGCGCCGCCGCCACCCGGCCTGGCGATGAAACTGGAGGCAAGCTTTC
TAGACCAT

BO05420.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
usp-RB 1527 CG4380-PB 1..1524 17..1540 7605 99.9 Plus
usp-RA 1527 CG4380-PA 1..1524 17..1540 7605 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
usp-RB 3038 CG4380-RB 923..2446 17..1540 7605 99.9 Plus
usp-RA 2515 CG4380-RA 400..1923 17..1540 7605 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2039390..2040913 1540..17 7605 99.9 Minus
Blast to na_te.dros performed 2014-11-27 01:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
F-element 4708 F-element F 4708bp 399..441 180..224 112 75.6 Plus

BO05420.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:53 Download gff for BO05420.complete
Subject Subject Range Query Range Percent Splice Strand
usp-RA 1..1527 17..1541 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:13 Download gff for BO05420.complete
Subject Subject Range Query Range Percent Splice Strand
usp-RA 367..1894 9..1540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:23 Download gff for BO05420.complete
Subject Subject Range Query Range Percent Splice Strand
usp-RA 400..1923 17..1542 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:53 Download gff for BO05420.complete
Subject Subject Range Query Range Percent Splice Strand
usp-RA 367..1894 9..1540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:29 Download gff for BO05420.complete
Subject Subject Range Query Range Percent Splice Strand
usp-RA 400..1923 17..1542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:29 Download gff for BO05420.complete
Subject Subject Range Query Range Percent Splice Strand
X 2039388..2040913 17..1542 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:23 Download gff for BO05420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1933421..1934946 17..1542 99   Minus

BO05420.pep Sequence

Translation from 16 to 1558

> BO05420.pep
MDNCDQDASFRLSHIKEEVKPDISQLNDSNNSSFSPKAESPVPFMQAMSM
VHVLPGSNSASSNNNSAGDAQMAQAPNSAGGSAAAAVQQQYPPNHPLSGS
KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK
RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPG
SVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRA
ETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMP
HFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDG
SFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRL
NLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG
DDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPPP
PGLAMKLEASFLDH

BO05420.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
usp-PB 508 CG4380-PB 1..508 1..508 2666 100 Plus
usp-PA 508 CG4380-PA 1..508 1..508 2666 100 Plus
Hnf4-PF 666 CG9310-PF 59..429 56..495 468 28.8 Plus
Hnf4-PE 704 CG9310-PE 97..467 56..495 468 28.8 Plus
Hnf4-PA 704 CG9310-PA 97..467 56..495 468 28.8 Plus