Clone BO05423 Report

Search the DGRC for BO05423

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptRad9-RA
Protein status:BO05423.pep: validated full length
Sequenced Size:1402

Clone Sequence Records

BO05423.3prime Sequence

873 bp (727 high quality bases) assembled on 2005-12-02

> BO05423.3prime
ATGGTCTAGAAAGCTTGCAAGCAGCTCGTAACCACTGATCAAATGCTCAT
CAAGTCGCAACATAGTCTTCAGTCGGCTCACACATCCCTGCAGCAGGCCC
AGAAGAACGCCCAGGACCTTGTTAGGGCGCTCAGGTGACTGGGGTATAGT
TTCGTCCTCGTCGGAGGAGCTTTTCGCAGGTTTAGGTTGTTGAGAGTCGT
CTGTGTTGATAAAGCAAACCTCCGTGCTGTTCGGCGGCTCTGGAGCAGGT
GCCATGCTGGCCTCCAAAGCGGCATCCGCGGCTGCCAGCATGAGAGCCTC
TTGTTCCGCCTCATCTTCAATCAGAACCACAGTGTCCACCTCGGCTAGGA
TGCGAGGGTGCTGAACAGATGGCGCCTCCGAGTCCCGGAACTGAAACAGT
GGATTATCTAGGCTCGATTCTAATTGGGTCTCCTCAACTCGCCGTTTTGG
CTGCACTGCAGCCGGTTCCGAAGAGCTGCCTTTGCGTTTGTTGGTCACAT
TCGGCTTCGAAACGCTGCTCTTTCGCTTTGCGGCCGCCGCTCGTACATCC
TCATCCTGCACTGTCAGATCCTTTTGACAATAATCTTCCGAGAAGCTTAT
ATCATCGGGGGATAGCGTGGACATGATCAGCAAGCATTCAATCTCGCCAT
GCTTCTTAATTTTGAGCAGGAAAGGCATGCCCGCTTCGTCGAACTCCAGG
GTCAGCGAAGCATTTAAGCACTCGGCGAAGAGGAGAAATGCTCGGAATTC
CTTAATGCAGAATGTAATGACCGTCTCCTTCGTTACCTGGTACTGCTCAA
ATTCACTGGGCTTAAGTTTCAGCTGCGTGCGCATGAACTTATCATTAACT
CGGGCTCCTTCTATGTAGTTTTT

BO05423.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3945-PA 1371 Rad9-RA 514..1368 873..19 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-RA 1779 CG3945-RA 583..1437 873..19 4275 100 Minus
Rad9-RB 1440 CG3945-RB 583..1340 873..116 3790 100 Minus
Blos3-RA 564 CG34255-RA 349..449 19..119 505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18870996..18871753 116..873 3790 100 Plus
3L 28110227 3L 18870682..18870782 19..119 505 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:41:21 has no hits.

BO05423.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:41 Download gff for BO05423.3prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-PA 514..1371 16..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:12 Download gff for BO05423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3945-PA 514..1371 16..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:37 Download gff for BO05423.3prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 583..1443 13..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:47 Download gff for BO05423.3prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 583..1443 13..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:47 Download gff for BO05423.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18870675..18870780 13..117 96 <- Plus
3L 18870998..18871753 118..873 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:37 Download gff for BO05423.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18863775..18863880 13..117 96 <- Plus
arm_3L 18864098..18864853 118..873 100   Plus

BO05423.5prime Sequence

895 bp (736 high quality bases) assembled on 2005-11-29

> BO05423.5prime
GAAGTTATCAGTCGACATGAAATACACTTTAGAGGGCAGCAATGCAAGAG
TCATCGCCAAAGCCGTACAATCGCTGTCCAAGGTGGGCAAGGAGATGTTC
ATCGAGATCGACCAGCAATCCTTGCAGATGCGGGCCATAAATGCCACCCA
ATCCGCAGTGGGCAGCATATCGTTCAAAAGATCCATGTTCGAAGTGTATG
ACATGCCGCCGCACTCAGATTTCTACTGCAAGATCTCCATGAAGGGATGT
TTGGCCGTGTTCCGCAACATGAATGAGGTGGAGTACTGTGAACTCAACTT
GCTGGACAACCAGACCAACCTGCAGGTGAATCTCCGCTGTAAGCTGGAGA
CCACAAAGGAGGCCACCATTTCCATCATAGACGACCAAAACATTAACACA
AACATTAACACCGATCAGATGCCGAATATAATCCGTGGCGATCACAAGCT
GTTGACGGATATATCCAATAACTTTAACTCCTCAGAGGAGGAACTTACTT
TGGAGGCAAACTCGGGCAGTGTGGTGGCCAAAAACTACATAGAAGGAGCC
CGAGTTAATGATAAGTTCATGCGCACGCAGCTGAAACTTAAGCCCAGTGA
ATTTGAGCAGTACCAGGTAACGAAGGAGACGGTCATTACATTCTGCATTA
AGGAATTCCGAGCATTTCTCCTCTTCGCCGAGTGCTTAAATGCTTCGCTG
ACCCTGGAGTTCGACGAAGCGGGCATGCCTTTCCTGCTCAAAATTAAGAA
GCATGGCGAGATTGAATGCTTGCTGATCATGTCCACGCTATCCCCCGATG
ATATAAGCTTCTCGGAAGATTATTGTCAAAAGGATCTGACAGTGCANGAT
GAGGATGTACGAGCGGCGGCCGCAAAGCGAAAGAGCAGCGTTTCG

BO05423.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3945-PA 1371 Rad9-RA 1..879 17..895 4376 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-RB 1440 CG3945-RB 70..948 17..895 4384 99.9 Plus
Rad9-RA 1779 CG3945-RA 70..948 17..895 4384 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18871388..18871853 895..430 2319 99.8 Minus
3L 28110227 3L 18872166..18872396 279..49 1155 100 Minus
3L 28110227 3L 18871962..18872115 429..276 770 100 Minus
Blast to na_te.dros performed 2015-02-10 15:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1776..1817 368..408 108 76.2 Plus

BO05423.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:42 Download gff for BO05423.5prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:14 Download gff for BO05423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3945-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:14 Download gff for BO05423.5prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 70..948 17..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:29 Download gff for BO05423.5prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 70..948 17..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:29 Download gff for BO05423.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18871388..18871853 430..895 99 <- Minus
3L 18871962..18872113 278..429 100 <- Minus
3L 18872168..18872394 51..277 100 <- Minus
3L 18872451..18872484 17..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:14 Download gff for BO05423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18864488..18864953 430..895 99 <- Minus
arm_3L 18865062..18865213 278..429 100 <- Minus
arm_3L 18865268..18865494 51..277 100 <- Minus
arm_3L 18865551..18865584 17..50 100   Minus

BO05423.complete Sequence

1402 bp (1402 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630028

> BO05423.complete
GAAGTTATCAGTCGACATGAAATACACTTTAGAGGGCAGCAATGCAAGAG
TCATCGCCAAAGCCGTACAATCGCTGTCCAAGGTGGGCAAGGAGATGTTC
ATCGAGATCGACCAGCAATCCTTGCAGATGCGGGCCATAAATGCCACCCA
ATCCGCAGTGGGCAGCATATCGTTCAAAAGATCCATGTTCGAAGTGTATG
ACATGCCGCCGCACTCAGATTTCTACTGCAAGATCTCCATGAAGGGATGT
TTGGCCGTGTTCCGCAACATGAATGAGGTGGAGTACTGTGAACTCAACTT
GCTGGACAACCAGACCAACCTGCAGGTGAATCTCCGCTGTAAGCTGGAGA
CCACAAAGGAGGCCACCATTTCCATCATAGACGACCAAAACATTAACACA
AACATTAACACCGATCAGATGCCGAATATAATCCGTGGCGATCACAAGCT
GTTGACGGATATATCCAATAACTTTAACTCCTCAGAGGAGGAACTTACTT
TGGAGGCAAACTCGGGCAGTGTGGTGGCCAAAAACTACATAGAAGGAGCC
CGAGTTAATGATAAGTTCATGCGCACGCAGCTGAAACTTAAGCCCAGTGA
ATTTGAGCAGTACCAGGTAACGAAGGAGACGGTCATTACATTCTGCATTA
AGGAATTCCGAGCATTTCTCCTCTTCGCCGAGTGCTTAAATGCTTCGCTG
ACCCTGGAGTTCGACGAAGCGGGCATGCCTTTCCTGCTCAAAATTAAGAA
GCATGGCGAGATTGAATGCTTGCTGATCATGTCCACGCTATCCCCCGATG
ATATAAGCTTCTCGGAAGATTATTGTCAAAAGGATCTGACAGTGCAGGAT
GAGGATGTACGAGCGGCGGCCGCAAAGCGAAAGAGCAGCGTTTCGAAGCC
GAATGTGACCAACAAACGCAAAGGCAGCTCTTCGGAACCGGCTGCAGTGC
AGCCAAAACGGCGAGTTGAGGAGACCCAATTAGAATCGAGCCTAGATAAT
CCACTGTTTCAGTTCCGGGACTCGGAGGCGCCATCTGTTCAGCACCCTCG
CATCCTAGCCGAGGTGGACACTGTGGTTCTGATTGAAGATGAGGCGGAAC
AAGAGGCTCTCATGCTGGCAGCCGCGGATGCCGCTTTGGAGGCCAGCATG
GCACCTGCTCCAGAGCCGCCGAACAGCACGGAGGTTTGCTTTATCAACAC
AGACGACTCTCAACAACCTAAACCTGCGAAAAGCTCCTCCGACGAGGACG
AAACTATACCCCAGTCACCTGAGCGCCCTAACAAGGTCCTGGGCGTTCTT
CTGGGCCTGCTGCAGGGATGTGTGAGCCGACTGAAGACTATGTTGCGACT
TGATGAGCATTTGATCAGTGGTTACGAGCTGCTTGCAAGCTTTCTAGACC
AT

BO05423.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-RA 1371 CG3945-PA 1..1368 17..1384 6840 100 Plus
Rad9-RB 1371 CG3945-PB 1..1271 17..1287 6355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-RA 1779 CG3945-RA 70..1437 17..1384 6840 100 Plus
Rad9-RB 1440 CG3945-RB 70..1340 17..1287 6355 100 Plus
Blos3-RA 564 CG34255-RA 349..449 1384..1284 505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18870996..18871853 1287..430 4290 100 Minus
3L 28110227 3L 18872166..18872396 279..49 1155 100 Minus
3L 28110227 3L 18871962..18872115 429..276 770 100 Minus
3L 28110227 3L 18870682..18870782 1384..1284 505 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:29:52 has no hits.

BO05423.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:56 Download gff for BO05423.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 1..1371 17..1387 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:16 Download gff for BO05423.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 60..1433 17..1390 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:45 Download gff for BO05423.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 70..1437 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:57 Download gff for BO05423.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 60..1433 17..1390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:58 Download gff for BO05423.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 70..1437 17..1386 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:58 Download gff for BO05423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18871962..18872113 278..429 100 <- Minus
3L 18872168..18872394 51..277 100 <- Minus
3L 18872451..18872484 17..50 100   Minus
3L 18870679..18870780 1286..1386 98 <- Minus
3L 18870998..18871853 430..1285 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:45 Download gff for BO05423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18865062..18865213 278..429 100 <- Minus
arm_3L 18865268..18865494 51..277 100 <- Minus
arm_3L 18865551..18865584 17..50 100   Minus
arm_3L 18863779..18863880 1286..1386 98 <- Minus
arm_3L 18864098..18864953 430..1285 100 <- Minus

BO05423.pep Sequence

Translation from 16 to 1402

> BO05423.pep
MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGS
ISFKRSMFEVYDMPPHSDFYCKISMKGCLAVFRNMNEVEYCELNLLDNQT
NLQVNLRCKLETTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDIS
NNFNSSEEELTLEANSGSVVAKNYIEGARVNDKFMRTQLKLKPSEFEQYQ
VTKETVITFCIKEFRAFLLFAECLNASLTLEFDEAGMPFLLKIKKHGEIE
CLLIMSTLSPDDISFSEDYCQKDLTVQDEDVRAAAAKRKSSVSKPNVTNK
RKGSSSEPAAVQPKRRVEETQLESSLDNPLFQFRDSEAPSVQHPRILAEV
DTVVLIEDEAEQEALMLAAADAALEASMAPAPEPPNSTEVCFINTDDSQQ
PKPAKSSSDEDETIPQSPERPNKVLGVLLGLLQGCVSRLKTMLRLDEHLI
SGYELLASFLDH

BO05423.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-PA 456 CG3945-PA 1..456 1..456 2304 100 Plus
Rad9-PB 456 CG3945-PB 1..424 1..424 2146 100 Plus