Clone Sequence Records
BO05440.3prime Sequence
906 bp (859 high quality bases) assembled on 2005-12-02
> BO05440.3prime
ATGGTCTAGAAAGCTTGCTCGCTTGCGATATAAGCAAGGTTTGAGAGAGA
AAGCTTTCATCTTGGTGTTCTTGGGCACATGACGCATCTTCTTGAATTGG
AAGAAGTAGAAATAGTTAACAGCCACATCCTTCTTGTTAAGATCGAATCC
ACATGCATTGAGGCAACGCACAAACTCCCGCACATCCTGGAATCGCGACT
GAATCTCCGCGATATAGACAGTGCCGTGCAGCTTGAGCACTCGATTGGCC
TCCAGGAAGAACTCGTTCAGATCCGTGCCCATTAGTGAGAGGCAGTATAC
GGCCACGTCCAGAGTTCGAGCTTGGAGTGGAGTATCCGTGATGTTGCAGG
CAATGATGTCGCTACGAGCAGCGACCAAGTCCATGGAGTACACCTTGTTG
GGCACGGATTGTGCCAATTTGCCCTCGCCGCAACCAAAGTCGCCAATTAT
GGCTGTTTTGGGAATCTTCTTGATGGTCTTGATGATGCGATTAAGCGGAT
TGATGGGCCACTTCTCCACCTGCTGGCGGTAGCCAGCGTGATAGGCCTCG
AAGGCGGAGCTATCCTTGCGGAAAAGTGCCTCCGCCTTGCGACTGGTCGT
CGAGTAGAGCTGCTCGTTGATGTATCGGAAACGTCCGCCCAGGAGTTCCG
ATTGCAGCTTACTGGCCAACGAGTTTGCAGCCGGCGTGGTTGAGCTGGTG
GCCTCCATGGCCTCCAAAGCCGCCTGGGCCAGTTCGGGTTTCAGTTTCAG
TTCTTTTTTGCCACCTTTTGTGGCCTGCGTTGGTGGTCGCTGTTTCTCTA
TTCTTCCGGACTTCACCTTGTGCATGGCCCGGATGCCATCCTCCACATCT
TCGTAGTCATCATCCGAGGAGTCTTTGGGGCGGGGCAAGAGGTCCTCTGC
CCTGCC
BO05440.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-PA | 1077 | CG7137-RA | 218..1074 | 875..19 | 4285 | 100 | Minus |
| CG7137-PA | 1077 | CG7137-RA | 188..219 | 906..875 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-RA | 1270 | CG7137-RA | 250..1136 | 906..19 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19227593..19228479 | 906..19 | 4390 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:02:26 has no hits.
BO05440.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:07 Download gff for
BO05440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-PA | 188..1077 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:53 Download gff for
BO05440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-PA | 188..1077 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:36 Download gff for
BO05440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 250..1136 | 19..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:44 Download gff for
BO05440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 250..1136 | 19..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:44 Download gff for
BO05440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19227593..19228479 | 19..906 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:36 Download gff for
BO05440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15115098..15115984 | 19..906 | 99 | | Minus |
BO05440.5prime Sequence
899 bp (852 high quality bases) assembled on 2005-12-02
> BO05440.5prime
GAAGTTATCAGTCGACATGAAGCCTTTCGAAGTGCCGCCCTGGGAGGAAG
GAGCCGATATCATTGAGTTTGAGCCGGTAAATCCTTCAGGAAATGGAGTT
GCCGCCAAGAAGAAACCAAAGAAGAAGAAACCCAAAAAGAAGAAGGCCGC
TGTGCCAAATGAAAATCTGAATGTGAACAAGGCAGCTGAAAAATTCACTT
ACCGGCAGGGCAGAGGACCTCTTGCCCCGCCCCAAGACTCCTCGGATGAT
GACTACGAAGATGTGGAGGATGGCATCCGGGCCATGCACAAGGTGAAGTC
CGGAAGAATAGAGAAACAGCGACCACCAACGCAGGCCACAAAAGGTGGCA
AAAAAGAACTGAAACTGAAACCCGAACTGGCCCAGGCGGCTTTGGAGGCC
ATGGAGGCCACCAGCTCAACCACGCCGGCTGCAAACTCGTTGGCCAGTAA
GCTGCAATCGGAACTCCTGGGCGGACGTTTCCGATACATCAACGAGCAGC
TCTACTCGACGACCAGTCGCAAGGCGGAGGCACTTTTCCGCAAGGATAGC
TCCGCCTTCGAGGCCTATCACGCTGGCTACCGCCAGCAGGTGGAGAAGTG
GCCCATCAATCCGCTTAATCGCATCATCAAGACCATCAAGAAGATTCCCA
AAACAGCCATAATTGGCGACTTTGGTTGCGGCGAGGGCAAATTGGCACAA
TCCGTGCCCAACAAGGTGTACTCCATGGACTTGGTCGCTGCTCGTAGCGA
CATCATTGCCTGCAACATCACGGATACTCCACTCCAAGCTCGAACTCTGG
ACGTGGCCGTATACTGCCTCTCACTAATGGGCACGGATCTGAACGAGTTC
TTCCTGGAGGCCNATCGAGTGCTCAAGCTGCACGGCACTGTCTATATCG
BO05440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-PA | 1077 | CG7137-RA | 1..883 | 17..899 | 4396 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-RA | 1270 | CG7137-RA | 63..945 | 17..899 | 4404 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19227406..19228288 | 17..899 | 4404 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:39:42 has no hits.
BO05440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:08 Download gff for
BO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:54 Download gff for
BO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:17 Download gff for
BO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 63..945 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:06 Download gff for
BO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 63..945 | 17..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:06 Download gff for
BO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19227406..19228288 | 17..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:17 Download gff for
BO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15114911..15115793 | 17..899 | 99 | | Plus |
BO05440.complete Sequence
1108 bp (1108 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630037
> BO05440.complete
GAAGTTATCAGTCGACATGAAGCCTTTCGAAGTGCCGCCCTGGGAGGAAG
GAGCCGATATCATTGAGTTTGAGCCGGTAAATCCTTCAGGAAATGGAGTT
GCCGCCAAGAAGAAACCAAAGAAGAAGAAACCCAAAAAGAAGAAGGCCGC
TGTGCCAAATGAAAATCTGAATGTGAACAAGGCAGCTGAAAAATTCACTT
ACCGGCAGGGCAGAGGACCTCTTGCCCCGCCCCAAGACTCCTCGGATGAT
GACTACGAAGATGTGGAGGATGGCATCCGGGCCATGCACAAGGTGAAGTC
CGGAAGAATAGAGAAACAGCGACCACCAACGCAGGCCACAAAAGGTGGCA
AAAAAGAACTGAAACTGAAACCCGAACTGGCCCAGGCGGCTTTGGAGGCC
ATGGAGGCCACCAGCTCAACCACGCCGGCTGCAAACTCGTTGGCCAGTAA
GCTGCAATCGGAACTCCTGGGCGGACGTTTCCGATACATCAACGAGCAGC
TCTACTCGACGACCAGTCGCAAGGCGGAGGCACTTTTCCGCAAGGATAGC
TCCGCCTTCGAGGCCTATCACGCTGGCTACCGCCAGCAGGTGGAGAAGTG
GCCCATCAATCCGCTTAATCGCATCATCAAGACCATCAAGAAGATTCCCA
AAACAGCCATAATTGGCGACTTTGGTTGCGGCGAGGGCAAATTGGCACAA
TCCGTGCCCAACAAGGTGTACTCCATGGACTTGGTCGCTGCTCGTAGCGA
CATCATTGCCTGCAACATCACGGATACTCCACTCCAAGCTCGAACTCTGG
ACGTGGCCGTATACTGCCTCTCACTAATGGGCACGGATCTGAACGAGTTC
TTCCTGGAGGCCAATCGAGTGCTCAAGCTGCACGGCACTGTCTATATCGC
GGAGATTCAGTCGCGATTCCAGGATGTGCGGGAGTTTGTGCGTTGCCTCA
ATGCATGTGGATTCGATCTTAACAAGAAGGATGTGGCTGTTAACTATTTC
TACTTCTTCCAATTCAAGAAGATGCGTCATGTGCCCAAGAACACCAAGAT
GAAAGCTTTCTCTCTCAAACCTTGCTTATATCGCAAGCGAGCAAGCTTTC
TAGACCAT
BO05440.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-RA | 1077 | CG7137-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-RA | 1270 | CG7137-RA | 63..1136 | 17..1090 | 5370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19227406..19228479 | 17..1090 | 5370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:19:42 has no hits.
BO05440.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:49 Download gff for
BO05440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 1..1077 | 17..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:08 Download gff for
BO05440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 77..1150 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:29 Download gff for
BO05440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 63..1136 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:49 Download gff for
BO05440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 77..1150 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:24 Download gff for
BO05440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 63..1136 | 17..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:24 Download gff for
BO05440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19227406..19228479 | 17..1092 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:29 Download gff for
BO05440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15114911..15115984 | 17..1092 | 99 | | Plus |
BO05440.pep Sequence
Translation from 16 to 1108
> BO05440.pep
MKPFEVPPWEEGADIIEFEPVNPSGNGVAAKKKPKKKKPKKKKAAVPNEN
LNVNKAAEKFTYRQGRGPLAPPQDSSDDDYEDVEDGIRAMHKVKSGRIEK
QRPPTQATKGGKKELKLKPELAQAALEAMEATSSTTPAANSLASKLQSEL
LGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQQVEKWPINPL
NRIIKTIKKIPKTAIIGDFGCGEGKLAQSVPNKVYSMDLVAARSDIIACN
ITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKLHGTVYIAEIQSR
FQDVREFVRCLNACGFDLNKKDVAVNYFYFFQFKKMRHVPKNTKMKAFSL
KPCLYRKRASFLDH
BO05440.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-PA | 358 | CG7137-PA | 1..358 | 1..358 | 1859 | 100 | Plus |
