Clone Sequence Records
BO05438.3prime Sequence
927 bp (765 high quality bases) assembled on 2005-12-02
> BO05438.3prime
ATGGTCTAGAAAGCTTGCCTTTAAGATGGCTCGCCAGTTGCTCCAGATTC
TGTTGCGTCCTGCGGCGTTGGAGGTGCGCTTGTATTCGTGCAAGGTGGAT
CCCTTCCACCACAAGTAAGCCTGTCTAGCGAGTATAAAGGCTATGTAGGA
AGAAATGAGCAGAGCGTAGCAAGCCACCACAAAGGAGATTCCGAGGTCGA
AGCCTTCGAACACCTCACTGCAGTCGTCGGGCAAAAGAACTGGATAACCA
AGCGGTCGCACCACCATAAACGGATGGCAAATGGAAGTGAGGGTCAAGTT
TGCGCCGAGCAGCAGAGCGATCTCCGACAGGGCCAGTCCAACAATGTACC
ACACGTAGTTCCGCTCGCCAATGCAGCAGTTTAGCCAGTAGCTGTGATGA
TCGCGCCTCTTCACGCAGGTTCCGCAGACGGGACAGTGGTATGCCCGCCT
TGGAGTAACCTTCCGGCAGATCTCGCAGATATTGGGCTGACCGTGCATCA
AGCCAGATCGCTCAGCAGTGTCCATATCCCCCACCTCGTCATCATCCAAA
CTCAGCACACTCTCCATCTGGAGTGTGGTCTGGGCCTCTGCCTGCTCCTC
GCCACTCGAAGCCTCGGCGATCCCAGGCAGCTCATCCTTGGGCGTGGTTC
CGTATTGAGCAGAAACAAGATTCAAGGGCGACAGTGCCTTGGCGGAATAG
AGGCAGTACAAAGCGGCACAGGAGAAGAACATTAACGCGTAGTTCTCCTC
CGGAGCCAGCTCCAGCAGAGGAACCTGAAACTCAAATATGATGATCATGT
AGAACACCGAGAAGACCAGCCAGCTCAAAAAGAAGTTTGTCCGCGTGGCG
GTCCGCTTAGCCAGCTCCATGCCCCAGATGGTGAAGCCCACCAGCGTGAG
CATCAGCACTATGGCGGGCTTTGAGTT
BO05438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17257-PB | 1263 | CG17257-RB | 352..1260 | 927..19 | 4520 | 99.8 | Minus |
CG17257-PA | 1263 | CG17257-RA | 352..1260 | 927..19 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABPI-RD | 1450 | CG17257-RD | 373..1281 | 927..19 | 4530 | 99.9 | Minus |
GABPI-RC | 1702 | CG17257-RC | 625..1533 | 927..19 | 4530 | 99.9 | Minus |
GABPI-RA | 1650 | CG17257-RA | 573..1481 | 927..19 | 4530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3031163..3031893 | 927..197 | 3640 | 99.9 | Minus |
2L | 23513712 | 2L | 3031954..3032131 | 196..19 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:34:02 has no hits.
BO05438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:03 Download gff for
BO05438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-PB | 352..1263 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:47 Download gff for
BO05438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-PA | 352..1263 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:10 Download gff for
BO05438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RB | 482..1395 | 12..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:01:52 Download gff for
BO05438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RA | 573..1486 | 12..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:01:52 Download gff for
BO05438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3031954..3032136 | 12..196 | 97 | | Minus |
2L | 3031163..3031893 | 197..927 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:10 Download gff for
BO05438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3031163..3031893 | 197..927 | 99 | -> | Minus |
arm_2L | 3031954..3032136 | 12..196 | 97 | | Minus |
BO05438.5prime Sequence
847 bp (830 high quality bases) assembled on 2005-11-29
> BO05438.5prime
GAAGTTATCAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTC
TTTCTGCAGCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAAC
GGGAGTCTCTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATC
CCACATCCTAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCA
CAAGACTTGTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATG
CTCATCGCCTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAA
GCGAATCTCGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGC
TGGGATTGGCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACG
CTGGTGGGCTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCAC
GCGGACAAACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGA
TCATCATATTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAG
AACTACGCGTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTC
CGCCAAGGCACTGTCGCCCTTGAATCTTGTTTCTGCTCAATACGGAACCA
CGCCCAAGGATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAG
CAGGCAGAGGCCCAGACCACACTCCAGATGGAGAGTGTGCTGAGTTTGGA
TGATGACGAGGTGGGGGATATGGACACTGCTGAGCGATCTGGCTTGATGC
ACGGTCAGCCCAATATCTGCGAGATCTGCCGGAAGGTTACTCAAAGG
BO05438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17257-PB | 1263 | CG17257-RB | 1..826 | 17..842 | 4130 | 100 | Plus |
CG17257-PA | 1263 | CG17257-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABPI-RA | 1650 | CG17257-RA | 222..1052 | 17..847 | 4140 | 99.9 | Plus |
GABPI-RB | 1556 | CG17257-RB | 128..958 | 17..847 | 4140 | 99.9 | Plus |
GABPI-RD | 1450 | CG17257-RD | 38..852 | 33..847 | 4060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3030998..3031642 | 203..847 | 3210 | 99.8 | Plus |
2L | 23513712 | 2L | 3030760..3030947 | 17..204 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:39:28 has no hits.
BO05438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:04 Download gff for
BO05438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-PB | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:48 Download gff for
BO05438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:45 Download gff for
BO05438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RB | 128..961 | 12..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:59 Download gff for
BO05438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RB | 125..958 | 12..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:59 Download gff for
BO05438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3030757..3030947 | 12..204 | 98 | -> | Plus |
2L | 3031000..3031642 | 205..847 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:45 Download gff for
BO05438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3030757..3030947 | 12..204 | 98 | -> | Plus |
arm_2L | 3031000..3031642 | 205..847 | 99 | | Plus |
BO05438.complete Sequence
1294 bp (1294 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630035
> BO05438.complete
GAAGTTATCAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTC
TTTCTGCAGCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAAC
GGGAGTCTCTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATC
CCACATCCTAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCA
CAAGACTTGTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATG
CTCATCGCCTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAA
GCGAATCTCGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGC
TGGGATTGGCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACG
CTGGTGGGCTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCAC
GCGGACAAACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGA
TCATCATATTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAG
AACTACGCGTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTC
CGCCAAGGCACTGTCGCCCTTGAATCTTGTTTCTGCTCAATACGGAACCA
CGCCCAAGGATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAG
CAGGCAGAGGCCCAGACCACACTCCAGATGGAGAGTGTGCTGAGTTTGGA
TGATGACGAGGTGGGGGATATGGACACTGCTGAGCGATCTGGCTTGATGC
ACGGTCAGCCCAATATCTGCGAGATCTGCCGGAAGGTTACTCCAAGGCGG
GCATACCACTGTCCCGTCTGCGGAACCTGCGTGAAGAGGCGCGATCATCA
CAGCTACTGGCTAAACTGCTGCATTGGCGAGCGGAACTACGTGTGGTACA
TTGTTGGACTGGCCCTGTCGGAGATCGCTCTGCTGCTCGGCGCAAACTTG
ACCCTCACTTCCATTTGCCATCCGTTTATGGTGGTGCGACCGCTTGGTTA
TCCAGTTCTTTTGCCCGACGACTGCAGTGAGGTGTTCGAAGGCTTCGACC
TCGGAATCTCCTTTGTGGTGGCTTGCTACGCTCTGCTCATTTCTTCCTAC
ATAGCCTTTATACTCGCTAGACAGGCTTACTTGTGGTGGAAGGGATCCAC
CTTGCACGAATACAAGCGCACCTCCAACGCCGCAGGACGCAACAGAATCT
GGAGCAACTGGCGAGCCATCTTAAAGGCAAGCTTTCTAGACCAT
BO05438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABPI-RA | 1263 | CG17257-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
GABPI-RB | 1263 | CG17257-PB | 1..1260 | 17..1276 | 6300 | 100 | Plus |
GABPI-RD | 1032 | CG17257-PD | 1..1029 | 248..1276 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABPI-RA | 1650 | CG17257-RA | 222..1481 | 17..1276 | 6300 | 100 | Plus |
GABPI-RB | 1556 | CG17257-RB | 128..1387 | 17..1276 | 6300 | 100 | Plus |
GABPI-RD | 1450 | CG17257-RD | 38..1281 | 33..1276 | 6220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3030998..3031893 | 203..1098 | 4480 | 100 | Plus |
2L | 23513712 | 2L | 3030760..3030947 | 17..204 | 940 | 100 | Plus |
2L | 23513712 | 2L | 3031954..3032131 | 1099..1276 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:57:20 has no hits.
BO05438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:48 Download gff for
BO05438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-RA | 1..1263 | 17..1279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:07 Download gff for
BO05438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-RA | 196..1463 | 12..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:33 Download gff for
BO05438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RB | 136..1390 | 22..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:48 Download gff for
BO05438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-RA | 196..1463 | 12..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:46 Download gff for
BO05438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RB | 133..1387 | 22..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:46 Download gff for
BO05438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3030765..3030947 | 22..204 | 100 | -> | Plus |
2L | 3031000..3031893 | 205..1098 | 100 | -> | Plus |
2L | 3031954..3032131 | 1099..1278 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:33 Download gff for
BO05438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3030765..3030947 | 22..204 | 100 | -> | Plus |
arm_2L | 3031000..3031893 | 205..1098 | 100 | -> | Plus |
arm_2L | 3031954..3032131 | 1099..1278 | 98 | | Plus |
BO05438.pep Sequence
Translation from 16 to 1294
> BO05438.pep
MFLMTAGTSNFLSAAWRSEAEESKSKENGSLCCCEYVAEDSRERSHILGC
CCNCVDFDLVCTRLVTCRAIDRRNIDGMLIAFQDRLRLPWRGGAKRISPA
AVAPAFIVPLMLGLATLNSKTAIVLMLTLVGFTIWGMELAKRTATRTNFF
LSWLVFSVFYMIIIFEFQVPLLELAPEENYALMFFSCAALYCLYSAKALS
PLNLVSAQYGTTPKDELPGIAEASSGEEQAEAQTTLQMESVLSLDDDEVG
DMDTAERSGLMHGQPNICEICRKVTPRRAYHCPVCGTCVKRRDHHSYWLN
CCIGERNYVWYIVGLALSEIALLLGANLTLTSICHPFMVVRPLGYPVLLP
DDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAYLWWKGSTLHEYK
RTSNAAGRNRIWSNWRAILKASFLDH
BO05438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABPI-PA | 420 | CG17257-PA | 1..420 | 1..420 | 2230 | 100 | Plus |
GABPI-PB | 420 | CG17257-PB | 1..420 | 1..420 | 2230 | 100 | Plus |
GABPI-PD | 343 | CG17257-PD | 1..343 | 78..420 | 1809 | 100 | Plus |
GABPI-PC | 343 | CG17257-PC | 1..343 | 78..420 | 1809 | 100 | Plus |
Dnz1-PA | 276 | CG6627-PA | 103..168 | 267..326 | 159 | 40.9 | Plus |