Clone Sequence Records
BO05439.3prime Sequence
778 bp (739 high quality bases) assembled on 2005-12-02
> BO05439.3prime
ATGGTCTAGAAAGCTTGCGTCCTTGAACTTCTGGCGAACACATCTAGGCA
TTGGGAATAGGTAAACCAGCATGTTAAAGGCGGCCAAGCCCACAGCAAAA
GCGCAGGAAGCGGCCACATCGATGGTTTCATCGGGATCCGGCAATCCCAG
TCGCTCGTGCATGAAATCCGCGGGTTTGGGACAGATCACGGAGGCGGTGG
GAGTACAGTTGAGTTTCCTCGACTGGAAGGCGATGCTGTGCAGCAATGAG
GATGCGTAGCGTGTGTGAGTGCCCTTCGTGTTGTCCTGCAGCCAAGGTTG
AAGTCCCTTGAAGGAGCGCACAGTTCCACTAGCCAGTGCAATACTTATGA
CAAGGACATAGGTCACTGCAATGGCTGCGTTGAAGGGAACCTTGACCACC
AAAAGGAACGCGATCGTGAGCTGTTCCGCCAGCACAAAACTGGACCACAG
GGCCACTAGCAAGTAGGCGAAGACAGTACCATTGTTGTACTTCACATCCA
ATAGCAGAGGATATACAACACAACTGGCTATGACGGCAGATACGGCGGAA
AATGGTATAGACACGGAGTTGTAGGCAATCAGTAGAGTTGTGCCCGAATA
GAGACCCTCTGGAGTATCCTGCGAGAACTTCTTGCGCCAAATCGGAAATA
AAGATATGGTAGTCAAAATTCCACAACCGTACGACAGCCCCAAAATATTA
AGGATCATGCCGTTTTTTGTAAAGAATCCATGTGAATCGTCCCCGACATC
TGTGTAAAATGCCCATAGGATGCTTAAA
BO05439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11069-PA | 1815 | CG11069-RA | 1053..1812 | 778..19 | 3800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11069-RA | 2038 | CG11069-RA | 1195..1954 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24896926..24897117 | 508..317 | 960 | 100 | Minus |
3R | 32079331 | 3R | 24897175..24897363 | 317..129 | 945 | 100 | Minus |
3R | 32079331 | 3R | 24896731..24896869 | 647..509 | 695 | 100 | Minus |
3R | 32079331 | 3R | 24897419..24897529 | 129..19 | 555 | 100 | Minus |
3R | 32079331 | 3R | 24896582..24896676 | 742..648 | 475 | 100 | Minus |
3R | 32079331 | 3R | 24896492..24896529 | 778..741 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:25:45 has no hits.
BO05439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:05 Download gff for
BO05439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-PA | 1056..1815 | 15..775 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:50 Download gff for
BO05439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-PA | 1056..1815 | 15..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:10 Download gff for
BO05439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-RA | 1198..1963 | 9..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:07 Download gff for
BO05439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-RA | 1198..1963 | 9..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:07 Download gff for
BO05439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24897419..24897538 | 9..129 | 96 | | Minus |
3R | 24896583..24896676 | 648..741 | 100 | -> | Minus |
3R | 24896495..24896528 | 742..775 | 100 | -> | Minus |
3R | 24896731..24896869 | 509..647 | 100 | -> | Minus |
3R | 24896926..24897117 | 317..508 | 100 | -> | Minus |
3R | 24897176..24897362 | 130..316 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:10 Download gff for
BO05439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20722217..20722250 | 742..775 | 100 | -> | Minus |
arm_3R | 20722305..20722398 | 648..741 | 100 | -> | Minus |
arm_3R | 20722453..20722591 | 509..647 | 100 | -> | Minus |
arm_3R | 20722648..20722839 | 317..508 | 100 | -> | Minus |
arm_3R | 20722898..20723084 | 130..316 | 100 | -> | Minus |
arm_3R | 20723141..20723260 | 9..129 | 96 | | Minus |
BO05439.5prime Sequence
808 bp (749 high quality bases) assembled on 2005-12-02
> BO05439.5prime
GAAGTTATCAGTCGACATGAAAATGATCGGCAGCGACTACGTACTGGAAG
CCCACAACATTTTCCACACCACCGAGGTGGATGGTGGTGGCTGTTTCAAT
GGAGCCGGCAATTCGGCCCTGGTGCTCAAAGGCGTCAATCTAACCGTGCA
CAGCGGCGAGGTTATGGCCATTCTGGGCTCGAAGGGTAGCGGCAAGAGAG
CTCTTTTAGATGTTATTTCTAGACGTGCCGATGGAGCAACTCGTGGTCAG
GTGCTACTCAATGGATCTCCGCTCTCCAAGGCATTGTTCCAACAGAGATG
TGGCTATGTCACCCAATCCTGCACCTTTGTTCCTGGTCTAACGGTGGCCC
AAACACTACACTATACCCCCACTATATTGAGTGGCTATCTGAAGAGTTCC
AAAGTGCGCCAAGTGCTGGCGGATTTGGCCCTTTCCCAAGTGGCGCATAA
GAGAGTGGAGTATCTTAATATCAGTGAGGCACGGCGTCTGGCTATTGGAA
TACAGTTGGTCAGAGATCCTGTCATGCTATTGCTGGATGAGCCGACCCAT
GGCCTCGATCCCTTGAGTGCCTATCTGCTGATATCCATTTTGTCCAACAC
GGCCAAGAAGACGGGCTGTGGAATTCTTCTGTCGCTGGAGAAACCTCGCT
CCGATGTGTTCCCATTCCTGGATAGAGCCCTATTCCTCTGCCTGGGCGGA
GTGGTCTATTCAGGAGGCACTCGTGCCATGCTGGAGTACTTTCATGGCAT
CGGATTCCCTTGTCCACAGCTCGAGAATCCCTTGATGTACTATCTCTGCC
TGTCCACT
BO05439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11069-PA | 1815 | CG11069-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11069-RA | 2038 | CG11069-RA | 143..934 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24895885..24896172 | 521..808 | 1440 | 100 | Plus |
3R | 32079331 | 3R | 24895415..24895612 | 185..382 | 975 | 99.5 | Plus |
3R | 32079331 | 3R | 24895686..24895830 | 377..521 | 725 | 100 | Plus |
3R | 32079331 | 3R | 24895244..24895357 | 75..188 | 570 | 100 | Plus |
3R | 32079331 | 3R | 24895112..24895173 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:39:46 has no hits.
BO05439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:06 Download gff for
BO05439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:52 Download gff for
BO05439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:46 Download gff for
BO05439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-RA | 137..934 | 11..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:45:56 Download gff for
BO05439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-RA | 137..934 | 11..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:45:56 Download gff for
BO05439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24895246..24895354 | 77..185 | 100 | -> | Plus |
3R | 24895416..24895606 | 186..376 | 100 | -> | Plus |
3R | 24895686..24895830 | 377..521 | 100 | -> | Plus |
3R | 24895886..24896172 | 522..808 | 100 | | Plus |
3R | 24895106..24895171 | 11..76 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:46 Download gff for
BO05439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20720828..20720893 | 11..76 | 95 | -> | Plus |
arm_3R | 20720968..20721076 | 77..185 | 100 | -> | Plus |
arm_3R | 20721138..20721328 | 186..376 | 100 | -> | Plus |
arm_3R | 20721408..20721552 | 377..521 | 100 | -> | Plus |
arm_3R | 20721608..20721894 | 522..808 | 100 | | Plus |
BO05439.complete Sequence
1846 bp assembled on 2008-08-14
GenBank Submission: FJ630036
> BO05439.complete
GAAGTTATCAGTCGACATGAAAATGATCGGCAGCGACTACGTACTGGAAG
CCCACAACATTTTCCACACCACCGAGGTGGATGGTGGTGGCTGTTTCAAT
GGAGCCGGCAATTCGGCCCTGGTGCTCAAAGGCGTCAATCTAACCGTGCA
CAGCGGCGAGGTTATGGCCATTCTGGGCTCGAAGGGTAGCGGCAAGAGAG
CTCTTTTAGATGTTATTTCTAGACGTGCCGATGGAGCAACTCGTGGTCAG
GTGCTACTCAATGGATCTCCGCTCTCCAAGGCATTGTTCCAACAGAGATG
TGGCTATGTCACCCAATCCTGCACCTTTGTTCCTGGTCTAACGGTGGCCC
AAACACTACACTATACCCCCACTATATTGAGTGGCTATCTGAAGAGTTCC
AAAGTGCGCCAAGTGCTGGCGGATTTGGCCCTTTCCCAAGTGGCGCATAA
GAGAGTGGAGTATCTTAATATCAGTGAGGCACGGCGTCTGGCTATTGGAA
TACAGTTGGTCAGAGATCCTGTCATGCTATTGCTGGATGAGCCGACCCAT
GGCCTCGATCCCTTGAGTGCCTATCTGCTGATATCCATTTTGTCCAACAC
GGCCAAGAAGACGGGCTGTGGAATTCTTCTGTCGCTGGAGAAACCTCGCT
CCGATGTGTTCCCATTCCTGGATAGAGCCCTATTCCTCTGCCTGGGCGGA
GTGGTCTATTCAGGAGGCACTCGTGCCATGCTGGAGTACTTTCATGGCAT
CGGATTCCCTTGTCCACAGCTCGAGAATCCCTTGATGTACTATCTCTGCC
TGTCCACTGTGGATCGTCGCAGTCGGGATCGATTCCTGGAGTCTAGCCAG
CAGATCGAGGCGCTGGTGGAACGTTTCTCTCGGGAAACACCGATCTCGGA
TGCCCCTCTAAACAACATGGGTTCTGGGAAAGTGCCTCTGGCCTATGGAA
AGCCTGGAGAGCTCAAAGTTTGGGTTATGCTGTATCTGAAACTATTAGCA
TCAACCTTCTCCTGTGGACTCGTTGGTATGAAGACACTATTTCTGCGCCT
TTTGCTTCTTCCATTGGCTTTAAGCATCCTATGGGCATTTTACACAGATG
TCGGGGACGATTCACATGGATTCTTTACAAAAAACGGCATGATCCTTAAT
ATTTTGGGGCTGTCGTACGGTTGTGGAATTTTGACTACCATATCTTTATT
TCCGATTTGGCGCAAGAAGTTCTCGCAGGATACTCCAGAGGGTCTCTATT
CGGGCACAACTCTACTGATTGCCTACAACTCCGTGTCTATACCATTTTCC
GCCGTATCTGCCGTCATAGCCAGTTGTGTTGTATATCCTCTGCTATTGGA
TGTGAAGTACAACAATGGTACTGTCTTCGCCTACTTGCTAGTGGCCCTGT
GGTCCAGTTTTGTGCTGGCGGAACAGCTCACGATCGCGTTCCTTTTGGTG
GTCAAGGTTCCCTTCAACGCAGCCATTGCAGTGACCTATGTCCTTGTCAT
AAGTATTGCACTGGCTAGTGGAACTGTGCGCTCCTTCAAGGGACTTCAAC
CTTGGCTGCAGGACAACACGAAGGGCACTCACACACGCTACGCATCCTCA
TTGCTGCACAGCATCGCCTTCCAGTCGAGGAAACTCAACTGTACTCCCAC
CGCCTCCGTGATCTGTCCCAAACCCGCGGATTTCATGCACGAGCGACTGG
GATTGCCGGATCCCGATGAAACCATCGATGTGGCCGCTTCCTGCGCTTTT
GCTGTGGGCTTGGCCGCCTTTAACATGCTGGTTTACCTATTCCCAATGCC
TAGATGTGTTCGCCAGAAGTTCAAGGACGCAAGCTTTCTAGACCAT
BO05439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11069-RA | 1815 | CG11069-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11069-RA | 2038 | CG11069-RA | 143..1954 | 17..1828 | 9060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24895885..24896352 | 521..988 | 2340 | 100 | Plus |
3R | 32079331 | 3R | 24895415..24895612 | 185..382 | 975 | 99.5 | Plus |
3R | 32079331 | 3R | 24896926..24897117 | 1339..1530 | 960 | 100 | Plus |
3R | 32079331 | 3R | 24897175..24897363 | 1530..1718 | 945 | 100 | Plus |
3R | 32079331 | 3R | 24895686..24895830 | 377..521 | 725 | 100 | Plus |
3R | 32079331 | 3R | 24896731..24896869 | 1200..1338 | 695 | 100 | Plus |
3R | 32079331 | 3R | 24896411..24896529 | 988..1106 | 595 | 100 | Plus |
3R | 32079331 | 3R | 24895244..24895357 | 75..188 | 570 | 100 | Plus |
3R | 32079331 | 3R | 24897419..24897529 | 1718..1828 | 555 | 100 | Plus |
3R | 32079331 | 3R | 24896582..24896676 | 1105..1199 | 475 | 100 | Plus |
3R | 32079331 | 3R | 24895112..24895173 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:42:30 has no hits.
BO05439.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:40 Download gff for
BO05439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-RA | 135..1961 | 11..1838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:59 Download gff for
BO05439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-RA | 143..1954 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:29 Download gff for
BO05439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-RA | 141..1952 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:55 Download gff for
BO05439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11069-RA | 143..1954 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:55 Download gff for
BO05439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24896926..24897117 | 1339..1530 | 100 | -> | Plus |
3R | 24897176..24897362 | 1531..1717 | 100 | -> | Plus |
3R | 24897419..24897529 | 1718..1830 | 98 | | Plus |
3R | 24896731..24896869 | 1200..1338 | 100 | -> | Plus |
3R | 24895112..24895171 | 17..76 | 100 | -> | Plus |
3R | 24895246..24895354 | 77..185 | 100 | -> | Plus |
3R | 24895416..24895606 | 186..376 | 100 | -> | Plus |
3R | 24895686..24895830 | 377..521 | 100 | -> | Plus |
3R | 24895886..24896351 | 522..987 | 100 | -> | Plus |
3R | 24896411..24896528 | 988..1105 | 100 | -> | Plus |
3R | 24896583..24896676 | 1106..1199 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:59 Download gff for
BO05439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20720834..20720893 | 17..76 | 100 | -> | Plus |
arm_3R | 20720968..20721076 | 77..185 | 100 | -> | Plus |
arm_3R | 20721138..20721328 | 186..376 | 100 | -> | Plus |
arm_3R | 20721408..20721552 | 377..521 | 100 | -> | Plus |
arm_3R | 20721608..20722073 | 522..987 | 100 | -> | Plus |
arm_3R | 20722133..20722250 | 988..1105 | 100 | -> | Plus |
arm_3R | 20722305..20722398 | 1106..1199 | 100 | -> | Plus |
arm_3R | 20722453..20722591 | 1200..1338 | 100 | -> | Plus |
arm_3R | 20722648..20722839 | 1339..1530 | 100 | -> | Plus |
arm_3R | 20722898..20723084 | 1531..1717 | 100 | -> | Plus |
arm_3R | 20723141..20723251 | 1718..1830 | 98 | | Plus |
BO05439.pep Sequence
Translation from 16 to 1846
> BO05439.pep
MKMIGSDYVLEAHNIFHTTEVDGGGCFNGAGNSALVLKGVNLTVHSGEVM
AILGSKGSGKRALLDVISRRADGATRGQVLLNGSPLSKALFQQRCGYVTQ
SCTFVPGLTVAQTLHYTPTILSGYLKSSKVRQVLADLALSQVAHKRVEYL
NISEARRLAIGIQLVRDPVMLLLDEPTHGLDPLSAYLLISILSNTAKKTG
CGILLSLEKPRSDVFPFLDRALFLCLGGVVYSGGTRAMLEYFHGIGFPCP
QLENPLMYYLCLSTVDRRSRDRFLESSQQIEALVERFSRETPISDAPLNN
MGSGKVPLAYGKPGELKVWVMLYLKLLASTFSCGLVGMKTLFLRLLLLPL
ALSILWAFYTDVGDDSHGFFTKNGMILNILGLSYGCGILTTISLFPIWRK
KFSQDTPEGLYSGTTLLIAYNSVSIPFSAVSAVIASCVVYPLLLDVKYNN
GTVFAYLLVALWSSFVLAEQLTIAFLLVVKVPFNAAIAVTYVLVISIALA
SGTVRSFKGLQPWLQDNTKGTHTRYASSLLHSIAFQSRKLNCTPTASVIC
PKPADFMHERLGLPDPDETIDVAASCAFAVGLAAFNMLVYLFPMPRCVRQ
KFKDASFLDH
BO05439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11069-PA | 604 | CG11069-PA | 1..604 | 1..604 | 3095 | 100 | Plus |
w-PA | 687 | CG2759-PA | 112..677 | 36..591 | 366 | 24.3 | Plus |
CG3164-PD | 698 | CG3164-PD | 62..308 | 32..274 | 286 | 27.8 | Plus |
CG3164-PB | 698 | CG3164-PB | 62..308 | 32..274 | 286 | 27.8 | Plus |
CG3164-PC | 699 | CG3164-PC | 63..309 | 32..274 | 286 | 27.8 | Plus |