Clone BO05437 Report

Search the DGRC for BO05437

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:37
Vector:pDNR-Dual
Associated Gene/Transcriptns4-RA
Protein status:BO05437.pep: validated full length
Sequenced Size:1759

Clone Sequence Records

BO05437.3prime Sequence

935 bp (895 high quality bases) assembled on 2005-12-02

> BO05437.3prime
ATGGTCTAGAAAGCTTGCATCGTCCTCCAGCAGAGCAAACACGTTCCGAG
ACCTGGGTGCGTCTTCCCTGATGCCACATTCCTCCTCATCAGCATTGGTC
TCGTCATTGGAGCTGTCCTCGTCTTCATCCTCGCTGTCGGCAGTATCCGA
GCAGACGGATGATGTGTCGCCGTTGGTCTCGCTCTCCGGCTCATCTAATT
CGACTTGCTGGTACTTCTTGACCTCCCCCACATCGGGATGTTGGAGCCAG
TGCTCACGTCGCTCCTCAAATCCGGGCGGATAAAACTGCAATACCAACAT
CTGTTGGCCGGCCAGGCACATGCGAAGGATATGATTCGCGGCCCGGTAGC
GATCCGGCCTGGCTGCCTTGGCGGTGAGGAATCCCCTCTTATATGCCCAA
GCATCGGAGATGGCCACCGCAGACCACTCATCGTAATCCTCGGGCAGGTG
GAGACGCAGAAGCTGTGGTAGATTCAGATGTTCGCCGAGAAACTTCAGGG
AGCGGTATGGAACAGCCAGTTGCGATATGGGGAAACTGCCCAGCAGCACT
TGCAGGCTTTTGGGAGTACTCGAGGGAAAGACTAGACCGGGACAATCACA
GAGGCGAACAAGTGGGGTGAGGAAAATTGTCTGAAAGTGCTTCGTATGTC
CGGGCGTGCGACTAACGCTGACCACCTTGCGTCCCTTTAAGGCATTGATC
AGCGACGACTTTCCGACATTGGGAAATCCAATGCAGCCAATGGTCAGGAC
CCCACTGTGATATTTAACGTGCTCGTGGGGCGTGGTGTCGATGCTGCTGC
TGATCTTGAGTTCACCCTCCACGGCCGTTGATATTTCATCCAGGATGTCA
AGCTGATCACTACGCATGTCCTCTCGTATCTTCTGCTCCCAGGTTGTTAG
ATCCACCTCTCCTTGGACATAGCGCTGGGCATCCC

BO05437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9320-PA 1728 CG9320-RA 816..1725 928..19 4550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-RA 1961 CG9320-RA 952..1861 928..19 4550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20753581..20754365 928..144 3925 100 Minus
2L 23513712 2L 20754431..20754555 143..19 625 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:19:00 has no hits.

BO05437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:02 Download gff for BO05437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9320-PA 810..1728 15..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:45 Download gff for BO05437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9320-PA 810..1728 15..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:00 Download gff for BO05437.3prime
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 946..1869 11..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:44 Download gff for BO05437.3prime
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 946..1869 11..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:44 Download gff for BO05437.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20754431..20754563 11..143 97   Minus
2L 20753575..20754365 144..935 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:00 Download gff for BO05437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20753575..20754365 144..935 99 -> Minus
arm_2L 20754431..20754563 11..143 97   Minus

BO05437.5prime Sequence

844 bp (801 high quality bases) assembled on 2005-12-02

> BO05437.5prime
GAAGTTATCAGTCGACATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCG
GCAAGAAGAAGAAGGACCAGATGTTGCAAAAGCGCAACACAAAAGGTCCC
CCAAAGTATCTGAGGAGCACGCAGGAGTCGTATGAGGACAGCGATGTGCC
GGAAACGACCAGGAAACTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACC
GAAACAAGAACGTCAATCGCTATAATTTGCAATTCTACCAGGAGGGCAAA
AAGGAACTGGAGCAAATGAAACAAGAGGGCTTTAAACCGTTCGAGAAACT
CAGTCCCGCTCAGCGGGAAGTGGACGACCGATACTTTGCCGGCTGCGACT
TCCCAGTTCGTCCACCTTGGACGCTAACGGAGTCCAAGGAAGAGCTTGAT
CGCACCGAGAATCGCTACTTTAAGGAATACGTGGACGAGCTGCAGAAAAA
GCAGCGTGCTGGAGATTCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGG
AAACCTGGCGTCAGCTATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTG
ATCATTGTGGACGTGCGCTATGCCACGCTGATGTTTCCACCCTCCCTGTA
CGACTATATTATCAACACGCTAAAGAAACATGCGATAGTGGTGTTCAACA
AGGTGGATCTAGTCGAACCGCATGCGGTGGTGGCTTGGAGGCAATACTTC
CGCGACCGTTACCCCCAGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCC
CCGATCCCGCAAAGGAAGTCAACGTGGTCCACAGGCTCATCGCANGAGTA
TGGAAGGAGTGTATAATATCTACAAGGAATGCCAGCGCTATGTC

BO05437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9320-PA 1728 CG9320-RA 1..828 17..844 4121 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-RA 1961 CG9320-RA 137..964 17..844 4129 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20753172..20753593 423..844 2099 99.8 Plus
2L 23513712 2L 20752779..20753110 94..425 1660 100 Plus
2L 23513712 2L 20752612..20752692 17..97 405 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:41:32 has no hits.

BO05437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:02 Download gff for BO05437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9320-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:46 Download gff for BO05437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9320-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:41 Download gff for BO05437.5prime
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 137..964 17..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:55 Download gff for BO05437.5prime
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 137..964 17..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:55 Download gff for BO05437.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20752612..20752690 17..95 100 -> Plus
2L 20752781..20753109 96..424 100 -> Plus
2L 20753174..20753593 425..844 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:41 Download gff for BO05437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20752612..20752690 17..95 100 -> Plus
arm_2L 20752781..20753109 96..424 100 -> Plus
arm_2L 20753174..20753593 425..844 99   Plus

BO05437.complete Sequence

1759 bp (1759 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630034

> BO05437.complete
GAAGTTATCAGTCGACATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCG
GCAAGAAGAAGAAGGACCAGATGTTGCAAAAGCGCAACACAAAAGGTCCC
CCAAAGTATCTGAGGAGCACGCAGGAGTCGTATGAGGACAGCGATGTGCC
GGAAACGACCAGGAAACTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACC
GAAACAAGAACGTCAATCGCTATAATTTGCAATTCTACCAGGAGGGCAAA
AAGGAACTGGAGCAAATGAAACAAGAGGGCTTTAAACCGTTCGAGAAACT
CAGTCCCGCTCAGCGGGAAGTGGACGACCGATACTTTGCCGGCTGCGACT
TCCCAGTTCGTCCACCTTGGACGCTAACGGAGTCCAAGGAAGAGCTTGAT
CGCACCGAGAATCGCTACTTTAAGGAATACGTGGACGAGCTGCAGAAAAA
GCAGCGTGCTGGAGATTCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGG
AAACCTGGCGTCAGCTATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTG
ATCATTGTGGACGTGCGCTATGCCACGCTGATGTTTCCACCCTCCCTGTA
CGACTATATTATCAACACGCTAAAGAAACATGCGATAGTGGTGTTCAACA
AGGTGGATCTAGTCGAACCGCATGCGGTGGTGGCTTGGAGGCAATACTTC
CGCGACCGTTACCCCCAGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCC
CCGATCCCGCAAAGGAAGTCAACGTGGTCCACAGGCTCATCGCAGGAGTA
TGGAAGGAGTGTATAATATCTACAAGGAATGCCAGCGCTATGTCCAAGGA
GAGGTGGATCTAACAACCTGGGAGCAGAAGATACGAGAGGACATGCGTAG
TGATCAGCTTGACATCCTGGATGAAATATCAACGGCCGTGGAGGGTGAAC
TCAAGATCAGCAGCAGCATCGACACCACGCCCCACGAGCACGTTAAATAT
CACAGTGGGGTCCTGACCATTGGCTGCATTGGATTTCCCAATGTCGGAAA
GTCGTCGCTGATCAATGCCTTAAAGGGACGCAAGGTGGTCAGCGTTAGTC
GCACGCCCGGACATACGAAGCACTTTCAGACAATTTTCCTCACCCCACTT
GTTCGCCTCTGTGATTGTCCCGGTCTAGTCTTTCCCTCGAGTACTCCCAA
AAGCCTGCAAGTGCTGCTGGGCAGTTTCCCCATATCGCAACTGGCTGTTC
CATACCGCTCCCTGAAGTTTCTCGGCGAACATCTGAATCTACCACAGCTT
CTGCGTCTCCACCTGCCCGAGGATTACGATGAGTGGTCTGCGGTGGCCAT
CTCCGATGCTTGGGCATATAAGAGGGGATTCCTCACCGCCAAGGCAGCCA
GGCCGGATCGCTACCGGGCCGCGAATCATATCCTTCGCATGTGCCTGGCC
GGCCAACAGATGTTGGTATTGCAGTTTTATCCGCCCGGATTTGAGGAGCG
ACGTGAGCACTGGCTCCAACATCCCGATGTGGGGGAGGTCAAGAAGTACC
AGCAAGTCGAATTAGATGAGCCGGAGAGCGAGACCAACGGCGACACATCA
TCCGTCTGCTCGGATACTGCCGACAGCGAGGATGAAGACGAGGACAGCTC
CAATGACGAGACCAATGCTGATGAGGAGGAATGTGGCATCAGGGAAGACG
CACCCAGGTCTCGGAACGTGTTTGCTCTGCTGGAGGACGATGCAAGCTTT
CTAGACCAT

BO05437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-RA 1728 CG9320-PA 1..1725 17..1741 8625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-RA 1961 CG9320-RA 137..1861 17..1741 8625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20753172..20754365 423..1616 5970 100 Plus
2L 23513712 2L 20752779..20753110 94..425 1660 100 Plus
2L 23513712 2L 20754431..20754555 1617..1741 625 100 Plus
2L 23513712 2L 20752612..20752692 17..97 405 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:01:34 has no hits.

BO05437.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:50 Download gff for BO05437.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 1..1728 17..1745 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:54 Download gff for BO05437.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 213..1945 17..1749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:00 Download gff for BO05437.complete
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 137..1861 17..1743 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:50 Download gff for BO05437.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 213..1945 17..1749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:09 Download gff for BO05437.complete
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 137..1861 17..1743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:09 Download gff for BO05437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20752612..20752690 17..95 100 -> Plus
2L 20752781..20753109 96..424 100 -> Plus
2L 20753174..20754365 425..1616 100 -> Plus
2L 20754431..20754555 1617..1743 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:00 Download gff for BO05437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20752612..20752690 17..95 100 -> Plus
arm_2L 20754431..20754555 1617..1743 98   Plus
arm_2L 20752781..20753109 96..424 100 -> Plus
arm_2L 20753174..20754365 425..1616 100 -> Plus

BO05437.pep Sequence

Translation from 16 to 1759

> BO05437.pep
MPQQRRKVAFSGKKKKDQMLQKRNTKGPPKYLRSTQESYEDSDVPETTRK
LMEQPFARGGNRNKNVNRYNLQFYQEGKKELEQMKQEGFKPFEKLSPAQR
EVDDRYFAGCDFPVRPPWTLTESKEELDRTENRYFKEYVDELQKKQRAGD
SKELSLFELNLETWRQLWRVLEFSDILLIIVDVRYATLMFPPSLYDYIIN
TLKKHAIVVFNKVDLVEPHAVVAWRQYFRDRYPQLPVVLFASFLPRSRKG
SQRGPQAHRRSMEGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDI
LDEISTAVEGELKISSSIDTTPHEHVKYHSGVLTIGCIGFPNVGKSSLIN
ALKGRKVVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPSSTPKSLQVL
LGSFPISQLAVPYRSLKFLGEHLNLPQLLRLHLPEDYDEWSAVAISDAWA
YKRGFLTAKAARPDRYRAANHILRMCLAGQQMLVLQFYPPGFEERREHWL
QHPDVGEVKKYQQVELDEPESETNGDTSSVCSDTADSEDEDEDSSNDETN
ADEEECGIREDAPRSRNVFALLEDDASFLDH

BO05437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-PA 575 CG9320-PA 1..575 1..575 3034 100 Plus
Ns3-PB 606 CG14788-PB 115..510 113..498 392 32.4 Plus
Ns3-PA 606 CG14788-PA 115..510 113..498 392 32.4 Plus
Ns1-PA 581 CG3983-PA 121..424 140..494 177 24.2 Plus
Ns2-PA 674 CG6501-PA 316..509 333..540 174 28.1 Plus