Clone Sequence Records
BO05420.3prime Sequence
885 bp (884 high quality bases) assembled on 2005-12-02
> BO05420.3prime
ATGGTCTAGAAAGCTTGCCTCCAGTTTCATCGCCAGGCCGGGTGGCGGCG
GCGCCTCCAGCTGCTCGAGAAAGAGCTCCTCCAGCGGCCGGTCGCTGGTA
ATGCGGAAGAGGAACAGGTGATCCTGGCACTTCAGGCTGATCGATCGCAA
AGCGGGCAGACGCAGCAGCAGTTGCGCAAAGCGTCCATCGTCGCCCGGAT
GTTCCAGGCGGCAGTGCTCGTCCAGGCAAGCGTACACCTTCTCGCGGCAC
ATCTCGATCTCCGCCCGGCTCTTGATCCCGCGTATGTCCGGGTTGTACAG
TATGATGGCCTTCAAGCAGGACAGCTCGCGTCGGTCGAGATTCAGCCGCT
TCATCTTTACACTCAGCTCCGACAATATGCGGTCGAAGATGGCTGACACA
CCGGCTTTGATCGCACTGTTGCGATGGTACGAGAAGCTCTGGTTGAGGAA
CAGCTGCTGGGGCTGAAGGCCCGGTGATCGTCGCTCAAAGGAGCCATCGT
GGCCTAGTCCACCGCCCCCGCCGCCGGCACCGCCGTCATCCAGCGAAACG
ATGCTGCACCAGGCCACGTTCGCAATGAGCAGCTCGATCCAAGCGGCTTT
CAGCAGAATCACCTGGTCGTCCAGCGGCACCTGGGCAAAGTGCGGCATCA
TGCGCGCGTATTCGACCATCTGGAAGAGCTGTTTGTTGACCACTTGGCAC
AGGGCCGACACGGCACCCTTGTAGTCCGGCTGGACTGTGGAATAGGGACC
AACGCGCAGGAACGTCAGTGCACGATCGCCGCATTGGGTCTCCGCTCGCT
GCTCGGCCTCTATGATGCGCTCGATCGAGAAATCCCTGGACACGCTATTG
GTCATGAAGTCATCGGAACCGTTGCCGCTGCCCAT
BO05420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4380-PA | 1527 | usp-RA | 658..1524 | 885..19 | 4310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
usp-RB | 3038 | CG4380-RB | 1580..2446 | 885..19 | 4320 | 99.9 | Minus |
usp-RA | 2515 | CG4380-RA | 1057..1923 | 885..19 | 4320 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2039390..2040256 | 19..885 | 4320 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:51:36 has no hits.
BO05420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:35 Download gff for
BO05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-PA | 658..1527 | 18..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:05 Download gff for
BO05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4380-PA | 658..1527 | 18..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:10:12 Download gff for
BO05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-RA | 1057..1923 | 19..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:26 Download gff for
BO05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-RA | 1057..1923 | 19..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:26 Download gff for
BO05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2039390..2040256 | 19..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:10:12 Download gff for
BO05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1933423..1934289 | 19..885 | 99 | | Plus |
BO05420.5prime Sequence
924 bp (836 high quality bases) assembled on 2005-12-02
> BO05420.5prime
GAAGTTATCAGTCGACATGGACAACTGCGACCAGGACGCCAGCTTTCGGC
TGAGCCACATCAAGGAGGAGGTCAAGCCGGACATCTCGCAGCTGAACGAC
AGCAACAACAGCAGCTTTTCGCCCAAGGCCGAGAGTCCCGTGCCCTTCAT
GCAGGCCATGTCCATGGTCCACGTGCTGCCCGGCTCCAACTCCGCCAGCT
CCAACAACAACAGCGCTGGAGATGCCCAAATGGCGCAGGCGCCCAATTCG
GCTGGAGGCTCTGCCGCCGCTGCAGTCCAGCAGCAGTATCCGCCTAACCA
TCCGCTGAGCGGCAGCAAGCACCTCTGCTCTATTTGCGGGGATCGGGCCA
GTGGCAAGCACTACGGCGTGTACAGCTGTGAGGGCTGCAAGGGCTTCTTT
AAACGCACAGTGCGCAAGGATCTCACATACGCTTGCAGGGAGAACCGCAA
CTGCATCATAGACAAGCGGCAGAGGAACCGCTGCCAGTACTGCCGCTACC
AGAAGTGCCTAACCTGCGGCATGAAGCGCGAAGCGGTCCAGGAGGAGCGT
CAACGCGGCGCCCGCAATGCGGCGGGTAGGCTCAGCGCCAGCGGAGGCGG
CAGTAGCGGTCCAGGTTCGGTAGGCGGATCCAGCTCTCAAGGCGGAGGAG
GAGGAGGCGGCGTTTCTGGCGGAATGGGCAGCGGCAACGGTTCCGATGAC
TTCATGACCAATAGCGTGTCCAGNGATTTCTCGATCGAGCGCATCATAGA
GGCCGAGCAGCGAGCGGAGACCCAATGCGGCGATCGTGCACTGACGTTCC
TGCGCGTTGGTCCCTATTCCACAGTCCAGCCGGACTACAAGGGTGCCGTG
TCGGCCCTGTGCCAAGTGGTCAACAAACAGCTCTTCCAGATGGTCGAATA
CGCGCGCATGATGCCGCACTTTGC
BO05420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4380-PA | 1527 | usp-RA | 1..908 | 17..924 | 4496 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
usp-RB | 3038 | CG4380-RB | 923..1830 | 17..924 | 4514 | 99.8 | Plus |
usp-RA | 2515 | CG4380-RA | 400..1307 | 17..924 | 4514 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2040006..2040913 | 924..17 | 4514 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-12 10:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
F-element | 4708 | F-element F 4708bp | 399..441 | 180..224 | 112 | 75.6 | Plus |
BO05420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:36 Download gff for
BO05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:06 Download gff for
BO05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4380-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:33 Download gff for
BO05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-RA | 396..1307 | 9..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:53 Download gff for
BO05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-RA | 396..1307 | 9..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:53 Download gff for
BO05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2040006..2040917 | 9..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:33 Download gff for
BO05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1934039..1934950 | 9..924 | 99 | | Minus |
BO05420.complete Sequence
1558 bp (1558 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630026
> BO05420.complete
GAAGTTATCAGTCGACATGGACAACTGCGACCAGGACGCCAGCTTTCGGC
TGAGCCACATCAAGGAGGAGGTCAAGCCGGACATCTCGCAGCTGAACGAC
AGCAACAACAGCAGCTTTTCGCCCAAGGCCGAGAGTCCCGTGCCCTTCAT
GCAGGCCATGTCCATGGTCCACGTGCTGCCCGGCTCCAACTCCGCCAGCT
CCAACAACAACAGCGCTGGAGATGCCCAAATGGCGCAGGCGCCCAATTCG
GCTGGAGGCTCTGCCGCCGCTGCAGTCCAGCAGCAGTATCCGCCTAACCA
TCCGCTGAGCGGCAGCAAGCACCTCTGCTCTATTTGCGGGGATCGGGCCA
GTGGCAAGCACTACGGCGTGTACAGCTGTGAGGGCTGCAAGGGCTTCTTT
AAACGCACAGTGCGCAAGGATCTCACATACGCTTGCAGGGAGAACCGCAA
CTGCATCATAGACAAGCGGCAGAGGAACCGCTGCCAGTACTGCCGCTACC
AGAAGTGCCTAACCTGCGGCATGAAGCGCGAAGCGGTCCAGGAGGAGCGT
CAACGCGGCGCCCGCAATGCGGCGGGTAGGCTCAGCGCCAGCGGAGGCGG
CAGTAGCGGTCCAGGTTCGGTAGGCGGATCCAGCTCTCAAGGCGGAGGAG
GAGGAGGCGGCGTTTCTGGCGGAATGGGCAGCGGCAACGGTTCCGATGAC
TTCATGACCAATAGCGTGTCCAGGGATTTCTCGATCGAGCGCATCATAGA
GGCCGAGCAGCGAGCGGAGACCCAATGCGGCGATCGTGCACTGACGTTCC
TGCGCGTTGGTCCCTATTCCACAGTCCAGCCGGACTACAAGGGTGCCGTG
TCGGCCCTGTGCCAAGTGGTCAACAAACAGCTCTTCCAGATGGTCGAATA
CGCGCGCATGATGCCGCACTTTGCCCAGGTGCCGCTGGACGACCAGGTGA
TTCTGCTGAAAGCCGCTTGGATCGAGCTGCTCATTGCGAACGTGGCCTGG
TGCAGCATCGTTTCGCTGGATGACGGCGGTGCCGGCGGCGGGGGCGGTGG
ACTAGGCCACGATGGCTCCTTTGAGCGACGATCACCGGGCCTTCAGCCCC
AGCAGCTGTTCCTCAACCAGAGCTTCTCGTACCATCGCAACAGTGCGATC
AAAGCCGGTGTGTCAGCCATCTTCGACCGCATATTGTCGGAGCTGAGTGT
AAAGATGAAGCGGCTGAATCTCGACCGACGCGAGCTGTCCTGCTTGAAGG
CCATCATACTGTACAACCCGGACATACGCGGGATCAAGAGCCGGGCGGAG
ATCGAGATGTGCCGCGAGAAGGTGTACGCTTGCCTGGACGAGCACTGCCG
CCTGGAACATCCGGGCGACGATGGACGCTTTGCGCAACTGCTGCTGCGTC
TGCCCGCTTTGCGATCGATCAGCCTGAAGTGCCAGGATCACCTGTTCCTC
TTCCGCATTACCAGCGACCGGCCGCTGGAGGAGCTCTTTCTCGAGCAGCT
GGAGGCGCCGCCGCCACCCGGCCTGGCGATGAAACTGGAGGCAAGCTTTC
TAGACCAT
BO05420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
usp-RB | 1527 | CG4380-PB | 1..1524 | 17..1540 | 7605 | 99.9 | Plus |
usp-RA | 1527 | CG4380-PA | 1..1524 | 17..1540 | 7605 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
usp-RB | 3038 | CG4380-RB | 923..2446 | 17..1540 | 7605 | 99.9 | Plus |
usp-RA | 2515 | CG4380-RA | 400..1923 | 17..1540 | 7605 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2039390..2040913 | 1540..17 | 7605 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-27 01:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
F-element | 4708 | F-element F 4708bp | 399..441 | 180..224 | 112 | 75.6 | Plus |
BO05420.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:53 Download gff for
BO05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-RA | 1..1527 | 17..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:13 Download gff for
BO05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-RA | 367..1894 | 9..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:23 Download gff for
BO05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-RA | 400..1923 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:53 Download gff for
BO05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-RA | 367..1894 | 9..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:29 Download gff for
BO05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
usp-RA | 400..1923 | 17..1542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:29 Download gff for
BO05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2039388..2040913 | 17..1542 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:23 Download gff for
BO05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1933421..1934946 | 17..1542 | 99 | | Minus |
BO05420.pep Sequence
Translation from 16 to 1558
> BO05420.pep
MDNCDQDASFRLSHIKEEVKPDISQLNDSNNSSFSPKAESPVPFMQAMSM
VHVLPGSNSASSNNNSAGDAQMAQAPNSAGGSAAAAVQQQYPPNHPLSGS
KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK
RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPG
SVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRA
ETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMP
HFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDG
SFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRL
NLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG
DDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPPP
PGLAMKLEASFLDH
BO05420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
usp-PB | 508 | CG4380-PB | 1..508 | 1..508 | 2666 | 100 | Plus |
usp-PA | 508 | CG4380-PA | 1..508 | 1..508 | 2666 | 100 | Plus |
Hnf4-PF | 666 | CG9310-PF | 59..429 | 56..495 | 468 | 28.8 | Plus |
Hnf4-PE | 704 | CG9310-PE | 97..467 | 56..495 | 468 | 28.8 | Plus |
Hnf4-PA | 704 | CG9310-PA | 97..467 | 56..495 | 468 | 28.8 | Plus |