Clone Sequence Records
BO05437.3prime Sequence
935 bp (895 high quality bases) assembled on 2005-12-02
> BO05437.3prime
ATGGTCTAGAAAGCTTGCATCGTCCTCCAGCAGAGCAAACACGTTCCGAG
ACCTGGGTGCGTCTTCCCTGATGCCACATTCCTCCTCATCAGCATTGGTC
TCGTCATTGGAGCTGTCCTCGTCTTCATCCTCGCTGTCGGCAGTATCCGA
GCAGACGGATGATGTGTCGCCGTTGGTCTCGCTCTCCGGCTCATCTAATT
CGACTTGCTGGTACTTCTTGACCTCCCCCACATCGGGATGTTGGAGCCAG
TGCTCACGTCGCTCCTCAAATCCGGGCGGATAAAACTGCAATACCAACAT
CTGTTGGCCGGCCAGGCACATGCGAAGGATATGATTCGCGGCCCGGTAGC
GATCCGGCCTGGCTGCCTTGGCGGTGAGGAATCCCCTCTTATATGCCCAA
GCATCGGAGATGGCCACCGCAGACCACTCATCGTAATCCTCGGGCAGGTG
GAGACGCAGAAGCTGTGGTAGATTCAGATGTTCGCCGAGAAACTTCAGGG
AGCGGTATGGAACAGCCAGTTGCGATATGGGGAAACTGCCCAGCAGCACT
TGCAGGCTTTTGGGAGTACTCGAGGGAAAGACTAGACCGGGACAATCACA
GAGGCGAACAAGTGGGGTGAGGAAAATTGTCTGAAAGTGCTTCGTATGTC
CGGGCGTGCGACTAACGCTGACCACCTTGCGTCCCTTTAAGGCATTGATC
AGCGACGACTTTCCGACATTGGGAAATCCAATGCAGCCAATGGTCAGGAC
CCCACTGTGATATTTAACGTGCTCGTGGGGCGTGGTGTCGATGCTGCTGC
TGATCTTGAGTTCACCCTCCACGGCCGTTGATATTTCATCCAGGATGTCA
AGCTGATCACTACGCATGTCCTCTCGTATCTTCTGCTCCCAGGTTGTTAG
ATCCACCTCTCCTTGGACATAGCGCTGGGCATCCC
BO05437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9320-PA | 1728 | CG9320-RA | 816..1725 | 928..19 | 4550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-RA | 1961 | CG9320-RA | 952..1861 | 928..19 | 4550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20753581..20754365 | 928..144 | 3925 | 100 | Minus |
2L | 23513712 | 2L | 20754431..20754555 | 143..19 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:19:00 has no hits.
BO05437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:02 Download gff for
BO05437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-PA | 810..1728 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:45 Download gff for
BO05437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-PA | 810..1728 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:00 Download gff for
BO05437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 946..1869 | 11..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:44 Download gff for
BO05437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 946..1869 | 11..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:44 Download gff for
BO05437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20754431..20754563 | 11..143 | 97 | | Minus |
2L | 20753575..20754365 | 144..935 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:00 Download gff for
BO05437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20753575..20754365 | 144..935 | 99 | -> | Minus |
arm_2L | 20754431..20754563 | 11..143 | 97 | | Minus |
BO05437.5prime Sequence
844 bp (801 high quality bases) assembled on 2005-12-02
> BO05437.5prime
GAAGTTATCAGTCGACATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCG
GCAAGAAGAAGAAGGACCAGATGTTGCAAAAGCGCAACACAAAAGGTCCC
CCAAAGTATCTGAGGAGCACGCAGGAGTCGTATGAGGACAGCGATGTGCC
GGAAACGACCAGGAAACTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACC
GAAACAAGAACGTCAATCGCTATAATTTGCAATTCTACCAGGAGGGCAAA
AAGGAACTGGAGCAAATGAAACAAGAGGGCTTTAAACCGTTCGAGAAACT
CAGTCCCGCTCAGCGGGAAGTGGACGACCGATACTTTGCCGGCTGCGACT
TCCCAGTTCGTCCACCTTGGACGCTAACGGAGTCCAAGGAAGAGCTTGAT
CGCACCGAGAATCGCTACTTTAAGGAATACGTGGACGAGCTGCAGAAAAA
GCAGCGTGCTGGAGATTCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGG
AAACCTGGCGTCAGCTATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTG
ATCATTGTGGACGTGCGCTATGCCACGCTGATGTTTCCACCCTCCCTGTA
CGACTATATTATCAACACGCTAAAGAAACATGCGATAGTGGTGTTCAACA
AGGTGGATCTAGTCGAACCGCATGCGGTGGTGGCTTGGAGGCAATACTTC
CGCGACCGTTACCCCCAGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCC
CCGATCCCGCAAAGGAAGTCAACGTGGTCCACAGGCTCATCGCANGAGTA
TGGAAGGAGTGTATAATATCTACAAGGAATGCCAGCGCTATGTC
BO05437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9320-PA | 1728 | CG9320-RA | 1..828 | 17..844 | 4121 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-RA | 1961 | CG9320-RA | 137..964 | 17..844 | 4129 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20753172..20753593 | 423..844 | 2099 | 99.8 | Plus |
2L | 23513712 | 2L | 20752779..20753110 | 94..425 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 20752612..20752692 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:41:32 has no hits.
BO05437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:02 Download gff for
BO05437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:46 Download gff for
BO05437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:41 Download gff for
BO05437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 137..964 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:55 Download gff for
BO05437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 137..964 | 17..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:55 Download gff for
BO05437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20752612..20752690 | 17..95 | 100 | -> | Plus |
2L | 20752781..20753109 | 96..424 | 100 | -> | Plus |
2L | 20753174..20753593 | 425..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:41 Download gff for
BO05437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20752612..20752690 | 17..95 | 100 | -> | Plus |
arm_2L | 20752781..20753109 | 96..424 | 100 | -> | Plus |
arm_2L | 20753174..20753593 | 425..844 | 99 | | Plus |
BO05437.complete Sequence
1759 bp (1759 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630034
> BO05437.complete
GAAGTTATCAGTCGACATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCG
GCAAGAAGAAGAAGGACCAGATGTTGCAAAAGCGCAACACAAAAGGTCCC
CCAAAGTATCTGAGGAGCACGCAGGAGTCGTATGAGGACAGCGATGTGCC
GGAAACGACCAGGAAACTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACC
GAAACAAGAACGTCAATCGCTATAATTTGCAATTCTACCAGGAGGGCAAA
AAGGAACTGGAGCAAATGAAACAAGAGGGCTTTAAACCGTTCGAGAAACT
CAGTCCCGCTCAGCGGGAAGTGGACGACCGATACTTTGCCGGCTGCGACT
TCCCAGTTCGTCCACCTTGGACGCTAACGGAGTCCAAGGAAGAGCTTGAT
CGCACCGAGAATCGCTACTTTAAGGAATACGTGGACGAGCTGCAGAAAAA
GCAGCGTGCTGGAGATTCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGG
AAACCTGGCGTCAGCTATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTG
ATCATTGTGGACGTGCGCTATGCCACGCTGATGTTTCCACCCTCCCTGTA
CGACTATATTATCAACACGCTAAAGAAACATGCGATAGTGGTGTTCAACA
AGGTGGATCTAGTCGAACCGCATGCGGTGGTGGCTTGGAGGCAATACTTC
CGCGACCGTTACCCCCAGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCC
CCGATCCCGCAAAGGAAGTCAACGTGGTCCACAGGCTCATCGCAGGAGTA
TGGAAGGAGTGTATAATATCTACAAGGAATGCCAGCGCTATGTCCAAGGA
GAGGTGGATCTAACAACCTGGGAGCAGAAGATACGAGAGGACATGCGTAG
TGATCAGCTTGACATCCTGGATGAAATATCAACGGCCGTGGAGGGTGAAC
TCAAGATCAGCAGCAGCATCGACACCACGCCCCACGAGCACGTTAAATAT
CACAGTGGGGTCCTGACCATTGGCTGCATTGGATTTCCCAATGTCGGAAA
GTCGTCGCTGATCAATGCCTTAAAGGGACGCAAGGTGGTCAGCGTTAGTC
GCACGCCCGGACATACGAAGCACTTTCAGACAATTTTCCTCACCCCACTT
GTTCGCCTCTGTGATTGTCCCGGTCTAGTCTTTCCCTCGAGTACTCCCAA
AAGCCTGCAAGTGCTGCTGGGCAGTTTCCCCATATCGCAACTGGCTGTTC
CATACCGCTCCCTGAAGTTTCTCGGCGAACATCTGAATCTACCACAGCTT
CTGCGTCTCCACCTGCCCGAGGATTACGATGAGTGGTCTGCGGTGGCCAT
CTCCGATGCTTGGGCATATAAGAGGGGATTCCTCACCGCCAAGGCAGCCA
GGCCGGATCGCTACCGGGCCGCGAATCATATCCTTCGCATGTGCCTGGCC
GGCCAACAGATGTTGGTATTGCAGTTTTATCCGCCCGGATTTGAGGAGCG
ACGTGAGCACTGGCTCCAACATCCCGATGTGGGGGAGGTCAAGAAGTACC
AGCAAGTCGAATTAGATGAGCCGGAGAGCGAGACCAACGGCGACACATCA
TCCGTCTGCTCGGATACTGCCGACAGCGAGGATGAAGACGAGGACAGCTC
CAATGACGAGACCAATGCTGATGAGGAGGAATGTGGCATCAGGGAAGACG
CACCCAGGTCTCGGAACGTGTTTGCTCTGCTGGAGGACGATGCAAGCTTT
CTAGACCAT
BO05437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-RA | 1728 | CG9320-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-RA | 1961 | CG9320-RA | 137..1861 | 17..1741 | 8625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20753172..20754365 | 423..1616 | 5970 | 100 | Plus |
2L | 23513712 | 2L | 20752779..20753110 | 94..425 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 20754431..20754555 | 1617..1741 | 625 | 100 | Plus |
2L | 23513712 | 2L | 20752612..20752692 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:34 has no hits.
BO05437.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:50 Download gff for
BO05437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-RA | 1..1728 | 17..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:54 Download gff for
BO05437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-RA | 213..1945 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:00 Download gff for
BO05437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 137..1861 | 17..1743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:50 Download gff for
BO05437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-RA | 213..1945 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:09 Download gff for
BO05437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 137..1861 | 17..1743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:09 Download gff for
BO05437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20752612..20752690 | 17..95 | 100 | -> | Plus |
2L | 20752781..20753109 | 96..424 | 100 | -> | Plus |
2L | 20753174..20754365 | 425..1616 | 100 | -> | Plus |
2L | 20754431..20754555 | 1617..1743 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:00 Download gff for
BO05437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20752612..20752690 | 17..95 | 100 | -> | Plus |
arm_2L | 20754431..20754555 | 1617..1743 | 98 | | Plus |
arm_2L | 20752781..20753109 | 96..424 | 100 | -> | Plus |
arm_2L | 20753174..20754365 | 425..1616 | 100 | -> | Plus |
BO05437.pep Sequence
Translation from 16 to 1759
> BO05437.pep
MPQQRRKVAFSGKKKKDQMLQKRNTKGPPKYLRSTQESYEDSDVPETTRK
LMEQPFARGGNRNKNVNRYNLQFYQEGKKELEQMKQEGFKPFEKLSPAQR
EVDDRYFAGCDFPVRPPWTLTESKEELDRTENRYFKEYVDELQKKQRAGD
SKELSLFELNLETWRQLWRVLEFSDILLIIVDVRYATLMFPPSLYDYIIN
TLKKHAIVVFNKVDLVEPHAVVAWRQYFRDRYPQLPVVLFASFLPRSRKG
SQRGPQAHRRSMEGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDI
LDEISTAVEGELKISSSIDTTPHEHVKYHSGVLTIGCIGFPNVGKSSLIN
ALKGRKVVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPSSTPKSLQVL
LGSFPISQLAVPYRSLKFLGEHLNLPQLLRLHLPEDYDEWSAVAISDAWA
YKRGFLTAKAARPDRYRAANHILRMCLAGQQMLVLQFYPPGFEERREHWL
QHPDVGEVKKYQQVELDEPESETNGDTSSVCSDTADSEDEDEDSSNDETN
ADEEECGIREDAPRSRNVFALLEDDASFLDH
BO05437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-PA | 575 | CG9320-PA | 1..575 | 1..575 | 3034 | 100 | Plus |
Ns3-PB | 606 | CG14788-PB | 115..510 | 113..498 | 392 | 32.4 | Plus |
Ns3-PA | 606 | CG14788-PA | 115..510 | 113..498 | 392 | 32.4 | Plus |
Ns1-PA | 581 | CG3983-PA | 121..424 | 140..494 | 177 | 24.2 | Plus |
Ns2-PA | 674 | CG6501-PA | 316..509 | 333..540 | 174 | 28.1 | Plus |