Clone BO05438 Report

Search the DGRC for BO05438

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptGABPI-RA
Protein status:BO05438.pep: full length peptide match
Sequenced Size:1294

Clone Sequence Records

BO05438.3prime Sequence

927 bp (765 high quality bases) assembled on 2005-12-02

> BO05438.3prime
ATGGTCTAGAAAGCTTGCCTTTAAGATGGCTCGCCAGTTGCTCCAGATTC
TGTTGCGTCCTGCGGCGTTGGAGGTGCGCTTGTATTCGTGCAAGGTGGAT
CCCTTCCACCACAAGTAAGCCTGTCTAGCGAGTATAAAGGCTATGTAGGA
AGAAATGAGCAGAGCGTAGCAAGCCACCACAAAGGAGATTCCGAGGTCGA
AGCCTTCGAACACCTCACTGCAGTCGTCGGGCAAAAGAACTGGATAACCA
AGCGGTCGCACCACCATAAACGGATGGCAAATGGAAGTGAGGGTCAAGTT
TGCGCCGAGCAGCAGAGCGATCTCCGACAGGGCCAGTCCAACAATGTACC
ACACGTAGTTCCGCTCGCCAATGCAGCAGTTTAGCCAGTAGCTGTGATGA
TCGCGCCTCTTCACGCAGGTTCCGCAGACGGGACAGTGGTATGCCCGCCT
TGGAGTAACCTTCCGGCAGATCTCGCAGATATTGGGCTGACCGTGCATCA
AGCCAGATCGCTCAGCAGTGTCCATATCCCCCACCTCGTCATCATCCAAA
CTCAGCACACTCTCCATCTGGAGTGTGGTCTGGGCCTCTGCCTGCTCCTC
GCCACTCGAAGCCTCGGCGATCCCAGGCAGCTCATCCTTGGGCGTGGTTC
CGTATTGAGCAGAAACAAGATTCAAGGGCGACAGTGCCTTGGCGGAATAG
AGGCAGTACAAAGCGGCACAGGAGAAGAACATTAACGCGTAGTTCTCCTC
CGGAGCCAGCTCCAGCAGAGGAACCTGAAACTCAAATATGATGATCATGT
AGAACACCGAGAAGACCAGCCAGCTCAAAAAGAAGTTTGTCCGCGTGGCG
GTCCGCTTAGCCAGCTCCATGCCCCAGATGGTGAAGCCCACCAGCGTGAG
CATCAGCACTATGGCGGGCTTTGAGTT

BO05438.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17257-PB 1263 CG17257-RB 352..1260 927..19 4520 99.8 Minus
CG17257-PA 1263 CG17257-RA 352..1260 927..19 4520 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RD 1450 CG17257-RD 373..1281 927..19 4530 99.9 Minus
GABPI-RC 1702 CG17257-RC 625..1533 927..19 4530 99.9 Minus
GABPI-RA 1650 CG17257-RA 573..1481 927..19 4530 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3031163..3031893 927..197 3640 99.9 Minus
2L 23513712 2L 3031954..3032131 196..19 890 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:34:02 has no hits.

BO05438.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:03 Download gff for BO05438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17257-PB 352..1263 16..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:47 Download gff for BO05438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17257-PA 352..1263 16..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:10 Download gff for BO05438.3prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 482..1395 12..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:01:52 Download gff for BO05438.3prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RA 573..1486 12..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:01:52 Download gff for BO05438.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3031954..3032136 12..196 97   Minus
2L 3031163..3031893 197..927 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:10 Download gff for BO05438.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3031163..3031893 197..927 99 -> Minus
arm_2L 3031954..3032136 12..196 97   Minus

BO05438.5prime Sequence

847 bp (830 high quality bases) assembled on 2005-11-29

> BO05438.5prime
GAAGTTATCAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTC
TTTCTGCAGCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAAC
GGGAGTCTCTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATC
CCACATCCTAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCA
CAAGACTTGTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATG
CTCATCGCCTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAA
GCGAATCTCGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGC
TGGGATTGGCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACG
CTGGTGGGCTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCAC
GCGGACAAACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGA
TCATCATATTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAG
AACTACGCGTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTC
CGCCAAGGCACTGTCGCCCTTGAATCTTGTTTCTGCTCAATACGGAACCA
CGCCCAAGGATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAG
CAGGCAGAGGCCCAGACCACACTCCAGATGGAGAGTGTGCTGAGTTTGGA
TGATGACGAGGTGGGGGATATGGACACTGCTGAGCGATCTGGCTTGATGC
ACGGTCAGCCCAATATCTGCGAGATCTGCCGGAAGGTTACTCAAAGG

BO05438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17257-PB 1263 CG17257-RB 1..826 17..842 4130 100 Plus
CG17257-PA 1263 CG17257-RA 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RA 1650 CG17257-RA 222..1052 17..847 4140 99.9 Plus
GABPI-RB 1556 CG17257-RB 128..958 17..847 4140 99.9 Plus
GABPI-RD 1450 CG17257-RD 38..852 33..847 4060 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3030998..3031642 203..847 3210 99.8 Plus
2L 23513712 2L 3030760..3030947 17..204 940 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:39:28 has no hits.

BO05438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:04 Download gff for BO05438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17257-PB 1..831 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:48 Download gff for BO05438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17257-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:45 Download gff for BO05438.5prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 128..961 12..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:59 Download gff for BO05438.5prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 125..958 12..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:59 Download gff for BO05438.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3030757..3030947 12..204 98 -> Plus
2L 3031000..3031642 205..847 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:45 Download gff for BO05438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3030757..3030947 12..204 98 -> Plus
arm_2L 3031000..3031642 205..847 99   Plus

BO05438.complete Sequence

1294 bp (1294 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630035

> BO05438.complete
GAAGTTATCAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTC
TTTCTGCAGCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAAC
GGGAGTCTCTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATC
CCACATCCTAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCA
CAAGACTTGTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATG
CTCATCGCCTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAA
GCGAATCTCGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGC
TGGGATTGGCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACG
CTGGTGGGCTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCAC
GCGGACAAACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGA
TCATCATATTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAG
AACTACGCGTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTC
CGCCAAGGCACTGTCGCCCTTGAATCTTGTTTCTGCTCAATACGGAACCA
CGCCCAAGGATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAG
CAGGCAGAGGCCCAGACCACACTCCAGATGGAGAGTGTGCTGAGTTTGGA
TGATGACGAGGTGGGGGATATGGACACTGCTGAGCGATCTGGCTTGATGC
ACGGTCAGCCCAATATCTGCGAGATCTGCCGGAAGGTTACTCCAAGGCGG
GCATACCACTGTCCCGTCTGCGGAACCTGCGTGAAGAGGCGCGATCATCA
CAGCTACTGGCTAAACTGCTGCATTGGCGAGCGGAACTACGTGTGGTACA
TTGTTGGACTGGCCCTGTCGGAGATCGCTCTGCTGCTCGGCGCAAACTTG
ACCCTCACTTCCATTTGCCATCCGTTTATGGTGGTGCGACCGCTTGGTTA
TCCAGTTCTTTTGCCCGACGACTGCAGTGAGGTGTTCGAAGGCTTCGACC
TCGGAATCTCCTTTGTGGTGGCTTGCTACGCTCTGCTCATTTCTTCCTAC
ATAGCCTTTATACTCGCTAGACAGGCTTACTTGTGGTGGAAGGGATCCAC
CTTGCACGAATACAAGCGCACCTCCAACGCCGCAGGACGCAACAGAATCT
GGAGCAACTGGCGAGCCATCTTAAAGGCAAGCTTTCTAGACCAT

BO05438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RA 1263 CG17257-PA 1..1260 17..1276 6300 100 Plus
GABPI-RB 1263 CG17257-PB 1..1260 17..1276 6300 100 Plus
GABPI-RD 1032 CG17257-PD 1..1029 248..1276 5145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RA 1650 CG17257-RA 222..1481 17..1276 6300 100 Plus
GABPI-RB 1556 CG17257-RB 128..1387 17..1276 6300 100 Plus
GABPI-RD 1450 CG17257-RD 38..1281 33..1276 6220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3030998..3031893 203..1098 4480 100 Plus
2L 23513712 2L 3030760..3030947 17..204 940 100 Plus
2L 23513712 2L 3031954..3032131 1099..1276 890 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:57:20 has no hits.

BO05438.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:48 Download gff for BO05438.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RA 1..1263 17..1279 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:07 Download gff for BO05438.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RA 196..1463 12..1283 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:33 Download gff for BO05438.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 136..1390 22..1278 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:48 Download gff for BO05438.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RA 196..1463 12..1283 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:46 Download gff for BO05438.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 133..1387 22..1278 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:46 Download gff for BO05438.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3030765..3030947 22..204 100 -> Plus
2L 3031000..3031893 205..1098 100 -> Plus
2L 3031954..3032131 1099..1278 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:33 Download gff for BO05438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3030765..3030947 22..204 100 -> Plus
arm_2L 3031000..3031893 205..1098 100 -> Plus
arm_2L 3031954..3032131 1099..1278 98   Plus

BO05438.pep Sequence

Translation from 16 to 1294

> BO05438.pep
MFLMTAGTSNFLSAAWRSEAEESKSKENGSLCCCEYVAEDSRERSHILGC
CCNCVDFDLVCTRLVTCRAIDRRNIDGMLIAFQDRLRLPWRGGAKRISPA
AVAPAFIVPLMLGLATLNSKTAIVLMLTLVGFTIWGMELAKRTATRTNFF
LSWLVFSVFYMIIIFEFQVPLLELAPEENYALMFFSCAALYCLYSAKALS
PLNLVSAQYGTTPKDELPGIAEASSGEEQAEAQTTLQMESVLSLDDDEVG
DMDTAERSGLMHGQPNICEICRKVTPRRAYHCPVCGTCVKRRDHHSYWLN
CCIGERNYVWYIVGLALSEIALLLGANLTLTSICHPFMVVRPLGYPVLLP
DDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAYLWWKGSTLHEYK
RTSNAAGRNRIWSNWRAILKASFLDH

BO05438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-PA 420 CG17257-PA 1..420 1..420 2230 100 Plus
GABPI-PB 420 CG17257-PB 1..420 1..420 2230 100 Plus
GABPI-PD 343 CG17257-PD 1..343 78..420 1809 100 Plus
GABPI-PC 343 CG17257-PC 1..343 78..420 1809 100 Plus
Dnz1-PA 276 CG6627-PA 103..168 267..326 159 40.9 Plus