Clone Sequence Records
BO05430.3prime Sequence
940 bp (883 high quality bases) assembled on 2005-12-02
> BO05430.3prime
ATGGTCTAGAAAGCTTGCGATCAGAACCTGTGCACGATAGTGCTTCTGCA
GCTTATTGGCCTTGCAGCCGAGCTTCATCTGCCACTTGGACTGGACGCGC
TTCATCAGATGAATGTCGCGTGCCTTGCGGGCGGCGGACAGCTGCTGCGT
TTGCGTCCAGCCCAGAGCCCGGTACTCGCTGAGCACGCGGTGCAGTTTGC
GGTCGGACTTCTTGATGACGACGGCGCGTTCCGGACGAAGACGCTGCTTG
TAGTAGCGAAGCAGGGAGCGATGACCAATGACCGCGCCTGAGGGCAGCAC
CAGCTGATACTCATCGCCATCGAGCAGATCCGGCACCACCTCTTCGTCAA
TGTCCATGCCCTCATTATTGTCCGGATAACTGCTGCTGTAGTCGTAGTAT
TCGGCATACTCGGCCAGCGCCACACCCTCGTGCAGCATCTGGCAGTGGCC
CTTGTCGATCATGTGTTTGCGCACGGCGTCCAGGGAATAGAAGGTCTTGC
CGCGATCGTTGCAGAACAGGCAGATGAAGTAGTTGGCCACCTTCTCGCCC
AGGTAGTACAGAAGGCCCTCGATGTCCGTGCAGTACTCGGTGTCCGGAAT
GAAGAACGAGTGCGCCACGGACATGTGCTTTAGGTTCTCCACCAGATCCT
CGCTGGCATGTGTGCAGAACAGGCAGTCGCGCTCGGTCAGCGGATTCTCG
GGTATCTTGTCCCACTCATCGGAATCCACCTCCTCCTCTTCAATGTCCTC
GAAATCATCGTCGTCCTCGTCGACCATCTCCTCGTCGTTATTGGCCTTGA
CCACCCGCTCCGCGAAGGCCAGTCGACCCTTGCCAGCGGCTGCGGCGGCC
AGGGCCGGATGGGGCCGCTGCTCCACGACGCTGCGCGTGCACACGGATGT
GGCGGTGCTGGCGCTGCCGCCGCTAGCTGTCATCTGCTCG
BO05430.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-PA | 1230 | CG6769-RA | 306..1227 | 940..19 | 4610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-RB | 1543 | CG6769-RB | 468..1389 | 940..19 | 4610 | 100 | Minus |
CG6769-RA | 1468 | CG6769-RA | 468..1389 | 940..19 | 4610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17861836..17862200 | 731..367 | 1825 | 100 | Minus |
X | 23542271 | X | 17862274..17862621 | 366..19 | 1740 | 100 | Minus |
X | 23542271 | X | 17861469..17861681 | 940..728 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:52:34 has no hits.
BO05430.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:54 Download gff for
BO05430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-PA | 306..1230 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:33 Download gff for
BO05430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-PA | 306..1230 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:09 Download gff for
BO05430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 468..1392 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:29 Download gff for
BO05430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 468..1392 | 15..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:29 Download gff for
BO05430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17862274..17862624 | 15..366 | 99 | | Minus |
X | 17861469..17861679 | 730..940 | 100 | -> | Minus |
X | 17861838..17862200 | 367..729 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:09 Download gff for
BO05430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17755502..17755712 | 730..940 | 100 | -> | Minus |
arm_X | 17755871..17756233 | 367..729 | 100 | -> | Minus |
arm_X | 17756307..17756657 | 15..366 | 99 | | Minus |
BO05430.5prime Sequence
915 bp (833 high quality bases) assembled on 2005-11-29
> BO05430.5prime
GAAGTTATCAGTCGACATGTCGCACTTCACCTGCCTGAACTGCGATGCCC
GCTTCGCCAGCGCGGATGTGCAGCGGAATCACTACAAGACCGACTGGCAT
CGCTACAATCTGAAGCGCAGGGTGGCCCAGCTGCCGCCCGTTACGGCCGA
GGAGTTCCAGCAGCGCGTTCTTAGCGCCCGCAGCGCCACGGACGCGGCAC
TCGAGGAGCAGAACCTAAGTGTCTACTGCCACGCCTGCAGACGCCAATTC
GCCAGCCAGAAGGCGCACGACAACCACCTGAACAGCCGCAAGCACAAGGA
GCTGCTGGCCCGCTTCGAGCGCGAGCAGATGACAGCTAGCGGCGGCAGCG
CCAGCACCGCCACATCCGTGTGCACGCGCAGCGTCGTGGAGCAGCGGCCC
CATCCGGCCCTGGCCGCCGCAGCCGCTGGCAAGGGTCGACTGGCCTTCGC
GGAGCGGGTGGTCAAGGCCAATAACGACGAGGAGATGGTCGACGAGGACG
ACGATGATTTCGAGGACATTGAAGAGGAGGAGGTGGATTCCGATGAGTGG
GACAAGATACCCGAGAATCCGCTGACCGAGCGCGACTGCCTGTTCTGCAC
ACATGCCAGCGAGGATCTGGTGGAGAACCTAAAGCACATGTCCGTGGCGC
ACTCGTTCTTCATTCCGGACACCGAGTACTGCACGGACATCGAGGGCCTT
CTGTACTACCTGGGCGAGAAGGTGGCCAACTACTTCATCTGCCTGTTCTG
CAACGATCGCGGCAAGACCTTCTATTCCCTGGACGCCGTGCGCAAACACA
TGATCGACAAGGGCCACTGCCAGATGCTGCACGAGGGTGTGGCGCTGGCC
GAGTATGCCGAATACTACGACTACAGCAGCAGTTATCCGGACNATAATGA
GGGCATGGACATTGA
BO05430.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-PA | 1230 | CG6769-RA | 1..899 | 17..915 | 4476 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-RB | 1543 | CG6769-RB | 163..1061 | 17..915 | 4484 | 99.9 | Plus |
CG6769-RA | 1468 | CG6769-RA | 163..1061 | 17..915 | 4484 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17861164..17861681 | 17..534 | 2590 | 100 | Plus |
X | 23542271 | X | 17861836..17862197 | 531..892 | 1810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:50:20 has no hits.
BO05430.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:21:55 Download gff for
BO05430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:34 Download gff for
BO05430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:50 Download gff for
BO05430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 152..1060 | 8..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:09 Download gff for
BO05430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 152..1060 | 8..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:09 Download gff for
BO05430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17861153..17861679 | 8..532 | 99 | -> | Plus |
X | 17861838..17862200 | 533..895 | 99 | -> | Plus |
X | 17862274..17862292 | 896..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:50 Download gff for
BO05430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17755186..17755712 | 8..532 | 99 | -> | Plus |
arm_X | 17755871..17756233 | 533..895 | 99 | -> | Plus |
arm_X | 17756307..17756325 | 896..914 | 100 | | Plus |
BO05430.complete Sequence
1261 bp (1261 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630033
> BO05430.complete
GAAGTTATCAGTCGACATGTCGCACTTCACCTGCCTGAACTGCGATGCCC
GCTTCGCCAGCGCGGATGTGCAGCGGAATCACTACAAGACCGACTGGCAT
CGCTACAATCTGAAGCGCAGGGTGGCCCAGCTGCCGCCCGTTACGGCCGA
GGAGTTCCAGCAGCGCGTTCTTAGCGCCCGCAGCGCCACGGACGCGGCAC
TCGAGGAGCAGAACCTAAGTGTCTACTGCCACGCCTGCAGACGCCAATTC
GCCAGCCAGAAGGCGCACGACAACCACCTGAACAGCCGCAAGCACAAGGA
GCTGCTGGCCCGCTTCGAGCGCGAGCAGATGACAGCTAGCGGCGGCAGCG
CCAGCACCGCCACATCCGTGTGCACGCGCAGCGTCGTGGAGCAGCGGCCC
CATCCGGCCCTGGCCGCCGCAGCCGCTGGCAAGGGTCGACTGGCCTTCGC
GGAGCGGGTGGTCAAGGCCAATAACGACGAGGAGATGGTCGACGAGGACG
ACGATGATTTCGAGGACATTGAAGAGGAGGAGGTGGATTCCGATGAGTGG
GACAAGATACCCGAGAATCCGCTGACCGAGCGCGACTGCCTGTTCTGCAC
ACATGCCAGCGAGGATCTGGTGGAGAACCTAAAGCACATGTCCGTGGCGC
ACTCGTTCTTCATTCCGGACACCGAGTACTGCACGGACATCGAGGGCCTT
CTGTACTACCTGGGCGAGAAGGTGGCCAACTACTTCATCTGCCTGTTCTG
CAACGATCGCGGCAAGACCTTCTATTCCCTGGACGCCGTGCGCAAACACA
TGATCGACAAGGGCCACTGCCAGATGCTGCACGAGGGTGTGGCGCTGGCC
GAGTATGCCGAATACTACGACTACAGCAGCAGTTATCCGGACAATAATGA
GGGCATGGACATTGACGAAGAGGTGGTGCCGGATCTGCTCGATGGCGATG
AGTATCAGCTGGTGCTGCCCTCAGGCGCGGTCATTGGTCATCGCTCCCTG
CTTCGCTACTACAAGCAGCGTCTTCGTCCGGAACGCGCCGTCGTCATCAA
GAAGTCCGACCGCAAACTGCACCGCGTGCTCAGCGAGTACCGGGCTCTGG
GCTGGACGCAAACGCAGCAGCTGTCCGCCGCCCGCAAGGCACGCGACATT
CATCTGATGAAGCGCGTCCAGTCCAAGTGGCAGATGAAGCTCGGCTGCAA
GGCCAATAAGCTGCAGAAGCACTATCGTGCACAGGTTCTGATCGCAAGCT
TTCTAGACCAT
BO05430.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-RB | 1230 | CG6769-PB | 1..1227 | 17..1243 | 6135 | 100 | Plus |
CG6769-RA | 1230 | CG6769-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-RB | 1543 | CG6769-RB | 163..1389 | 17..1243 | 6135 | 100 | Plus |
CG6769-RA | 1468 | CG6769-RA | 163..1389 | 17..1243 | 6135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17861164..17861681 | 17..534 | 2590 | 100 | Plus |
X | 23542271 | X | 17861836..17862200 | 531..895 | 1825 | 100 | Plus |
X | 23542271 | X | 17862274..17862621 | 896..1243 | 1740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:42:27 has no hits.
BO05430.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:46 Download gff for
BO05430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 1..1230 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:04 Download gff for
BO05430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 226..1466 | 8..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:25 Download gff for
BO05430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 163..1389 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:46 Download gff for
BO05430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 226..1466 | 8..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:13 Download gff for
BO05430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 163..1389 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:13 Download gff for
BO05430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17862274..17862621 | 896..1245 | 99 | | Plus |
X | 17861838..17862200 | 533..895 | 100 | -> | Plus |
X | 17861164..17861679 | 17..532 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:25 Download gff for
BO05430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17755871..17756233 | 533..895 | 100 | -> | Plus |
arm_X | 17756307..17756654 | 896..1245 | 99 | | Plus |
arm_X | 17755197..17755712 | 17..532 | 100 | -> | Plus |
BO05430.pep Sequence
Translation from 16 to 1261
> BO05430.pep
MSHFTCLNCDARFASADVQRNHYKTDWHRYNLKRRVAQLPPVTAEEFQQR
VLSARSATDAALEEQNLSVYCHACRRQFASQKAHDNHLNSRKHKELLARF
EREQMTASGGSASTATSVCTRSVVEQRPHPALAAAAAGKGRLAFAERVVK
ANNDEEMVDEDDDDFEDIEEEEVDSDEWDKIPENPLTERDCLFCTHASED
LVENLKHMSVAHSFFIPDTEYCTDIEGLLYYLGEKVANYFICLFCNDRGK
TFYSLDAVRKHMIDKGHCQMLHEGVALAEYAEYYDYSSSYPDNNEGMDID
EEVVPDLLDGDEYQLVLPSGAVIGHRSLLRYYKQRLRPERAVVIKKSDRK
LHRVLSEYRALGWTQTQQLSAARKARDIHLMKRVQSKWQMKLGCKANKLQ
KHYRAQVLIASFLDH
BO05430.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-PB | 409 | CG6769-PB | 1..409 | 1..409 | 2163 | 100 | Plus |
CG6769-PA | 409 | CG6769-PA | 1..409 | 1..409 | 2163 | 100 | Plus |