Clone BO05426 Report

Search the DGRC for BO05426

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptcact-RA
Protein status:BO05426.pep: full length peptide match
Sequenced Size:1534

Clone Sequence Records

BO05426.3prime Sequence

894 bp (771 high quality bases) assembled on 2005-12-02

> BO05426.3prime
ATGGTCTAGAAAGCTTGCGGCAACTGTCATGGGATTGCCACCGTTGTAGC
TGACAAAATAGCGAGGATCACCAAAGCGATCGTACATCTTCGTATCGTCT
AGATCTTCGATATCGCTACTGTCGTAATCACTGTCCGGAGGCGTTACGGT
CTCCGCTCCGCGCTTCTCCAGGATGTTCTGCATGCGCGACTTGTTCATGA
TGCACGCAAACTGGTAGGCCGTCAAGCCGGCGTAGGTGGCCGTTTCCAGG
TTCAGCTTCTCGCACTCATCGAGCAGGAAGTTGGCCAGATCCTCGTTGCA
GCCCTCGATCGCAATGTGCAGCGGTGTGCGGCCCGATTTTCCCTCCCTGG
CGTTAATGTCTGCTCCATGGGATACCAAAATGCGTAAGATATCAATGTGA
CCCGCCTCGGCGGCCAAATGCACACAGCGTTCTCCATCGTAGTTGCGAAT
CTCCAGATCGGCGGGCAGGCAGGCGTAGCTCAGGGAACTGACCGCTTTGT
CGTTGGATCGGTGTCCATATTGTCGGTGGGCCTCATGGATTTCCGTGGCG
CCGAACTTCTCTGTCAAGGCACGGACGCACTGTTTCTCTCCGGCGATGCA
GGAAAGATGCAGAGCTGTGTTTCCATGACGATCGCGCACCGTGGGCTCAG
CTCCGGCGAGTAAAAGTATCCTCATGATGTTCGGCTGGGCAGTAAGAGCG
GCCAGATGAAGGGGTGTCTGGGCCACATCGTTCTGGATGTTGAGCAGGCA
CGGATGAGGAGCCATGCGAATCAGGGCGGCCACCACGTCCACTGATCCCG
AAATACAGGCCAGGTGCAAAGGTGTGTCGCCGTCGTCGTTTTGTTGATAG
AACTGCTCCCAGGCGTTCATGATATTAATGCTGCTGGGCGGAGC

BO05426.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5848-PA 1503 cact-RA 625..1500 894..19 4380 100 Minus
CG5848-PB 1503 cact-RB 625..1500 894..19 4380 100 Minus
CG5848-PD 1503 cact-RD 625..1500 894..19 4380 100 Minus
CG5848-PC 1449 cact-RC 625..1431 894..88 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1999 CG5848-RE 839..1714 894..19 4380 100 Minus
cact-RD 2178 CG5848-RD 1018..1893 894..19 4380 100 Minus
cact-RB 2005 CG5848-RB 784..1659 894..19 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16314451..16314709 88..346 1295 100 Plus
2L 23513712 2L 16322959..16323172 434..647 1070 100 Plus
2L 23513712 2L 16323340..16323517 646..823 890 100 Plus
2L 23513712 2L 16314769..16314859 345..435 455 100 Plus
2L 23513712 2L 16313382..16313452 19..89 355 100 Plus
2L 23513712 2L 16324333..16324403 824..894 355 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:18:45 has no hits.

BO05426.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:47 Download gff for BO05426.3prime
Subject Subject Range Query Range Percent Splice Strand
cact-PB 625..1503 16..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:21 Download gff for BO05426.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5848-PD 625..1503 16..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:55 Download gff for BO05426.3prime
Subject Subject Range Query Range Percent Splice Strand
cact-RB 784..1663 15..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:03 Download gff for BO05426.3prime
Subject Subject Range Query Range Percent Splice Strand
cact-RB 784..1663 15..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:03 Download gff for BO05426.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16323340..16323517 646..823 100 <- Plus
2L 16324333..16324403 824..894 100   Plus
2L 16313378..16313450 15..87 97 <- Plus
2L 16314451..16314708 88..345 100 <- Plus
2L 16314770..16314858 346..434 100 <- Plus
2L 16322960..16323170 435..645 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:55 Download gff for BO05426.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16313378..16313450 15..87 97 <- Plus
arm_2L 16314451..16314708 88..345 100 <- Plus
arm_2L 16314770..16314858 346..434 100 <- Plus
arm_2L 16322960..16323170 435..645 100 <- Plus
arm_2L 16323340..16323517 646..823 100 <- Plus
arm_2L 16324333..16324403 824..894 100   Plus

BO05426.5prime Sequence

940 bp (830 high quality bases) assembled on 2005-12-02

> BO05426.5prime
GAAGTTATCAGTCGACATGCCGAGCCCAACAAAAGCAGCGGAGGCAGCAA
CAAAGGCAACAGCAACAAGTGACTGCAGCTGCAGCGCTGCCAGTGTTGAG
CAGCGCGCCCCCTCAAACGCGGCTAACCCCTCGTCCTCACTAGCCACTAG
CGGTAAAATTGGCGGCAAAACACAAGATCAAACGGCCGCCATTAACAAGC
AAAAGGAATTTGCCGTGCCAAACGAAACCAGTGATTCGGGCTTCATCTCC
GGCCCGCAATCCTCGCAGATCTTCAGCGAGGAGATAGTCCCCGATAGCGA
GGAACAGGATAAGGATCAGCAGGAGTCGGCACCCCAAAAGGAACAGCCCG
TTGTCCTCGATTCCGGTATTATCGACGAAGAAGAGGATCAGGAGGAGCAG
GAGAAAGAGGAGGAGCACCAGGACACCACCACTGCCACCGCCGATTCAAT
GCGACTCAAACACAGCGCGGACACAGGCATCCCACAATGGACCGTCGAAA
GCCATTTGGTCAGTCGCGGCGAACAGCTTAACAATCTCGGCCAGAGCAGC
AGCACCCAAATCACCGGTCGCAGCAAGGTTCAATCCTCCACAGCCAGCAC
GGCGAACGCGAATCCTTCGGGATCGGGAGCAACATCATCCGCTCCGCCCA
GCAGCATTAATATCATGAACGCCTGGGAGCAGTTCTATCAACAAAACGAC
GACGGCGACACACCTTTGCACCTGGCCTGTATTTCGGGATCAGTGGACGT
GGTGGCCGCCCTGATTCGCATGGCTCCTCATCCGTGCCTGCTCAACATCC
AGAACGATGTGGCCCAGACACCCCTTCATCTGGCCGCTCTTACTGCCCAG
CCGAACATCATGAGGATACTTTTACTCGCCGGAGCTGAGCCCCACGTGCG
CGATCGTCATGGAAACACAGCTCTGCATCTTTCCTGCATC

BO05426.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5848-PA 1503 cact-RA 1..876 17..892 4380 100 Plus
CG5848-PB 1503 cact-RB 1..876 17..892 4380 100 Plus
CG5848-PC 1449 cact-RC 1..876 17..892 4380 100 Plus
CG5848-PD 1503 cact-RD 1..876 17..892 4380 100 Plus
CG5848-PA 1503 cact-RA 880..924 896..940 225 100 Plus
CG5848-PB 1503 cact-RB 880..924 896..940 225 100 Plus
CG5848-PC 1449 cact-RC 880..924 896..940 225 100 Plus
CG5848-PD 1503 cact-RD 880..924 896..940 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1999 CG5848-RE 215..1138 17..940 4575 99.8 Plus
cact-RD 2178 CG5848-RD 394..1317 17..940 4575 99.8 Plus
cact-RC 2356 CG5848-RC 160..1083 17..940 4575 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16324333..16325027 711..17 3475 100 Minus
2L 23513712 2L 16323340..16323517 889..712 890 100 Minus
2L 23513712 2L 16323120..16323164 940..896 225 100 Minus
Blast to na_te.dros performed 2015-02-09 18:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6845 27..85 132 74.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2420 27..92 122 68.7 Plus

BO05426.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:48 Download gff for BO05426.5prime
Subject Subject Range Query Range Percent Splice Strand
cact-PD 1..924 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:22 Download gff for BO05426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5848-PC 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:37 Download gff for BO05426.5prime
Subject Subject Range Query Range Percent Splice Strand
cact-RC 153..1083 9..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:55 Download gff for BO05426.5prime
Subject Subject Range Query Range Percent Splice Strand
cact-RC 153..1083 9..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:55 Download gff for BO05426.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16323120..16323170 890..940 96 <- Minus
2L 16323340..16323517 712..889 100 <- Minus
2L 16324333..16325034 9..711 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:37 Download gff for BO05426.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16323120..16323170 890..940 96 <- Minus
arm_2L 16323340..16323517 712..889 100 <- Minus
arm_2L 16324333..16325034 9..711 99   Minus

BO05426.complete Sequence

1534 bp (1534 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630030

> BO05426.complete
GAAGTTATCAGTCGACATGCCGAGCCCAACAAAAGCAGCGGAGGCAGCAA
CAAAGGCAACAGCAACAAGTGACTGCAGCTGCAGCGCTGCCAGTGTTGAG
CAGCGCGCCCCCTCAAACGCGGCTAACCCCTCGTCCTCACTAGCCACTAG
CGGTAAAATTGGCGGCAAAACACAAGATCAAACGGCCGCCATTAACAAGC
AAAAGGAATTTGCCGTGCCAAACGAAACCAGTGATTCGGGCTTCATCTCC
GGCCCGCAATCCTCGCAGATCTTCAGCGAGGAGATAGTCCCCGATAGCGA
GGAACAGGATAAGGATCAGCAGGAGTCGGCACCCCAAAAGGAACAGCCCG
TTGTCCTCGATTCCGGTATTATCGACGAAGAAGAGGATCAGGAGGAGCAG
GAGAAAGAGGAGGAGCACCAGGACACCACCACTGCCACCGCCGATTCAAT
GCGACTCAAACACAGCGCGGACACAGGCATCCCACAATGGACCGTCGAAA
GCCATTTGGTCAGTCGCGGCGAACAGCTTAACAATCTCGGCCAGAGCAGC
AGCACCCAAATCACCGGTCGCAGCAAGGTTCAATCCTCCACAGCCAGCAC
GGCGAACGCGAATCCTTCGGGATCGGGAGCAACATCATCCGCTCCGCCCA
GCAGCATTAATATCATGAACGCCTGGGAGCAGTTCTATCAACAAAACGAC
GACGGCGACACACCTTTGCACCTGGCCTGTATTTCGGGATCAGTGGACGT
GGTGGCCGCCCTGATTCGCATGGCTCCTCATCCGTGCCTGCTCAACATCC
AGAACGATGTGGCCCAGACACCCCTTCATCTGGCCGCTCTTACTGCCCAG
CCGAACATCATGAGGATACTTTTACTCGCCGGAGCTGAGCCCACGGTGCG
CGATCGTCATGGAAACACAGCTCTGCATCTTTCCTGCATCGCCGGAGAGA
AACAGTGCGTCCGTGCCTTGACAGAGAAGTTCGGCGCCACGGAAATCCAT
GAGGCCCACCGACAATATGGACACCGATCCAACGACAAAGCGGTCAGTTC
CCTGAGCTACGCCTGCCTGCCCGCCGATCTGGAGATTCGCAACTACGATG
GAGAACGCTGTGTGCATTTGGCCGCCGAGGCGGGTCACATTGATATCTTA
CGCATTTTGGTATCCCATGGAGCAGACATTAACGCCAGGGAGGGAAAATC
GGGCCGCACACCGCTGCACATTGCGATCGAGGGCTGCAACGAGGATCTGG
CCAACTTCCTGCTCGATGAGTGCGAGAAGCTGAACCTGGAAACGGCCACC
TACGCCGGCTTGACGGCCTACCAGTTTGCGTGCATCATGAACAAGTCGCG
CATGCAGAACATCCTGGAGAAGCGCGGAGCGGAGACCGTAACGCCTCCGG
ACAGTGATTACGACAGTAGCGATATCGAAGATCTAGACGATACGAAGATG
TACGATCGCTTTGGTGATCCTCGCTATTTTGTCAGCTACAACGGTGGCAA
TCCCATGACAGTTGCCGCAAGCTTTCTAGACCAT

BO05426.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1503 CG5848-PE 1..1500 17..1516 7500 100 Plus
cact-RD 1503 CG5848-PD 1..1500 17..1516 7500 100 Plus
cact-RB 1503 CG5848-PB 1..1500 17..1516 7500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1999 CG5848-RE 215..1714 17..1516 7500 100 Plus
cact-RD 2178 CG5848-RD 394..1893 17..1516 7500 100 Plus
cact-RB 2005 CG5848-RB 160..1659 17..1516 7500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16324333..16325027 711..17 3475 100 Minus
2L 23513712 2L 16314451..16314709 1447..1189 1295 100 Minus
2L 23513712 2L 16322959..16323172 1101..888 1070 100 Minus
2L 23513712 2L 16323340..16323517 889..712 890 100 Minus
2L 23513712 2L 16314769..16314859 1190..1100 455 100 Minus
2L 23513712 2L 16313382..16313452 1516..1446 355 100 Minus
Blast to na_te.dros performed 2014-11-28 08:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6845 27..85 132 74.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2420 27..92 122 68.7 Plus

BO05426.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:58 Download gff for BO05426.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RD 1..1503 17..1519 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:41 Download gff for BO05426.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RD 417..1916 17..1518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:28 Download gff for BO05426.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RB 160..1659 17..1518 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:58 Download gff for BO05426.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RD 410..1920 9..1520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:14 Download gff for BO05426.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RB 160..1659 17..1518 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:14 Download gff for BO05426.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16314451..16314708 1190..1447 100 <- Minus
2L 16314770..16314858 1101..1189 100 <- Minus
2L 16322960..16323170 890..1100 100 <- Minus
2L 16323340..16323517 712..889 100 <- Minus
2L 16313379..16313450 1448..1518 97 <- Minus
2L 16324333..16325027 17..711 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:28 Download gff for BO05426.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16323340..16323517 712..889 100 <- Minus
arm_2L 16313379..16313450 1448..1518 97 <- Minus
arm_2L 16314451..16314708 1190..1447 100 <- Minus
arm_2L 16314770..16314858 1101..1189 100 <- Minus
arm_2L 16322960..16323170 890..1100 100 <- Minus
arm_2L 16324333..16325027 17..711 100   Minus

BO05426.pep Sequence

Translation from 16 to 1534

> BO05426.pep
MPSPTKAAEAATKATATSDCSCSAASVEQRAPSNAANPSSSLATSGKIGG
KTQDQTAAINKQKEFAVPNETSDSGFISGPQSSQIFSEEIVPDSEEQDKD
QQESAPQKEQPVVLDSGIIDEEEDQEEQEKEEEHQDTTTATADSMRLKHS
ADTGIPQWTVESHLVSRGEQLNNLGQSSSTQITGRSKVQSSTASTANANP
SGSGATSSAPPSSINIMNAWEQFYQQNDDGDTPLHLACISGSVDVVAALI
RMAPHPCLLNIQNDVAQTPLHLAALTAQPNIMRILLLAGAEPTVRDRHGN
TALHLSCIAGEKQCVRALTEKFGATEIHEAHRQYGHRSNDKAVSSLSYAC
LPADLEIRNYDGERCVHLAAEAGHIDILRILVSHGADINAREGKSGRTPL
HIAIEGCNEDLANFLLDECEKLNLETATYAGLTAYQFACIMNKSRMQNIL
EKRGAETVTPPDSDYDSSDIEDLDDTKMYDRFGDPRYFVSYNGGNPMTVA
ASFLDH

BO05426.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
cact-PE 500 CG5848-PE 1..500 1..500 2580 100 Plus
cact-PD 500 CG5848-PD 1..500 1..500 2580 100 Plus
cact-PB 500 CG5848-PB 1..500 1..500 2580 100 Plus
cact-PA 500 CG5848-PA 1..500 1..500 2580 100 Plus
cact-PC 482 CG5848-PC 1..478 1..478 2451 99.8 Plus