Clone BO05439 Report

Search the DGRC for BO05439

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG11069-RA
Protein status:BO05439.pep: Imported from assembly
Sequenced Size:1846

Clone Sequence Records

BO05439.3prime Sequence

778 bp (739 high quality bases) assembled on 2005-12-02

> BO05439.3prime
ATGGTCTAGAAAGCTTGCGTCCTTGAACTTCTGGCGAACACATCTAGGCA
TTGGGAATAGGTAAACCAGCATGTTAAAGGCGGCCAAGCCCACAGCAAAA
GCGCAGGAAGCGGCCACATCGATGGTTTCATCGGGATCCGGCAATCCCAG
TCGCTCGTGCATGAAATCCGCGGGTTTGGGACAGATCACGGAGGCGGTGG
GAGTACAGTTGAGTTTCCTCGACTGGAAGGCGATGCTGTGCAGCAATGAG
GATGCGTAGCGTGTGTGAGTGCCCTTCGTGTTGTCCTGCAGCCAAGGTTG
AAGTCCCTTGAAGGAGCGCACAGTTCCACTAGCCAGTGCAATACTTATGA
CAAGGACATAGGTCACTGCAATGGCTGCGTTGAAGGGAACCTTGACCACC
AAAAGGAACGCGATCGTGAGCTGTTCCGCCAGCACAAAACTGGACCACAG
GGCCACTAGCAAGTAGGCGAAGACAGTACCATTGTTGTACTTCACATCCA
ATAGCAGAGGATATACAACACAACTGGCTATGACGGCAGATACGGCGGAA
AATGGTATAGACACGGAGTTGTAGGCAATCAGTAGAGTTGTGCCCGAATA
GAGACCCTCTGGAGTATCCTGCGAGAACTTCTTGCGCCAAATCGGAAATA
AAGATATGGTAGTCAAAATTCCACAACCGTACGACAGCCCCAAAATATTA
AGGATCATGCCGTTTTTTGTAAAGAATCCATGTGAATCGTCCCCGACATC
TGTGTAAAATGCCCATAGGATGCTTAAA

BO05439.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11069-PA 1815 CG11069-RA 1053..1812 778..19 3800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11069-RA 2038 CG11069-RA 1195..1954 778..19 3800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24896926..24897117 508..317 960 100 Minus
3R 32079331 3R 24897175..24897363 317..129 945 100 Minus
3R 32079331 3R 24896731..24896869 647..509 695 100 Minus
3R 32079331 3R 24897419..24897529 129..19 555 100 Minus
3R 32079331 3R 24896582..24896676 742..648 475 100 Minus
3R 32079331 3R 24896492..24896529 778..741 190 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:25:45 has no hits.

BO05439.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:05 Download gff for BO05439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11069-PA 1056..1815 15..775 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:50 Download gff for BO05439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11069-PA 1056..1815 15..775 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:10 Download gff for BO05439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11069-RA 1198..1963 9..775 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:07 Download gff for BO05439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11069-RA 1198..1963 9..775 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:07 Download gff for BO05439.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24897419..24897538 9..129 96   Minus
3R 24896583..24896676 648..741 100 -> Minus
3R 24896495..24896528 742..775 100 -> Minus
3R 24896731..24896869 509..647 100 -> Minus
3R 24896926..24897117 317..508 100 -> Minus
3R 24897176..24897362 130..316 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:10 Download gff for BO05439.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20722217..20722250 742..775 100 -> Minus
arm_3R 20722305..20722398 648..741 100 -> Minus
arm_3R 20722453..20722591 509..647 100 -> Minus
arm_3R 20722648..20722839 317..508 100 -> Minus
arm_3R 20722898..20723084 130..316 100 -> Minus
arm_3R 20723141..20723260 9..129 96   Minus

BO05439.5prime Sequence

808 bp (749 high quality bases) assembled on 2005-12-02

> BO05439.5prime
GAAGTTATCAGTCGACATGAAAATGATCGGCAGCGACTACGTACTGGAAG
CCCACAACATTTTCCACACCACCGAGGTGGATGGTGGTGGCTGTTTCAAT
GGAGCCGGCAATTCGGCCCTGGTGCTCAAAGGCGTCAATCTAACCGTGCA
CAGCGGCGAGGTTATGGCCATTCTGGGCTCGAAGGGTAGCGGCAAGAGAG
CTCTTTTAGATGTTATTTCTAGACGTGCCGATGGAGCAACTCGTGGTCAG
GTGCTACTCAATGGATCTCCGCTCTCCAAGGCATTGTTCCAACAGAGATG
TGGCTATGTCACCCAATCCTGCACCTTTGTTCCTGGTCTAACGGTGGCCC
AAACACTACACTATACCCCCACTATATTGAGTGGCTATCTGAAGAGTTCC
AAAGTGCGCCAAGTGCTGGCGGATTTGGCCCTTTCCCAAGTGGCGCATAA
GAGAGTGGAGTATCTTAATATCAGTGAGGCACGGCGTCTGGCTATTGGAA
TACAGTTGGTCAGAGATCCTGTCATGCTATTGCTGGATGAGCCGACCCAT
GGCCTCGATCCCTTGAGTGCCTATCTGCTGATATCCATTTTGTCCAACAC
GGCCAAGAAGACGGGCTGTGGAATTCTTCTGTCGCTGGAGAAACCTCGCT
CCGATGTGTTCCCATTCCTGGATAGAGCCCTATTCCTCTGCCTGGGCGGA
GTGGTCTATTCAGGAGGCACTCGTGCCATGCTGGAGTACTTTCATGGCAT
CGGATTCCCTTGTCCACAGCTCGAGAATCCCTTGATGTACTATCTCTGCC
TGTCCACT

BO05439.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11069-PA 1815 CG11069-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11069-RA 2038 CG11069-RA 143..934 17..808 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24895885..24896172 521..808 1440 100 Plus
3R 32079331 3R 24895415..24895612 185..382 975 99.5 Plus
3R 32079331 3R 24895686..24895830 377..521 725 100 Plus
3R 32079331 3R 24895244..24895357 75..188 570 100 Plus
3R 32079331 3R 24895112..24895173 17..78 310 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:39:46 has no hits.

BO05439.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:06 Download gff for BO05439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11069-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:52 Download gff for BO05439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11069-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:46 Download gff for BO05439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11069-RA 137..934 11..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:45:56 Download gff for BO05439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11069-RA 137..934 11..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:45:56 Download gff for BO05439.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24895246..24895354 77..185 100 -> Plus
3R 24895416..24895606 186..376 100 -> Plus
3R 24895686..24895830 377..521 100 -> Plus
3R 24895886..24896172 522..808 100   Plus
3R 24895106..24895171 11..76 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:46 Download gff for BO05439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20720828..20720893 11..76 95 -> Plus
arm_3R 20720968..20721076 77..185 100 -> Plus
arm_3R 20721138..20721328 186..376 100 -> Plus
arm_3R 20721408..20721552 377..521 100 -> Plus
arm_3R 20721608..20721894 522..808 100   Plus

BO05439.complete Sequence

1846 bp assembled on 2008-08-14

GenBank Submission: FJ630036

> BO05439.complete
GAAGTTATCAGTCGACATGAAAATGATCGGCAGCGACTACGTACTGGAAG
CCCACAACATTTTCCACACCACCGAGGTGGATGGTGGTGGCTGTTTCAAT
GGAGCCGGCAATTCGGCCCTGGTGCTCAAAGGCGTCAATCTAACCGTGCA
CAGCGGCGAGGTTATGGCCATTCTGGGCTCGAAGGGTAGCGGCAAGAGAG
CTCTTTTAGATGTTATTTCTAGACGTGCCGATGGAGCAACTCGTGGTCAG
GTGCTACTCAATGGATCTCCGCTCTCCAAGGCATTGTTCCAACAGAGATG
TGGCTATGTCACCCAATCCTGCACCTTTGTTCCTGGTCTAACGGTGGCCC
AAACACTACACTATACCCCCACTATATTGAGTGGCTATCTGAAGAGTTCC
AAAGTGCGCCAAGTGCTGGCGGATTTGGCCCTTTCCCAAGTGGCGCATAA
GAGAGTGGAGTATCTTAATATCAGTGAGGCACGGCGTCTGGCTATTGGAA
TACAGTTGGTCAGAGATCCTGTCATGCTATTGCTGGATGAGCCGACCCAT
GGCCTCGATCCCTTGAGTGCCTATCTGCTGATATCCATTTTGTCCAACAC
GGCCAAGAAGACGGGCTGTGGAATTCTTCTGTCGCTGGAGAAACCTCGCT
CCGATGTGTTCCCATTCCTGGATAGAGCCCTATTCCTCTGCCTGGGCGGA
GTGGTCTATTCAGGAGGCACTCGTGCCATGCTGGAGTACTTTCATGGCAT
CGGATTCCCTTGTCCACAGCTCGAGAATCCCTTGATGTACTATCTCTGCC
TGTCCACTGTGGATCGTCGCAGTCGGGATCGATTCCTGGAGTCTAGCCAG
CAGATCGAGGCGCTGGTGGAACGTTTCTCTCGGGAAACACCGATCTCGGA
TGCCCCTCTAAACAACATGGGTTCTGGGAAAGTGCCTCTGGCCTATGGAA
AGCCTGGAGAGCTCAAAGTTTGGGTTATGCTGTATCTGAAACTATTAGCA
TCAACCTTCTCCTGTGGACTCGTTGGTATGAAGACACTATTTCTGCGCCT
TTTGCTTCTTCCATTGGCTTTAAGCATCCTATGGGCATTTTACACAGATG
TCGGGGACGATTCACATGGATTCTTTACAAAAAACGGCATGATCCTTAAT
ATTTTGGGGCTGTCGTACGGTTGTGGAATTTTGACTACCATATCTTTATT
TCCGATTTGGCGCAAGAAGTTCTCGCAGGATACTCCAGAGGGTCTCTATT
CGGGCACAACTCTACTGATTGCCTACAACTCCGTGTCTATACCATTTTCC
GCCGTATCTGCCGTCATAGCCAGTTGTGTTGTATATCCTCTGCTATTGGA
TGTGAAGTACAACAATGGTACTGTCTTCGCCTACTTGCTAGTGGCCCTGT
GGTCCAGTTTTGTGCTGGCGGAACAGCTCACGATCGCGTTCCTTTTGGTG
GTCAAGGTTCCCTTCAACGCAGCCATTGCAGTGACCTATGTCCTTGTCAT
AAGTATTGCACTGGCTAGTGGAACTGTGCGCTCCTTCAAGGGACTTCAAC
CTTGGCTGCAGGACAACACGAAGGGCACTCACACACGCTACGCATCCTCA
TTGCTGCACAGCATCGCCTTCCAGTCGAGGAAACTCAACTGTACTCCCAC
CGCCTCCGTGATCTGTCCCAAACCCGCGGATTTCATGCACGAGCGACTGG
GATTGCCGGATCCCGATGAAACCATCGATGTGGCCGCTTCCTGCGCTTTT
GCTGTGGGCTTGGCCGCCTTTAACATGCTGGTTTACCTATTCCCAATGCC
TAGATGTGTTCGCCAGAAGTTCAAGGACGCAAGCTTTCTAGACCAT

BO05439.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11069-RA 1815 CG11069-PA 1..1812 17..1828 9060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11069-RA 2038 CG11069-RA 143..1954 17..1828 9060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24895885..24896352 521..988 2340 100 Plus
3R 32079331 3R 24895415..24895612 185..382 975 99.5 Plus
3R 32079331 3R 24896926..24897117 1339..1530 960 100 Plus
3R 32079331 3R 24897175..24897363 1530..1718 945 100 Plus
3R 32079331 3R 24895686..24895830 377..521 725 100 Plus
3R 32079331 3R 24896731..24896869 1200..1338 695 100 Plus
3R 32079331 3R 24896411..24896529 988..1106 595 100 Plus
3R 32079331 3R 24895244..24895357 75..188 570 100 Plus
3R 32079331 3R 24897419..24897529 1718..1828 555 100 Plus
3R 32079331 3R 24896582..24896676 1105..1199 475 100 Plus
3R 32079331 3R 24895112..24895173 17..78 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:42:30 has no hits.

BO05439.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:40 Download gff for BO05439.complete
Subject Subject Range Query Range Percent Splice Strand
CG11069-RA 135..1961 11..1838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:59 Download gff for BO05439.complete
Subject Subject Range Query Range Percent Splice Strand
CG11069-RA 143..1954 17..1830 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:29 Download gff for BO05439.complete
Subject Subject Range Query Range Percent Splice Strand
CG11069-RA 141..1952 17..1830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:55 Download gff for BO05439.complete
Subject Subject Range Query Range Percent Splice Strand
CG11069-RA 143..1954 17..1830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:55 Download gff for BO05439.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24896926..24897117 1339..1530 100 -> Plus
3R 24897176..24897362 1531..1717 100 -> Plus
3R 24897419..24897529 1718..1830 98   Plus
3R 24896731..24896869 1200..1338 100 -> Plus
3R 24895112..24895171 17..76 100 -> Plus
3R 24895246..24895354 77..185 100 -> Plus
3R 24895416..24895606 186..376 100 -> Plus
3R 24895686..24895830 377..521 100 -> Plus
3R 24895886..24896351 522..987 100 -> Plus
3R 24896411..24896528 988..1105 100 -> Plus
3R 24896583..24896676 1106..1199 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:59 Download gff for BO05439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20720834..20720893 17..76 100 -> Plus
arm_3R 20720968..20721076 77..185 100 -> Plus
arm_3R 20721138..20721328 186..376 100 -> Plus
arm_3R 20721408..20721552 377..521 100 -> Plus
arm_3R 20721608..20722073 522..987 100 -> Plus
arm_3R 20722133..20722250 988..1105 100 -> Plus
arm_3R 20722305..20722398 1106..1199 100 -> Plus
arm_3R 20722453..20722591 1200..1338 100 -> Plus
arm_3R 20722648..20722839 1339..1530 100 -> Plus
arm_3R 20722898..20723084 1531..1717 100 -> Plus
arm_3R 20723141..20723251 1718..1830 98   Plus

BO05439.pep Sequence

Translation from 16 to 1846

> BO05439.pep
MKMIGSDYVLEAHNIFHTTEVDGGGCFNGAGNSALVLKGVNLTVHSGEVM
AILGSKGSGKRALLDVISRRADGATRGQVLLNGSPLSKALFQQRCGYVTQ
SCTFVPGLTVAQTLHYTPTILSGYLKSSKVRQVLADLALSQVAHKRVEYL
NISEARRLAIGIQLVRDPVMLLLDEPTHGLDPLSAYLLISILSNTAKKTG
CGILLSLEKPRSDVFPFLDRALFLCLGGVVYSGGTRAMLEYFHGIGFPCP
QLENPLMYYLCLSTVDRRSRDRFLESSQQIEALVERFSRETPISDAPLNN
MGSGKVPLAYGKPGELKVWVMLYLKLLASTFSCGLVGMKTLFLRLLLLPL
ALSILWAFYTDVGDDSHGFFTKNGMILNILGLSYGCGILTTISLFPIWRK
KFSQDTPEGLYSGTTLLIAYNSVSIPFSAVSAVIASCVVYPLLLDVKYNN
GTVFAYLLVALWSSFVLAEQLTIAFLLVVKVPFNAAIAVTYVLVISIALA
SGTVRSFKGLQPWLQDNTKGTHTRYASSLLHSIAFQSRKLNCTPTASVIC
PKPADFMHERLGLPDPDETIDVAASCAFAVGLAAFNMLVYLFPMPRCVRQ
KFKDASFLDH

BO05439.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11069-PA 604 CG11069-PA 1..604 1..604 3095 100 Plus
w-PA 687 CG2759-PA 112..677 36..591 366 24.3 Plus
CG3164-PD 698 CG3164-PD 62..308 32..274 286 27.8 Plus
CG3164-PB 698 CG3164-PB 62..308 32..274 286 27.8 Plus
CG3164-PC 699 CG3164-PC 63..309 32..274 286 27.8 Plus