Clone BO05424 Report

Search the DGRC for BO05424

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptDek-RB
Protein status:BO05424.pep: Imported from assembly
Sequenced Size:2041

Clone Sequence Records

BO05424.3prime Sequence

910 bp (742 high quality bases) assembled on 2005-12-02

> BO05424.3prime
ATGGTCTAGAAAGCTTGCTGTCGCAATTAACGCTTTCACTGTCGCCTTGA
TGAAGTCTTTCTTGTCTGTTAGGTCAAAGTCTGGATATTTTGCATAAACT
TGTTTGCACACGGTTTTCATCGTAATCTCCTCAAGATTGGCTTTATCCAG
AATCTCTTTGACATATCCGCGTATTTGTTCATCCGTTGGGAATGCCTGTT
TGCCCTTTTTGGTTAGTGGCTCATCCTCGTCGGATTCATCTTTGTCATCG
ACATCATCATCTTCCTCGGACGATTCCTTCTTTGATTTTTTCGATCGACT
ATCGGCCTTTCCAGCTGGTTTTGACTTGTTGTTAGCTTTGCTATTTTTCG
CAGGCGTAATGGGCTTCTTGCTCTTTTTGGGACGTTCCTCTTCGCTTTGA
TCGCTGGCAAAATCGGAGACATCCTCCTCCTCTTCATCCTCGGATACCTC
CTCATCTTCGCTATCTGAATCTTTACGCTTGCGGGAAGCTGCACCTCGTC
CTCTACCCCTTCGTCCAGCTGACGCAGGAGCTGCCGGTCGTCCACGTTTA
CCCACGGAACCACGTTTACGTTTTGGGACATCACTATCGGCATCGGAAAC
TTCCGATTCCTCTTCTTCCTCGGAATCAGAGTTTCTTCTGCGACTTTTGC
GCGCAGGACGACCGCGTCCACCGCGGCTTGGGACTTTGCGACCTGCTGCA
CCAGCACCACCACCACGACCACCGTCAGAGTCGGAATTGGCAGAAGGATT
GTAATCTGAGCCCGACTCGGAGTCATCATTTCGTCTCCTTTTGGGAACTG
CAACTTTCTGCTCGCTATCGTCAGAGCTGGAGAATCTACATAGGCGGACA
TTTTCTTTCCTGCCGTCGCGCGCCTTGGACGTCCGGTGGAATTGCGTGCA
AAACCTCTGC

BO05424.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5935-PB 2010 Dek-RB 1192..2007 834..19 4080 100 Minus
CG5935-PA 1992 Dek-RA 1174..1989 834..19 4080 100 Minus
CG5935-PC 2004 Dek-RC 1186..2001 834..19 4080 100 Minus
CG5935-PD 1839 Dek-RD 1174..1825 834..183 3260 100 Minus
CG5935-PB 2010 Dek-RB 1125..1192 900..833 340 100 Minus
CG5935-PA 1992 Dek-RA 1107..1174 900..833 340 100 Minus
CG5935-PC 2004 Dek-RC 1119..1186 900..833 340 100 Minus
CG5935-PD 1839 Dek-RD 1107..1174 900..833 340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-RE 3947 CG5935-RE 1178..2070 910..19 4410 99.7 Minus
Dek-RC 2579 CG5935-RC 1190..2082 910..19 4410 99.7 Minus
Dek-RA 2567 CG5935-RA 1178..2070 910..19 4410 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16859061..16859250 579..390 950 100 Minus
2R 25286936 2R 16858827..16859002 753..578 880 100 Minus
2R 25286936 2R 16859632..16859789 184..27 775 99.4 Minus
2R 25286936 2R 16859452..16859575 306..183 620 100 Minus
2R 25286936 2R 16858664..16858764 853..754 455 99 Minus
2R 25286936 2R 16859313..16859397 390..306 425 100 Minus
2R 25286936 2R 16858545..16858601 910..854 255 96.5 Minus
Blast to na_te.dros performed on 2015-02-12 10:17:35 has no hits.

BO05424.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:43 Download gff for BO05424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5935-PA 1097..1992 15..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:15 Download gff for BO05424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5935-PC 1109..2004 15..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:35 Download gff for BO05424.3prime
Subject Subject Range Query Range Percent Splice Strand
Dek-RA 1178..2073 15..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:07 Download gff for BO05424.3prime
Subject Subject Range Query Range Percent Splice Strand
Dek-RA 1178..2073 15..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:07 Download gff for BO05424.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16859061..16859249 391..579 100 -> Minus
2R 16859313..16859397 306..390 100 -> Minus
2R 16859453..16859574 184..305 100 -> Minus
2R 16859633..16859785 31..183 100 -> Minus
2R 16858545..16858601 854..910 96 -> Minus
2R 16858664..16858764 754..853 99 -> Minus
2R 16858827..16859000 580..753 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:35 Download gff for BO05424.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12746958..12747079 184..305 100 -> Minus
arm_2R 12746050..12746106 854..910 96 -> Minus
arm_2R 12746169..12746269 754..853 99 -> Minus
arm_2R 12747138..12747290 31..183 100 -> Minus
arm_2R 12746332..12746505 580..753 100 -> Minus
arm_2R 12746566..12746754 391..579 100 -> Minus
arm_2R 12746818..12746902 306..390 100 -> Minus

BO05424.5prime Sequence

890 bp (761 high quality bases) assembled on 2005-12-02

> BO05424.5prime
GAAGTTATCAGTCGACATGCCATCGCCGCACGAAAAGGATGCTAACAAAG
CGGCAGAAACGGCAGCCAAAGAAAATGCCGCCGATAAGGTAAGCGATGTG
GAAAATGCATCGGTTACTGCGGGGGTGGCGAAAGCCGTGGGGGCACAGCC
GGAAAGGGGCTCCAAAGATGCAGCCGAATCCCCCGCCGCTGTCGACGCCT
CTGCCTCTGCCGCCACTGATGACGTCGCTGATAAAAAAGCCAAAGGAGAC
TCAACGGCTGTTTCAAATACCGAATCGGATGCAGCTGCAGCGGACAAAAA
GGAGAAATCCCCCTCGCCGGTAATAAAGAAGTCCAACAATAAGGATGCTA
AAAAGGAGGACAACTCCGAAAAGGACGAGGAGAACTCGGAAGACGGCGAT
GAGCCAGAAGATGAGGCTGATGAGAAAGCTAGCGATGAAGAGAGCGAGAA
GAAGAAACCGAAATTAGATGCAGAGGACAAGATAAAGGATGCCACTGATG
AGTCCAAGCCAAAATCGGGAGCCGATAAGCCCAAGAAACCTGAGCCCAAG
GCCAAGAATGGCAAGGTGGCTAAGGAGGAGGACGACGACGAAGAGGACGA
GGATGATGAGGATGCCGAAGATGACGATGGAGACGAGAACGATGGCCTGG
ACAAGAACAACGAGGTGGCCGAGGATGATGAGAATGTCGTCGCTCTCGCC
GAGATTGATCGCATTAATGAGAATATCAACAAGACTCGTGTAGATGGTCT
GCAAACATTGCATGNCATCTGCTTTGGCGCCAAAGGCAAGAACAATGTGG
TCAAGAAGAACTTGCGATCCTTTGCCGGTTTCGAGTTTGCCAGGATTCAG
CGGAGTACACAAAAAGCTGGAGCCATCAAAAGGTGGATAA

BO05424.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5935-PB 2010 Dek-RB 1..826 17..842 4061 99.6 Plus
CG5935-PC 2004 Dek-RC 11..820 33..842 3981 99.6 Plus
CG5935-PA 1992 Dek-RA 3..808 37..842 3961 99.6 Plus
CG5935-PD 1839 Dek-RD 3..808 37..842 3961 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-RB 2559 CG5935-RB 143..1021 16..890 4254 99.2 Plus
Dek-RC 2579 CG5935-RC 92..953 33..890 4169 99.2 Plus
Dek-RE 3947 CG5935-RE 84..941 37..890 4149 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16857631..16858112 283..764 2410 100 Plus
2R 25286936 2R 16856784..16857052 16..284 1345 100 Plus
2R 25286936 2R 16858181..16858288 767..872 425 97.2 Plus
Blast to na_te.dros performed on 2015-02-11 23:58:27 has no hits.

BO05424.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:44 Download gff for BO05424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5935-PB 1..876 17..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:16 Download gff for BO05424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5935-PB 1..876 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:30 Download gff for BO05424.5prime
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 135..1021 6..890 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:11 Download gff for BO05424.5prime
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 135..1021 6..890 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:11 Download gff for BO05424.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16856776..16857052 6..284 98 -> Plus
2R 16857633..16858114 285..766 99 -> Plus
2R 16858181..16858308 767..890 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:30 Download gff for BO05424.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12744281..12744557 6..284 98 -> Plus
arm_2R 12745138..12745619 285..766 99 -> Plus
arm_2R 12745686..12745813 767..890 96   Plus

BO05424.complete Sequence

2041 bp assembled on 2008-08-14

GenBank Submission: FJ630029

> BO05424.complete
GAAGTTATCAGTCGACATGCCATCGCCGCACGAAAAGGATGCTAACAAAG
CGGCAGAAACGGCAGCCAAAGAAAATGCCGCCGATAAGGTAAGCGATGTG
GAAAATGCATCGGTTACTGCGGGGGTGGCGAAAGCCGTGGGGGCACAGCC
GGAAAGGGGCTCCAAAGATGCAGCCGAATCCCCCGCCGCTGTCGACGCCT
CTGCCTCTGCCGCCACTGATGACGTCGCTGATAAAAAAGCCAAAGGAGAC
TCAACGGCTGTTTCAAATACCGAATCGGATGCAGCTGCAGCGGACAAAAA
GGAGAAATCCCCCTCGCCGGTAATAAAGAAGTCCAACAATAAGGATGCTA
AAAAGGAGGACAACTCCGAAAAGGACGAGGAGAACTCGGAAGACGGCGAT
GAGCCAGAAGATGAGGCTGATGAGAAAGCTAGCGATGAAGAGAGCGAGAA
GAAGAAACCGAAATTAGATGCAGAGGACAAGATAAAGGATGCCACTGATG
AGTCCAAGCCAAAATCGGGAGCCGATAAGCCCAAGAAACCTGAGCCCAAG
GCCAAGAATGGCAAGGTGGCTAAGGAGGAGGACGACGACGAAGAGGACGA
GGATGATGAGGATGCCGAAGATGACGATGGAGACGAGAACGATGGCCTGG
ACAAGAACAACGAGGTGGCCGAGGATGATGAGAATGTCGTCGCTCTCGCC
GAGATTGATCGCATTAATGAGAATATCAACAAGACTCGTGTAGATGGTCT
GCAAACATTGCATGCAATCTGCTTTGGCGCCCAAGGCAAGAACAATGTGG
TCAAGAAGAACTTGCGATCCTTTGCCGGTTTCGAGTTTGCCAAGGATTCA
GCGGAGTACAACAAAAAGCTGGAGGCCATCAAAAAGGTGGATAATAAGGG
CCTGCGCAGCATCTGCGAGATCCTTACCCTCGATCGCAAGGGCAGCAAGA
ACGAGACTGTCCTTCGAGTGCTCAAATTCCTAATGGAACCGGACGAGTCG
CTTTGCTTGGAGCAGGGTGATGAGGAGGAGGAGGAAGATGCCGAGGACGA
GGATCTGGATGAAGATGAGGAGGACCCGCCCAGTGAAGAGGACAAGAAGC
GCAAGAGCGGAAAGTCTAGCGGCGGCGCTGGCAGAGGCTCTGCACGCAAT
TCCACCGGACGTCCAAGGCGCGCGACGGCAGGAAAGAAAATGTCCGCCTA
TGTAGATTTCTCCAGCTCTGACGATAGCGAGCAGAAAGTTGCAGTTCCCA
AAAGGAGACGAAATGATGACTCCGAGTCGGGCTCAGATTACAATCCTTCT
GCCAATTCCGACTCTGACGGTGGTCGTGGTGGTGGTGCTGGTGCAGCAGG
TCGCAAAGTCCCAAGCCGCGGTGGACGCGGTCGTCCTGCGCGCAAAAGTC
GCAGAAGAAACTCTGATTCCGAGGAAGAAGAGGAATCGGAAGTTTCCGAT
GCCGATAGTGATGTCCCAAAACGTAAACGTGGTTCCGTGGGTAAACGTGG
ACGACCGGCAGCTCCTGCGTCAGCTGGACGAAGGGGTAGAGGACGAGGTG
CAGCTTCCCGCAAGCGTAAAGATTCAGATAGCGAAGATGAGGAGGTATCC
GAGGATGAAGAGGAGGAGGATGTCTCCGATTTTGCCAGCGATCAAAGCGA
AGAGGAACGTCCCAAAAAGAGCAAGAAGCCCATTACGCCTGCGAAAAATA
GCAAAGCTAACAACAAGTCAAAACCAGCTGGAAAGGCCGATAGTCGATCG
AAAAAATCAAAGAAGGAATCGTCCGAGGAAGATGATGATGTCGATGACAA
AGATGAATCCGACGAGGATGAGCCACTAACCAAAAAGGGCAAACAGGCAT
TCCCAACGGATGAACAAATACGCGGATATGTCAAAGAGATTCTGGATAAA
GCCAATCTTGAGGAGATTACGATGAAAACCGTGTGCAAACAAGTTTATGC
AAAATATCCAGACTTTGACCTAACAGACAAGAAAGACTTCATCAAGGCGA
CAGTGAAAGCGTTAATTGCGACAGCAAGCTTTCTAGACCAT

BO05424.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-RB 2010 CG5935-PB 1..2007 17..2023 10035 100 Plus
Dek-RC 2004 CG5935-PC 11..2001 33..2023 9955 100 Plus
Dek-RE 1992 CG5935-PE 3..1989 37..2023 9935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-RB 2559 CG5935-RB 143..2150 16..2023 10040 100 Plus
Dek-RC 2579 CG5935-RC 92..2082 33..2023 9955 100 Plus
Dek-RE 3947 CG5935-RE 84..2070 37..2023 9935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16857631..16858114 283..766 2420 100 Plus
2R 25286936 2R 16858181..16858601 767..1187 2105 100 Plus
2R 25286936 2R 16856784..16857052 16..284 1345 100 Plus
2R 25286936 2R 16859061..16859250 1463..1652 950 100 Plus
2R 25286936 2R 16858827..16859002 1289..1464 880 100 Plus
2R 25286936 2R 16859632..16859789 1858..2015 775 99.4 Plus
2R 25286936 2R 16859452..16859575 1736..1859 620 100 Plus
2R 25286936 2R 16858664..16858764 1188..1288 505 100 Plus
2R 25286936 2R 16859313..16859397 1652..1736 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:44:12 has no hits.

BO05424.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:17 Download gff for BO05424.complete
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 153..2171 6..2027 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:51 Download gff for BO05424.complete
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 144..2150 17..2025 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:12 Download gff for BO05424.complete
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 162..2168 17..2025 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:43 Download gff for BO05424.complete
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 144..2150 17..2025 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:43 Download gff for BO05424.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16856785..16857052 17..284 100 -> Plus
2R 16857633..16858114 285..766 100 -> Plus
2R 16858181..16858601 767..1187 100 -> Plus
2R 16858664..16858764 1188..1288 100 -> Plus
2R 16858827..16859000 1289..1462 100 -> Plus
2R 16859061..16859249 1463..1651 100 -> Plus
2R 16859313..16859397 1652..1736 100 -> Plus
2R 16859453..16859574 1737..1858 100 -> Plus
2R 16859633..16859785 1859..2011 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:51 Download gff for BO05424.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12744290..12744557 17..284 100 -> Plus
arm_2R 12745138..12745619 285..766 100 -> Plus
arm_2R 12745686..12746106 767..1187 100 -> Plus
arm_2R 12746169..12746269 1188..1288 100 -> Plus
arm_2R 12746332..12746505 1289..1462 100 -> Plus
arm_2R 12746566..12746754 1463..1651 100 -> Plus
arm_2R 12746818..12746902 1652..1736 100 -> Plus
arm_2R 12746958..12747079 1737..1858 100 -> Plus
arm_2R 12747138..12747290 1859..2011 100 -> Plus

BO05424.pep Sequence

Translation from 16 to 2041

> BO05424.pep
MPSPHEKDANKAAETAAKENAADKVSDVENASVTAGVAKAVGAQPERGSK
DAAESPAAVDASASAATDDVADKKAKGDSTAVSNTESDAAAADKKEKSPS
PVIKKSNNKDAKKEDNSEKDEENSEDGDEPEDEADEKASDEESEKKKPKL
DAEDKIKDATDESKPKSGADKPKKPEPKAKNGKVAKEEDDDEEDEDDEDA
EDDDGDENDGLDKNNEVAEDDENVVALAEIDRINENINKTRVDGLQTLHA
ICFGAQGKNNVVKKNLRSFAGFEFAKDSAEYNKKLEAIKKVDNKGLRSIC
EILTLDRKGSKNETVLRVLKFLMEPDESLCLEQGDEEEEEDAEDEDLDED
EEDPPSEEDKKRKSGKSSGGAGRGSARNSTGRPRRATAGKKMSAYVDFSS
SDDSEQKVAVPKRRRNDDSESGSDYNPSANSDSDGGRGGGAGAAGRKVPS
RGGRGRPARKSRRRNSDSEEEEESEVSDADSDVPKRKRGSVGKRGRPAAP
ASAGRRGRGRGAASRKRKDSDSEDEEVSEDEEEEDVSDFASDQSEEERPK
KSKKPITPAKNSKANNKSKPAGKADSRSKKSKKESSEEDDDVDDKDESDE
DEPLTKKGKQAFPTDEQIRGYVKEILDKANLEEITMKTVCKQVYAKYPDF
DLTDKKDFIKATVKALIATASFLDH

BO05424.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-PB 669 CG5935-PB 1..669 1..669 3401 100 Plus
Dek-PC 667 CG5935-PC 4..667 6..669 3366 99.8 Plus
Dek-PE 663 CG5935-PE 2..663 8..669 3360 100 Plus
Dek-PA 663 CG5935-PA 2..663 8..669 3360 100 Plus
Dek-PD 612 CG5935-PD 2..608 8..614 3081 100 Plus