Clone Sequence Records
BO05428.3prime Sequence
855 bp (742 high quality bases) assembled on 2005-12-02
> BO05428.3prime
ATGGTCTAGAAAGCTTGCTTTTAGTTTCTTCTCTTTTTGCGGCGACAATT
TACCTTTCGAGGGCGATGATGAGCTGGCAGGAATAGTTTCTTTTGTTTTT
GCGGGCGTCGATGAAACCTTTTTCAGCTGTCGCTGCTGCCAGTAAACCGC
GAGGTAGACAAATGCCACCGAGATTATTACTTGGACAGTCAGCCACAGGA
CAATGTTGATGGCTTGCGTGCGCTCAAACAACTCCTTGCCATTCTTGATG
CACAGAATAGCTTCGGAGACCATGATGGCGCCGTAAACCCAACACTGGGT
GCCGACTCTCTTGCAGCGTGTGTCGGTGACATATACGTAATATTGCCTAA
CCGAAGGCGCCACAAACAGACCGATGAAAATGAGACGACCTATCACAATG
AAGTGATCCGGTGGCATCTCAAAGATGTGCTTCAAGAAGAATGTGTTCAG
CTCGGTGACCTGCCAGAAGATCACAAGCTGAATGACGGCGGCAAATCTCA
TCGCCGTGGACTTGGGATCCAGCCAGCGAATGGCCGACCAGCTCTCGGGC
GTAAATTGCAGCATGGCACGCTTGATTTTACCCGTTGTGGTGGATATGTC
CTTAATACTGGCCCACTTGTACTCGCGCATCTCCAGAATCTGGCAGATCT
TCAGACCCATCCAAATGCCGAGACCGTTGCAGATGATCACATCCAGGATG
AGGGCATCCCACCAGCACTCGATGAAGTTGGGCAGCAGGTGCGCAAAGGT
TATTTCGGTAATCTCCCACATCACAGAAATGGCCCACAGAATGCCCATGT
GACGAATGAGGATGGCCTTAAAGGCCCAGCCCAAGAAGTGACCCCAGGCA
AAGAC
BO05428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4825-PA | 1497 | CG4825-RA | 658..1494 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4825-RA | 1896 | CG4825-RA | 1006..1842 | 855..19 | 4185 | 100 | Minus |
| CG4825-RB | 2046 | CG4825-RB | 1006..1839 | 855..19 | 4130 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20523629..20524138 | 346..855 | 2550 | 100 | Plus |
| 3L | 28110227 | 3L | 20523352..20523566 | 136..350 | 1075 | 100 | Plus |
| 3L | 28110227 | 3L | 20523200..20523287 | 51..138 | 440 | 100 | Plus |
| 3L | 28110227 | 3L | 20522647..20522683 | 19..55 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:18:53 has no hits.
BO05428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:50 Download gff for
BO05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-PA | 658..1497 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:26 Download gff for
BO05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-PA | 658..1497 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:58 Download gff for
BO05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 1006..1846 | 14..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:22 Download gff for
BO05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 1006..1846 | 14..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:22 Download gff for
BO05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20523352..20523562 | 136..346 | 100 | <- | Plus |
| 3L | 20522643..20522681 | 14..53 | 95 | <- | Plus |
| 3L | 20523203..20523284 | 54..135 | 100 | <- | Plus |
| 3L | 20523630..20524138 | 347..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:58 Download gff for
BO05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20515743..20515781 | 14..53 | 95 | <- | Plus |
| arm_3L | 20516303..20516384 | 54..135 | 100 | <- | Plus |
| arm_3L | 20516452..20516662 | 136..346 | 100 | <- | Plus |
| arm_3L | 20516730..20517238 | 347..855 | 100 | | Plus |
BO05428.5prime Sequence
896 bp (811 high quality bases) assembled on 2005-11-29
> BO05428.5prime
GAAGTTATCAGTCGACATGAAGAAGCGCACTAATTCACGTGGCACCCCGA
CCTCGTCGGGCGACGCGCTACTGGACACCTCCTTCTCCTCCGCCGGCGAT
GCTGAGCGGGATCATCCCGCCTACAAATCAGGCGCGGCCAGTGCCCCTGC
CACGCCCACCAAGCGACGGGATGGCAGCGATGGCAGTGTCAGCAGCGCGG
GAGCACGCAGGAAGCGCAAGGACGAGATCGCCCAGACATTTGTGATCGTC
AACGAACGTCCCGTGGACGACATATCGCTGGACTTCTTCTACAAGCCACA
CACCATCACCTTGCTGGCTGTTTCGGTGCTCGCCGTCATGTACTTTGCGT
TCGTCAGAAACGAGGCGAACGTGGATGAGAATCTCTGGGCCGGCCTCCTC
TGCATTGTGTTCTTCTTTCTGATCGTCTCGGTGATTGCATTTCCCAATGG
ACCCTTCACACGACCCCATCCCGCCGTCTGGCGGATATTATTCGGATGCT
CTGTGCTGTACCTGCTGACGCTACAATTCCTGATGTTCCAAAACTACCCG
ACTATCAGGAGCATATTCTACTGGATTGATCCAAAGTTGAAGAACTTCCA
TATCGATATGGAAAAGGAGTATGGCGTCAATTGTTCGGACATCAGTTGGG
ATCGCGTTAAAGGCCACTTGGACGTCTTTGCCTGGGGTCACTTCTTGGGC
TGGGCCTTTAAGGCCATCCTCATTCGTCACATGGGCATTCTGTGGGCCAT
TTCTGTGATGTGGGAGATTACCGAAATAACCTTTGCGCACCTGCTGCCCA
ACTTCATCGAGTGCTGGTGGGATGCCCTCATCCTGGATGTGATCATCTGC
AACGGTCTCGGCATTTGGATGGGTCTGAAGATCTGCCAGATTCTGG
BO05428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4825-PA | 1497 | CG4825-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4825-RB | 2046 | CG4825-RB | 349..1228 | 17..896 | 4400 | 100 | Plus |
| CG4825-RA | 1896 | CG4825-RA | 349..1228 | 17..896 | 4400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20525486..20525826 | 357..17 | 1705 | 100 | Minus |
| 3L | 28110227 | 3L | 20523916..20524197 | 896..615 | 1410 | 100 | Minus |
| 3L | 28110227 | 3L | 20524254..20524516 | 617..355 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:52:20 has no hits.
BO05428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:51 Download gff for
BO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:29 Download gff for
BO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:07 Download gff for
BO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 344..1228 | 10..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:25 Download gff for
BO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 344..1228 | 10..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:25 Download gff for
BO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20525486..20525831 | 10..357 | 99 | | Minus |
| 3L | 20523916..20524195 | 617..896 | 100 | <- | Minus |
| 3L | 20524255..20524513 | 358..616 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:07 Download gff for
BO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20517016..20517295 | 617..896 | 100 | <- | Minus |
| arm_3L | 20517355..20517613 | 358..616 | 100 | <- | Minus |
| arm_3L | 20518586..20518931 | 10..357 | 99 | | Minus |
BO05428.complete Sequence
1528 bp (1528 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630031
> BO05428.complete
GAAGTTATCAGTCGACATGAAGAAGCGCACTAATTCACGTGGCACCCCGA
CCTCGTCGGGCGACGCGCTACTGGACACCTCCTTCTCCTCCGCCGGCGAT
GCTGAGCGGGATCATCCCGCCTACAAATCAGGCGCGGCCAGTGCCCCTGC
CACGCCCACCAAGCGACGGGATGGCAGCGATGGCAGTGTCAGCAGCGCGG
GAGCACGCAGGAAGCGCAAGGACGAGATCGCCCAGACATTTGTGATCGTC
AACGAACGTCCCGTGGACGACATATCGCTGGACTTCTTCTACAAGCCACA
CACCATCACCTTGCTGGCTGTTTCGGTGCTCGCCGTCATGTACTTTGCGT
TCGTCAGAAACGAGGCGAACGTGGATGAGAATCTCTGGGCCGGCCTCCTC
TGCATTGTGTTCTTCTTTCTGATCGTCTCGGTGATTGCATTTCCCAATGG
ACCCTTCACACGACCCCATCCCGCCGTCTGGCGGATATTATTCGGATGCT
CTGTGCTGTACCTGCTGACGCTACAATTCCTGATGTTCCAAAACTACCCG
ACTATCAGGAGCATATTCTACTGGATTGATCCAAAGTTGAAGAACTTCCA
TATCGATATGGAAAAGGAGTATGGCGTCAATTGTTCGGACATCAGTTGGG
ATCGCGTTAAAGGCCACTTGGACGTCTTTGCCTGGGGTCACTTCTTGGGC
TGGGCCTTTAAGGCCATCCTCATTCGTCACATGGGCATTCTGTGGGCCAT
TTCTGTGATGTGGGAGATTACCGAAATAACCTTTGCGCACCTGCTGCCCA
ACTTCATCGAGTGCTGGTGGGATGCCCTCATCCTGGATGTGATCATCTGC
AACGGTCTCGGCATTTGGATGGGTCTGAAGATCTGCCAGATTCTGGAGAT
GCGCGAGTACAAGTGGGCCAGTATTAAGGACATATCCACCACAACGGGTA
AAATCAAGCGTGCCATGCTGCAATTTACGCCCGAGAGCTGGTCGGCCATT
CGCTGGCTGGATCCCAAGTCCACGGCGATGAGATTTGCCGCCGTCATTCA
GCTTGTGATCTTCTGGCAGGTCACCGAGCTGAACACATTCTTCTTGAAGC
ACATCTTTGAGATGCCACCGGATCACTTCATTGTGATAGGTCGTCTCATT
TTCATCGGTCTGTTTGTGGCGCCTTCGGTTAGGCAATATTACGTATATGT
CACCGACACACGCTGCAAGAGAGTCGGCACCCAGTGTTGGGTTTACGGCG
CCATCATGGTCTCCGAAGCTATTCTGTGCATCAAGAATGGCAAGGAGTTG
TTTGAGCGCACGCAAGCCATCAACATTGTCCTGTGGCTGACTGTCCAAGT
AATAATCTCGGTGGCATTTGTCTACCTCGCGGTTTACTGGCAGCAGCGAC
AGCTGAAAAAGGTTTCATCGACGCCCGCAAAAACAAAAGAAACTATTCCT
GCCAGCTCATCATCGCCCTCGAAAGGTAAATTGTCGCCGCAAAAAGAGAA
GAAACTAAAAGCAAGCTTTCTAGACCAT
BO05428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4825-RA | 1497 | CG4825-PA | 1..1494 | 17..1510 | 7470 | 100 | Plus |
| CG4825-RB | 1494 | CG4825-PB | 1..1491 | 17..1510 | 7390 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4825-RA | 1896 | CG4825-RA | 349..1842 | 17..1510 | 7470 | 100 | Plus |
| CG4825-RB | 2046 | CG4825-RB | 349..1839 | 17..1510 | 7390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20523629..20524197 | 1183..615 | 2845 | 100 | Minus |
| 3L | 28110227 | 3L | 20525486..20525826 | 357..17 | 1705 | 100 | Minus |
| 3L | 28110227 | 3L | 20524254..20524516 | 617..355 | 1315 | 100 | Minus |
| 3L | 28110227 | 3L | 20523352..20523566 | 1393..1179 | 1075 | 100 | Minus |
| 3L | 28110227 | 3L | 20523200..20523287 | 1478..1391 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 20522647..20522683 | 1510..1474 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:27:35 has no hits.
BO05428.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:59 Download gff for
BO05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 1..1497 | 17..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:20 Download gff for
BO05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 351..1853 | 10..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:52 Download gff for
BO05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 349..1838 | 17..1506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:59 Download gff for
BO05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 351..1853 | 10..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:45 Download gff for
BO05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 349..1838 | 17..1506 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:45 Download gff for
BO05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20522651..20522681 | 1476..1506 | 100 | <- | Minus |
| 3L | 20523203..20523284 | 1394..1475 | 100 | <- | Minus |
| 3L | 20523352..20523562 | 1183..1393 | 100 | <- | Minus |
| 3L | 20523630..20524195 | 617..1182 | 100 | <- | Minus |
| 3L | 20524255..20524513 | 358..616 | 100 | <- | Minus |
| 3L | 20525486..20525826 | 17..357 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:52 Download gff for
BO05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20515751..20515781 | 1476..1506 | 100 | <- | Minus |
| arm_3L | 20516303..20516384 | 1394..1475 | 100 | <- | Minus |
| arm_3L | 20516452..20516662 | 1183..1393 | 100 | <- | Minus |
| arm_3L | 20516730..20517295 | 617..1182 | 100 | <- | Minus |
| arm_3L | 20517355..20517613 | 358..616 | 100 | <- | Minus |
| arm_3L | 20518586..20518926 | 17..357 | 100 | | Minus |
BO05428.pep Sequence
Translation from 16 to 1528
> BO05428.pep
MKKRTNSRGTPTSSGDALLDTSFSSAGDAERDHPAYKSGAASAPATPTKR
RDGSDGSVSSAGARRKRKDEIAQTFVIVNERPVDDISLDFFYKPHTITLL
AVSVLAVMYFAFVRNEANVDENLWAGLLCIVFFFLIVSVIAFPNGPFTRP
HPAVWRILFGCSVLYLLTLQFLMFQNYPTIRSIFYWIDPKLKNFHIDMEK
EYGVNCSDISWDRVKGHLDVFAWGHFLGWAFKAILIRHMGILWAISVMWE
ITEITFAHLLPNFIECWWDALILDVIICNGLGIWMGLKICQILEMREYKW
ASIKDISTTTGKIKRAMLQFTPESWSAIRWLDPKSTAMRFAAVIQLVIFW
QVTELNTFFLKHIFEMPPDHFIVIGRLIFIGLFVAPSVRQYYVYVTDTRC
KRVGTQCWVYGAIMVSEAILCIKNGKELFERTQAINIVLWLTVQVIISVA
FVYLAVYWQQRQLKKVSSTPAKTKETIPASSSSPSKGKLSPQKEKKLKAS
FLDH
BO05428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4825-PA | 498 | CG4825-PA | 1..498 | 1..498 | 2630 | 100 | Plus |
| CG4825-PB | 497 | CG4825-PB | 1..497 | 1..498 | 2613 | 99.8 | Plus |
