Clone Sequence Records
BO05423.3prime Sequence
873 bp (727 high quality bases) assembled on 2005-12-02
> BO05423.3prime
ATGGTCTAGAAAGCTTGCAAGCAGCTCGTAACCACTGATCAAATGCTCAT
CAAGTCGCAACATAGTCTTCAGTCGGCTCACACATCCCTGCAGCAGGCCC
AGAAGAACGCCCAGGACCTTGTTAGGGCGCTCAGGTGACTGGGGTATAGT
TTCGTCCTCGTCGGAGGAGCTTTTCGCAGGTTTAGGTTGTTGAGAGTCGT
CTGTGTTGATAAAGCAAACCTCCGTGCTGTTCGGCGGCTCTGGAGCAGGT
GCCATGCTGGCCTCCAAAGCGGCATCCGCGGCTGCCAGCATGAGAGCCTC
TTGTTCCGCCTCATCTTCAATCAGAACCACAGTGTCCACCTCGGCTAGGA
TGCGAGGGTGCTGAACAGATGGCGCCTCCGAGTCCCGGAACTGAAACAGT
GGATTATCTAGGCTCGATTCTAATTGGGTCTCCTCAACTCGCCGTTTTGG
CTGCACTGCAGCCGGTTCCGAAGAGCTGCCTTTGCGTTTGTTGGTCACAT
TCGGCTTCGAAACGCTGCTCTTTCGCTTTGCGGCCGCCGCTCGTACATCC
TCATCCTGCACTGTCAGATCCTTTTGACAATAATCTTCCGAGAAGCTTAT
ATCATCGGGGGATAGCGTGGACATGATCAGCAAGCATTCAATCTCGCCAT
GCTTCTTAATTTTGAGCAGGAAAGGCATGCCCGCTTCGTCGAACTCCAGG
GTCAGCGAAGCATTTAAGCACTCGGCGAAGAGGAGAAATGCTCGGAATTC
CTTAATGCAGAATGTAATGACCGTCTCCTTCGTTACCTGGTACTGCTCAA
ATTCACTGGGCTTAAGTTTCAGCTGCGTGCGCATGAACTTATCATTAACT
CGGGCTCCTTCTATGTAGTTTTT
BO05423.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3945-PA | 1371 | Rad9-RA | 514..1368 | 873..19 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-RA | 1779 | CG3945-RA | 583..1437 | 873..19 | 4275 | 100 | Minus |
Rad9-RB | 1440 | CG3945-RB | 583..1340 | 873..116 | 3790 | 100 | Minus |
Blos3-RA | 564 | CG34255-RA | 349..449 | 19..119 | 505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18870996..18871753 | 116..873 | 3790 | 100 | Plus |
3L | 28110227 | 3L | 18870682..18870782 | 19..119 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:41:21 has no hits.
BO05423.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:41 Download gff for
BO05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-PA | 514..1371 | 16..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:12 Download gff for
BO05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3945-PA | 514..1371 | 16..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:37 Download gff for
BO05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 583..1443 | 13..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:47 Download gff for
BO05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 583..1443 | 13..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:47 Download gff for
BO05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18870675..18870780 | 13..117 | 96 | <- | Plus |
3L | 18870998..18871753 | 118..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:37 Download gff for
BO05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18863775..18863880 | 13..117 | 96 | <- | Plus |
arm_3L | 18864098..18864853 | 118..873 | 100 | | Plus |
BO05423.5prime Sequence
895 bp (736 high quality bases) assembled on 2005-11-29
> BO05423.5prime
GAAGTTATCAGTCGACATGAAATACACTTTAGAGGGCAGCAATGCAAGAG
TCATCGCCAAAGCCGTACAATCGCTGTCCAAGGTGGGCAAGGAGATGTTC
ATCGAGATCGACCAGCAATCCTTGCAGATGCGGGCCATAAATGCCACCCA
ATCCGCAGTGGGCAGCATATCGTTCAAAAGATCCATGTTCGAAGTGTATG
ACATGCCGCCGCACTCAGATTTCTACTGCAAGATCTCCATGAAGGGATGT
TTGGCCGTGTTCCGCAACATGAATGAGGTGGAGTACTGTGAACTCAACTT
GCTGGACAACCAGACCAACCTGCAGGTGAATCTCCGCTGTAAGCTGGAGA
CCACAAAGGAGGCCACCATTTCCATCATAGACGACCAAAACATTAACACA
AACATTAACACCGATCAGATGCCGAATATAATCCGTGGCGATCACAAGCT
GTTGACGGATATATCCAATAACTTTAACTCCTCAGAGGAGGAACTTACTT
TGGAGGCAAACTCGGGCAGTGTGGTGGCCAAAAACTACATAGAAGGAGCC
CGAGTTAATGATAAGTTCATGCGCACGCAGCTGAAACTTAAGCCCAGTGA
ATTTGAGCAGTACCAGGTAACGAAGGAGACGGTCATTACATTCTGCATTA
AGGAATTCCGAGCATTTCTCCTCTTCGCCGAGTGCTTAAATGCTTCGCTG
ACCCTGGAGTTCGACGAAGCGGGCATGCCTTTCCTGCTCAAAATTAAGAA
GCATGGCGAGATTGAATGCTTGCTGATCATGTCCACGCTATCCCCCGATG
ATATAAGCTTCTCGGAAGATTATTGTCAAAAGGATCTGACAGTGCANGAT
GAGGATGTACGAGCGGCGGCCGCAAAGCGAAAGAGCAGCGTTTCG
BO05423.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3945-PA | 1371 | Rad9-RA | 1..879 | 17..895 | 4376 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-RB | 1440 | CG3945-RB | 70..948 | 17..895 | 4384 | 99.9 | Plus |
Rad9-RA | 1779 | CG3945-RA | 70..948 | 17..895 | 4384 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18871388..18871853 | 895..430 | 2319 | 99.8 | Minus |
3L | 28110227 | 3L | 18872166..18872396 | 279..49 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 18871962..18872115 | 429..276 | 770 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1776..1817 | 368..408 | 108 | 76.2 | Plus |
BO05423.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:42 Download gff for
BO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:14 Download gff for
BO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3945-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:14 Download gff for
BO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 70..948 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:29 Download gff for
BO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 70..948 | 17..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:29 Download gff for
BO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18871388..18871853 | 430..895 | 99 | <- | Minus |
3L | 18871962..18872113 | 278..429 | 100 | <- | Minus |
3L | 18872168..18872394 | 51..277 | 100 | <- | Minus |
3L | 18872451..18872484 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:14 Download gff for
BO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18864488..18864953 | 430..895 | 99 | <- | Minus |
arm_3L | 18865062..18865213 | 278..429 | 100 | <- | Minus |
arm_3L | 18865268..18865494 | 51..277 | 100 | <- | Minus |
arm_3L | 18865551..18865584 | 17..50 | 100 | | Minus |
BO05423.complete Sequence
1402 bp (1402 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630028
> BO05423.complete
GAAGTTATCAGTCGACATGAAATACACTTTAGAGGGCAGCAATGCAAGAG
TCATCGCCAAAGCCGTACAATCGCTGTCCAAGGTGGGCAAGGAGATGTTC
ATCGAGATCGACCAGCAATCCTTGCAGATGCGGGCCATAAATGCCACCCA
ATCCGCAGTGGGCAGCATATCGTTCAAAAGATCCATGTTCGAAGTGTATG
ACATGCCGCCGCACTCAGATTTCTACTGCAAGATCTCCATGAAGGGATGT
TTGGCCGTGTTCCGCAACATGAATGAGGTGGAGTACTGTGAACTCAACTT
GCTGGACAACCAGACCAACCTGCAGGTGAATCTCCGCTGTAAGCTGGAGA
CCACAAAGGAGGCCACCATTTCCATCATAGACGACCAAAACATTAACACA
AACATTAACACCGATCAGATGCCGAATATAATCCGTGGCGATCACAAGCT
GTTGACGGATATATCCAATAACTTTAACTCCTCAGAGGAGGAACTTACTT
TGGAGGCAAACTCGGGCAGTGTGGTGGCCAAAAACTACATAGAAGGAGCC
CGAGTTAATGATAAGTTCATGCGCACGCAGCTGAAACTTAAGCCCAGTGA
ATTTGAGCAGTACCAGGTAACGAAGGAGACGGTCATTACATTCTGCATTA
AGGAATTCCGAGCATTTCTCCTCTTCGCCGAGTGCTTAAATGCTTCGCTG
ACCCTGGAGTTCGACGAAGCGGGCATGCCTTTCCTGCTCAAAATTAAGAA
GCATGGCGAGATTGAATGCTTGCTGATCATGTCCACGCTATCCCCCGATG
ATATAAGCTTCTCGGAAGATTATTGTCAAAAGGATCTGACAGTGCAGGAT
GAGGATGTACGAGCGGCGGCCGCAAAGCGAAAGAGCAGCGTTTCGAAGCC
GAATGTGACCAACAAACGCAAAGGCAGCTCTTCGGAACCGGCTGCAGTGC
AGCCAAAACGGCGAGTTGAGGAGACCCAATTAGAATCGAGCCTAGATAAT
CCACTGTTTCAGTTCCGGGACTCGGAGGCGCCATCTGTTCAGCACCCTCG
CATCCTAGCCGAGGTGGACACTGTGGTTCTGATTGAAGATGAGGCGGAAC
AAGAGGCTCTCATGCTGGCAGCCGCGGATGCCGCTTTGGAGGCCAGCATG
GCACCTGCTCCAGAGCCGCCGAACAGCACGGAGGTTTGCTTTATCAACAC
AGACGACTCTCAACAACCTAAACCTGCGAAAAGCTCCTCCGACGAGGACG
AAACTATACCCCAGTCACCTGAGCGCCCTAACAAGGTCCTGGGCGTTCTT
CTGGGCCTGCTGCAGGGATGTGTGAGCCGACTGAAGACTATGTTGCGACT
TGATGAGCATTTGATCAGTGGTTACGAGCTGCTTGCAAGCTTTCTAGACC
AT
BO05423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-RA | 1371 | CG3945-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Rad9-RB | 1371 | CG3945-PB | 1..1271 | 17..1287 | 6355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-RA | 1779 | CG3945-RA | 70..1437 | 17..1384 | 6840 | 100 | Plus |
Rad9-RB | 1440 | CG3945-RB | 70..1340 | 17..1287 | 6355 | 100 | Plus |
Blos3-RA | 564 | CG34255-RA | 349..449 | 1384..1284 | 505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18870996..18871853 | 1287..430 | 4290 | 100 | Minus |
3L | 28110227 | 3L | 18872166..18872396 | 279..49 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 18871962..18872115 | 429..276 | 770 | 100 | Minus |
3L | 28110227 | 3L | 18870682..18870782 | 1384..1284 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:29:52 has no hits.
BO05423.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:56 Download gff for
BO05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 1..1371 | 17..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:16 Download gff for
BO05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 60..1433 | 17..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:45 Download gff for
BO05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 70..1437 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:57 Download gff for
BO05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 60..1433 | 17..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:58 Download gff for
BO05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 70..1437 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:58 Download gff for
BO05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18871962..18872113 | 278..429 | 100 | <- | Minus |
3L | 18872168..18872394 | 51..277 | 100 | <- | Minus |
3L | 18872451..18872484 | 17..50 | 100 | | Minus |
3L | 18870679..18870780 | 1286..1386 | 98 | <- | Minus |
3L | 18870998..18871853 | 430..1285 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:45 Download gff for
BO05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18865062..18865213 | 278..429 | 100 | <- | Minus |
arm_3L | 18865268..18865494 | 51..277 | 100 | <- | Minus |
arm_3L | 18865551..18865584 | 17..50 | 100 | | Minus |
arm_3L | 18863779..18863880 | 1286..1386 | 98 | <- | Minus |
arm_3L | 18864098..18864953 | 430..1285 | 100 | <- | Minus |
BO05423.pep Sequence
Translation from 16 to 1402
> BO05423.pep
MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGS
ISFKRSMFEVYDMPPHSDFYCKISMKGCLAVFRNMNEVEYCELNLLDNQT
NLQVNLRCKLETTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDIS
NNFNSSEEELTLEANSGSVVAKNYIEGARVNDKFMRTQLKLKPSEFEQYQ
VTKETVITFCIKEFRAFLLFAECLNASLTLEFDEAGMPFLLKIKKHGEIE
CLLIMSTLSPDDISFSEDYCQKDLTVQDEDVRAAAAKRKSSVSKPNVTNK
RKGSSSEPAAVQPKRRVEETQLESSLDNPLFQFRDSEAPSVQHPRILAEV
DTVVLIEDEAEQEALMLAAADAALEASMAPAPEPPNSTEVCFINTDDSQQ
PKPAKSSSDEDETIPQSPERPNKVLGVLLGLLQGCVSRLKTMLRLDEHLI
SGYELLASFLDH
BO05423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-PA | 456 | CG3945-PA | 1..456 | 1..456 | 2304 | 100 | Plus |
Rad9-PB | 456 | CG3945-PB | 1..424 | 1..424 | 2146 | 100 | Plus |