Clone Sequence Records
BO05429.3prime Sequence
920 bp (846 high quality bases) assembled on 2005-12-02
> BO05429.3prime
ATGGTCTAGAAAGCTTGCCTGCGCCTTGGCCTTGCGCAGATAGGCTGCCT
GATCCTCGCCAGCGCCGATGAACTTGGAGCTCTCGCTGGCCTGCTGGGGG
CTGCTCGACTGCTTGACCACATTCTGGGCTGCCAGGGAGGCGGCCATGCG
CCGGCTCTTGTGACCACCGGGCGCCAGGTACGCCTTGTAGAAGAAGCGCG
CGAACAGGACAAAGTAGCTGGAGTACATGGCGATCGACAGATTGATGTTG
CGCTGCGAGATGTGACAGGAGGAGGTGCCGTGCGTCTTCAGGAAGCCATT
GGCCCACACGTTGATCGCACATCCGATGATCATCTGAGCCAGCTGCAGCG
ACGTGATGATCATCGAGATGAACCTGGGCGGATTGAAGCGGGCCGCCTTC
AGAGCATAGTAGCTGTACATCACCGAGTGCACGCAGTAGTTCATCACGAT
GAACCAGCGGGCAGAGCTGGTATATTCCGTATAGCTGAACCACGAGTAGA
TCAGCACGGTGATGTGGTGATACCAGTGCAAAAAGATGAGTGGCTGCTTG
CGGAGCACAATGAATATCGTGTCGCCCAGCTCCGGCAGTTTGCTGAGCAC
GAAGAGCCAGGTCCAGAAGCCGCACACGCGATCTTGCTCGATGTAGCTGG
GCACGCAGACGGAGTGGAAGAGTCCGTAGTGACGCAGCACGTGAATCAGC
TCCGGCGCCGTTCGGGCAGCACCCATGATGCTGAACATGGCCAGCAAGGT
GTTCCATATGATCAGCGGGCCGCGCAATTGGAATCTAGGCCGATTTTGCA
TAAAGTGCTGACCACCGAAGATGACCAGCATGTAGATGCCGCAGTAGTAG
AACACCCATGTCCAGTTCTCTAGCATCCATTTGCGCGTCCGCTGGTGTAT
GAAATCGTTCTCGAAGTCGA
BO05429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3971-PA | 951 | Baldspot-RA | 47..948 | 920..19 | 4510 | 100 | Minus |
| CG3971-PB | 951 | Baldspot-RB | 47..948 | 920..19 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Baldspot-RB | 2445 | CG3971-RB | 307..1208 | 920..19 | 4510 | 100 | Minus |
| Baldspot-RA | 2784 | CG3971-RA | 247..1148 | 920..19 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16650078..16650587 | 19..528 | 2535 | 99.8 | Plus |
| 3L | 28110227 | 3L | 16651398..16651537 | 647..786 | 700 | 100 | Plus |
| 3L | 28110227 | 3L | 16659230..16659365 | 785..920 | 680 | 100 | Plus |
| 3L | 28110227 | 3L | 16651130..16651258 | 521..649 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:17:42 has no hits.
BO05429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:52 Download gff for
BO05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3971-PA | 48..951 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:30 Download gff for
BO05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3971-PB | 48..951 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:37 Download gff for
BO05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RA | 248..1151 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:20 Download gff for
BO05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RA | 248..1151 | 15..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:20 Download gff for
BO05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16650074..16650582 | 15..523 | 99 | <- | Plus |
| 3L | 16651133..16651255 | 524..646 | 100 | <- | Plus |
| 3L | 16651398..16651535 | 647..784 | 100 | <- | Plus |
| 3L | 16659230..16659364 | 785..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:37 Download gff for
BO05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16643174..16643682 | 15..523 | 99 | <- | Plus |
| arm_3L | 16644233..16644355 | 524..646 | 100 | <- | Plus |
| arm_3L | 16644498..16644635 | 647..784 | 100 | <- | Plus |
| arm_3L | 16652330..16652464 | 785..919 | 100 | | Plus |
BO05429.5prime Sequence
943 bp (835 high quality bases) assembled on 2005-12-02
> BO05429.5prime
GAAGTTATCAGTCGACATGATCAACATGGACATTAGCGTTACGCCCAATT
ACTCGTACATCTTCGACTTCGAGAACGATTTCATACACCAGCGGACGCGC
AAATGGATGCTAGAGAACTGGACATGGGTGTTCTACTACTGCGGCATCTA
CATGCTGGTCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGAT
TCCAATTGCGCGGCCCGCTGATCATATGGAACACCTTGCTGGCCATGTTC
AGCATCATGGGTGCTGCCCGAACGGCGCCGGAGCTGATTCACGTGCTGCG
TCACTACGGACTCTTCCACTCCGTCTGCGTGCCCAGCTACATCGAGCAAG
ATCGCGTGTGCGGCTTCTGGACCTGGCTCTTCGTGCTCAGCAAACTGCCG
GAGCTGGGCGACACGATATTCATTGTGCTCCGCAAGCAGCCACTCATCTT
TTTGCACTGGTATCACCACATCACCGTGCTGATCTACTCGTGGTTCAGCT
ATACGGAATATACCAGCTCTGCCCGCTGGTTCATCGTGATGAACTACTGC
GTGCACTCGGTGATGTACAGCTACTATGCTCTGAAGGCGGCCCGCTTCAA
TCCGCCCAGGTTCATCTCGATGATCATCACGTCGCTGCAGCTGGCTCAGA
TGATCATCGGATGTGCGATCAACGTGTGGGCCAATGGCTTCCTGAAGACG
CACGGCACCTCCTCCTGTCACATCTCGCAGCGCAACATCAATCTGTCGAT
CGCCATGTACTCCAGCTACTTTGTCCTGTTCGCGCGCTTCTTCTACAAGG
CGTACCTGGCGCCCGGTGGTCACAAGAGCCGGCGCATGGCCGCCTCCCTG
GCAGCCCAGAATGTGGTCAAGCAGTCGAGCAGCCCCCAGCAGGCCAGCGA
GAGCTCAAGTTCATCGGCGCTGGCGAGGATCAGGCAGCCTATC
BO05429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3971-PA | 951 | Baldspot-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
| CG3971-PB | 951 | Baldspot-RB | 1..890 | 17..906 | 4450 | 100 | Plus |
| CG3971-PA | 951 | Baldspot-RA | 891..928 | 906..943 | 190 | 100 | Plus |
| CG3971-PB | 951 | Baldspot-RB | 891..928 | 906..943 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Baldspot-RB | 2445 | CG3971-RB | 261..1188 | 17..943 | 4615 | 99.9 | Plus |
| Baldspot-RA | 2784 | CG3971-RA | 201..1128 | 17..943 | 4615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16650098..16650587 | 943..455 | 2385 | 99.6 | Minus |
| 3L | 28110227 | 3L | 16659230..16659411 | 198..17 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 16651398..16651537 | 336..197 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 16651130..16651258 | 462..334 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:52:21 has no hits.
BO05429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:53 Download gff for
BO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3971-PA | 1..928 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:32 Download gff for
BO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3971-PB | 1..928 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:55 Download gff for
BO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RA | 194..1128 | 9..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:27 Download gff for
BO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RA | 194..1128 | 9..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:27 Download gff for
BO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16650098..16650582 | 460..943 | 99 | <- | Minus |
| 3L | 16651133..16651255 | 337..459 | 100 | <- | Minus |
| 3L | 16651398..16651535 | 199..336 | 100 | <- | Minus |
| 3L | 16659230..16659418 | 9..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:55 Download gff for
BO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16643198..16643682 | 460..943 | 99 | <- | Minus |
| arm_3L | 16644233..16644355 | 337..459 | 100 | <- | Minus |
| arm_3L | 16644498..16644635 | 199..336 | 100 | <- | Minus |
| arm_3L | 16652330..16652518 | 9..198 | 97 | | Minus |
BO05429.complete Sequence
982 bp (982 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630032
> BO05429.complete
GAAGTTATCAGTCGACATGATCAACATGGACATTAGCGTTACGCCCAATT
ACTCGTACATCTTCGACTTCGAGAACGATTTCATACACCAGCGGACGCGC
AAATGGATGCTAGAGAACTGGACATGGGTGTTCTACTACTGCGGCATCTA
CATGCTGGTCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGAT
TCCAATTGCGCGGCCCGCTGATCATATGGAACACCTTGCTGGCCATGTTC
AGCATCATGGGTGCTGCCCGAACGGCGCCGGAGCTGATTCACGTGCTGCG
TCACTACGGACTCTTCCACTCCGTCTGCGTGCCCAGCTACATCGAGCAAG
ATCGCGTGTGCGGCTTCTGGACCTGGCTCTTCGTGCTCAGCAAACTGCCG
GAGCTGGGCGACACGATATTCATTGTGCTCCGCAAGCAGCCACTCATCTT
TTTGCACTGGTATCACCACATCACCGTGCTGATCTACTCGTGGTTCAGCT
ATACGGAATATACCAGCTCTGCCCGCTGGTTCATCGTGATGAACTACTGC
GTGCACTCGGTGATGTACAGCTACTATGCTCTGAAGGCGGCCCGCTTCAA
TCCGCCCAGGTTCATCTCGATGATCATCACGTCGCTGCAGCTGGCTCAGA
TGATCATCGGATGTGCGATCAACGTGTGGGCCAATGGCTTCCTGAAGACG
CACGGCACCTCCTCCTGTCACATCTCGCAGCGCAACATCAATCTGTCGAT
CGCCATGTACTCCAGCTACTTTGTCCTGTTCGCGCGCTTCTTCTACAAGG
CGTACCTGGCGCCCGGTGGTCACAAGAGCCGGCGCATGGCCGCCTCCCTG
GCAGCCCAGAATGTGGTCAAGCAGTCGAGCAGCCCCCAGCAGGCCAGCGA
GAGCTCCAAGTTCATCGGCGCTGGCGAGGATCAGGCAGCCTATCTGCGCA
AGGCCAAGGCGCAGGCAAGCTTTCTAGACCAT
BO05429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Baldspot-RB | 951 | CG3971-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
| Baldspot-RA | 951 | CG3971-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Baldspot-RB | 2445 | CG3971-RB | 261..1208 | 17..964 | 4740 | 100 | Plus |
| Baldspot-RA | 2784 | CG3971-RA | 201..1148 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16650078..16650587 | 964..455 | 2535 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16659230..16659411 | 198..17 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 16651398..16651537 | 336..197 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 16651130..16651258 | 462..334 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:22:04 has no hits.
BO05429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:44 Download gff for
BO05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RB | 1..951 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:02 Download gff for
BO05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RB | 266..1223 | 9..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:51 Download gff for
BO05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RA | 201..1148 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:45 Download gff for
BO05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RB | 266..1223 | 9..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:12 Download gff for
BO05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RA | 201..1148 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:12 Download gff for
BO05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16651398..16651535 | 199..336 | 100 | <- | Minus |
| 3L | 16650076..16650582 | 460..966 | 99 | <- | Minus |
| 3L | 16651133..16651255 | 337..459 | 100 | <- | Minus |
| 3L | 16659230..16659411 | 17..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:51 Download gff for
BO05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16643176..16643682 | 460..966 | 99 | <- | Minus |
| arm_3L | 16644233..16644355 | 337..459 | 100 | <- | Minus |
| arm_3L | 16644498..16644635 | 199..336 | 100 | <- | Minus |
| arm_3L | 16652330..16652511 | 17..198 | 100 | | Minus |
BO05429.pep Sequence
Translation from 16 to 982
> BO05429.pep
MINMDISVTPNYSYIFDFENDFIHQRTRKWMLENWTWVFYYCGIYMLVIF
GGQHFMQNRPRFQLRGPLIIWNTLLAMFSIMGAARTAPELIHVLRHYGLF
HSVCVPSYIEQDRVCGFWTWLFVLSKLPELGDTIFIVLRKQPLIFLHWYH
HITVLIYSWFSYTEYTSSARWFIVMNYCVHSVMYSYYALKAARFNPPRFI
SMIITSLQLAQMIIGCAINVWANGFLKTHGTSSCHISQRNINLSIAMYSS
YFVLFARFFYKAYLAPGGHKSRRMAASLAAQNVVKQSSSPQQASESSKFI
GAGEDQAAYLRKAKAQASFLDH
BO05429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Baldspot-PB | 316 | CG3971-PB | 1..316 | 1..316 | 1696 | 100 | Plus |
| Baldspot-PA | 316 | CG3971-PA | 1..316 | 1..316 | 1696 | 100 | Plus |
| bond-PC | 322 | CG6921-PC | 50..309 | 52..310 | 204 | 25.5 | Plus |
| bond-PA | 322 | CG6921-PA | 50..309 | 52..310 | 204 | 25.5 | Plus |
| bond-PB | 322 | CG6921-PB | 50..309 | 52..310 | 204 | 25.5 | Plus |
