Clone Sequence Records
BO05442.3prime Sequence
912 bp (868 high quality bases) assembled on 2005-12-02
> BO05442.3prime
ATGGTCTAGAAAGCTTGCGTACAGGTCATCCTCCATGTTGTGGATGAGTA
TCTTCTTGTCCTCCTTGCAGCTGGACTTGGACAGCGTCTGCTCCACCAGC
TTGGGATCGAAACAGGGAGTTTCGCAGATGTTCATGTTGCAGCAGTTCTC
TATCGTGATCTCGCACTGCTCGGTGGCCAGTGGGCGATTGGTGAGCGGAG
TGTCTCCTGCCGAGTTGGTTCTGGCCTGCTTCCGAACCACAAAGGTCTTC
CTGATGCGTGGGCGCTTCGGTTTGTACAGGCGACGGATTCCTTGAACGAT
CACAGCCACTAGCAGCAAGCTAGAAACGATGCCCACGACGAGAATGATGA
TCACGCTGCTAGTCCACACTCTGGGCGTAAGGCACACCTCCAAATGCTGG
TACTGCGGAATAGCAATGTTGGTGCTATTGTCTTGCGCCAGTTCCTCACA
GATGCTGTGACAACCGAAGGGCACATACATCTCCGGCTCGTGCTTCAACA
GACGACAGAAAAGGGAGCATATCTCCGTGGAGTTCTGCTCGCAGCGAGCT
CCTCCAAACTTGGCTGGACACTCACAGCTGGGCGCTTCGTTCTCGTCCTT
GGACACCCGACAGTGACCACCATTGAGGCACAGTCCGGAGCACACGCTCA
ACTCACAACGCTCGCCCTTGAATCCCGGCTGGCAGTAGCACTTGGGGTAG
GCCAACTCCGACATCTGGCATGTGCCGTGGACGCAGTAGTTGTGGCACTC
GCGGATCTCGCAACGCGATCCCTTAAAGCCAGTCGGGCAGATGCACAGAT
CCGTGGCAGCCCTGTACTCGCCGTCGTTCATGCAACGCTCGTCTTCGAGC
ACCTTTATCTTCTGGTCCAGCAGTGAGCGTATTTCAACTTCCTGCTCTGC
TCGTCCACCGCT
BO05442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12086-PA | 1935 | cue-RA | 1064..1932 | 887..19 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-RA | 2801 | CG12086-RA | 1307..2197 | 908..19 | 4430 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1504388..1504845 | 452..908 | 2240 | 99.8 | Plus |
| 3L | 28110227 | 3L | 1503987..1504320 | 118..451 | 1670 | 100 | Plus |
| 3L | 28110227 | 3L | 1503830..1503928 | 19..117 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:41:40 has no hits.
BO05442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:11 Download gff for
BO05442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-PA | 1037..1935 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:58 Download gff for
BO05442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12086-PA | 1037..1935 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:46 Download gff for
BO05442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 1302..2197 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:01 Download gff for
BO05442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 1302..2197 | 19..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:01 Download gff for
BO05442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1503987..1504320 | 118..451 | 100 | <- | Plus |
| 3L | 1504388..1504850 | 452..912 | 99 | | Plus |
| 3L | 1503830..1503928 | 19..117 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:46 Download gff for
BO05442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1503830..1503928 | 19..117 | 100 | <- | Plus |
| arm_3L | 1503987..1504320 | 118..451 | 100 | <- | Plus |
| arm_3L | 1504388..1504850 | 452..912 | 99 | | Plus |
BO05442.5prime Sequence
864 bp (737 high quality bases) assembled on 2005-12-02
> BO05442.5prime
GAAGTTATCAGTCGACATGATCCGCATCCGATTTGGAATGGATGTGCTGC
TAGTTTTGCTACTTGCCACATGCCTGCTGACCCCTGCACATGGAACGCCA
CTGGAGTGGGACTTTGCCGTCACGCTGAGGACGAAGATCCAGTTCATGGA
CAGTTCCTGGCAGACGATAGCCACCGCCGCCCATGAGTTCGACGAGCTGT
CCGCCCTGACCTTTGATGAGTCGGAGGAGCTGATCTACTTCAATGACCTG
AAGCACCGCAATGGCAGCATATTCTCCCTGAAACGGGATCTCATTGCCGC
CAACCACGTGGCGGAGCAAACGATCGCACGCACGGGTAATGAGTCGGTGG
GAGGACTAGCCTACGACCCACTGAACATGAACCTCTTCTGGTCGGACACC
GAGCAGAGAAAGATCTTCTTTGCACCCATTCACGGCTCTGCGACGCCCCA
GGTTCTGGTGGATCTGAGCGCGGAGGGTGGACGACCAGATGGCGTGGCAG
TCGATGTGTGCCGCCGCAAGCTGTACTGGACGAACTCGAACGTCACGCAT
CCCACTGTGGAGAGGATCAATCTGGATGGCAGCAATAGGACCGTGATCAT
CAGCTCCAACATCGATATGCCCAGGGGAATCGTGGTGGATCAGCTGTCGG
ATCGCCTCTTCTGGATTGACGACCTGAAGGGCGTGTTCTTCTCGGTAGAG
AGCTCCAAACTGGACGGTTCCGATCGTCAGGTGGTGCTGAAGGACAAGCA
CCATGAGCCCCTCAACCTGGCCGTGACCAACGATGCCATCTACTGGACGG
ATCGTACTACCAGGGCCGTTTGGAGTCACCCGAAAGTGCCGGTGATCAAG
GTTACCACCACTAG
BO05442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12086-PA | 1935 | cue-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-RA | 2801 | CG12086-RA | 266..1113 | 17..864 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1505039..1505793 | 864..110 | 3775 | 100 | Minus |
| 3L | 28110227 | 3L | 1516913..1517006 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:19:08 has no hits.
BO05442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:12 Download gff for
BO05442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:43:59 Download gff for
BO05442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12086-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:02 Download gff for
BO05442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 261..1113 | 11..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:04 Download gff for
BO05442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 261..1113 | 11..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:04 Download gff for
BO05442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1516913..1517011 | 11..110 | 97 | | Minus |
| 3L | 1505039..1505792 | 111..864 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:02 Download gff for
BO05442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1505039..1505792 | 111..864 | 100 | <- | Minus |
| arm_3L | 1516913..1517011 | 11..110 | 97 | | Minus |
BO05442.complete Sequence
1966 bp assembled on 2008-08-14
GenBank Submission: FJ630038
> BO05442.complete
GAAGTTATCAGTCGACATGATCCGCATCCGATTTGGAATGGATGTGCTGC
TAGTTTTGCTACTTGCCACATGCCTGCTGACCCCTGCACATGGAACGCCA
CTGGAGTGGGACTTTGCCGTCACGCTGAGGACGAAGATCCAGTTCATGGA
CAGTTCCTGGCAGACGATAGCCACCGCCGCCCATGAGTTCGACGAGCTGT
CCGCCCTGACCTTTGATGAGTCGGAGGAGCTGATCTACTTCAATGACCTG
AAGCACCGCAATGGCAGCATATTCTCCCTGAAACGGGATCTCATTGCCGC
CAACCACGTGGCGGAGCAAACGATCGCACGCACGGGTAATGAGTCGGTGG
GAGGACTAGCCTACGACCCACTGAACATGAACCTCTTCTGGTCGGACACC
GAGCAGAGAAAGATCTTCTTTGCACCCATTCACGGCTCTGCGACGCCCCA
GGTTCTGGTGGATCTGAGCGCGGAGGGTGGACGACCAGATGGCGTGGCAG
TCGATGTGTGCCGCCGCAAGCTGTACTGGACGAACTCGAACGTCACGCAT
CCCACTGTGGAGAGGATCAATCTGGATGGCAGCAATAGGACCGTGATCAT
CAGCTCCAACATCGATATGCCCAGGGGAATCGTGGTGGATCAGCTGTCGG
ATCGCCTCTTCTGGATTGACGACCTGAAGGGCGTGTTCTTCTCGGTAGAG
AGCTCCAAACTGGACGGTTCCGATCGTCAGGTGGTGCTGAAGGACAAGCA
CCATGAGCCCCTCAACCTGGCCGTGACCAACGATGCCATCTACTGGACGG
ATCGTACTACCAGGGCCGTTTGGAGTCACCCGAAAGTGCCGGTGATCAAG
GTTACCACCACTAGCAAGCCAGACGAGGAGGATTCCACTGATTCCACGGA
CTTCAAGGACCCCGAGCCGGTGGCCGAGGACTGTCCGCTGGTGCGCGTTG
CCAATCTTAGCGAGGAAGCGCGAGGAATTGTGGCCCGCACCGGCTTCTAC
CAGAGACTGCAGAAGGACCACCATTGCGCCAGCATTGTGCGGAAGGTGAA
GGAGCGCGTGGACGAGCAGAGCAGGAAGTTTGAAATACGCTCACTGCTGG
ACCAGAAGATAAAGGTGCTCGAAGACGAGCGTTGCATGAACGACGGCGAG
TACAGGGCTGCCACGGATCTGTGCATCTGCCCGACTGGCTTTAAGGGATC
GCGTTGCGAGATCCGCGAGTGCCACAACTACTGCGTCCACGGCACATGCC
AGATGTCGGAGTTGGCCTACCCCAAGTGCTACTGCCAGCCGGGATTCAAG
GGCGAGCGTTGTGAGTTGAGCGTGTGCTCCGGACTGTGCCTCAATGGTGG
TCACTGTCGGGTGTCCAAGGACGAGAACGAAGCGCCCAGCTGTGAGTGTC
CAGCCAAGTTTGGAGGAGCTCGCTGCGAGCAGAACTCCACGGAGATATGC
TCCCTTTTCTGTCGTCTGTTGAAGCACGAGCCGGAGATGTATGTGCCCTT
CGGTTGTCACAGCATCTGTGAGGAACTGGCGCAAGACAATAGCACCAACA
TTGCTATTCCGCAGTACCAGCATTTGGAGGTGTGCCTTACGCCCAGAGTG
TGGACTAGCAGCGTGATCATCATTCTCGTCGTGGGCATCGTTTCTAGCTT
GCTGCTAGTGGCTGTGATCGTTCAAGGAATCCGTCGCCTGTACAAACCGA
AGCGCCCACGCATCAGGAAGACCTTTGTGGTTCGGAAGCAGGCCAGAACC
AACTCGGCAGGAGACACTCCGCTCACCAATCGCCCACTGGCCACCGAGCA
GTGCGAGATCACGATAGAGAACTGCTGCAACATGAACATCTGCGAAACTC
CCTGTTTCGATCCCAAGCTGGTGGAGCAGACGCTGTCCAAGTCCAGCTGC
AAGGAGGACAAGAAGATACTCATCCACAACATGGAGGATGACCTGTACGC
AAGCTTTCTAGACCAT
BO05442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-RA | 1935 | CG12086-PA | 1..1932 | 17..1948 | 9660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-RA | 2801 | CG12086-RA | 266..2197 | 17..1948 | 9660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1504388..1505793 | 1515..110 | 7030 | 100 | Minus |
| 3L | 28110227 | 3L | 1503987..1504320 | 1849..1516 | 1670 | 100 | Minus |
| 3L | 28110227 | 3L | 1503830..1503928 | 1948..1850 | 495 | 100 | Minus |
| 3L | 28110227 | 3L | 1516913..1517006 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:05:35 has no hits.
BO05442.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:10 Download gff for
BO05442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 228..2164 | 11..1948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:11 Download gff for
BO05442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 266..2197 | 17..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:43 Download gff for
BO05442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 233..2164 | 17..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:29 Download gff for
BO05442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 266..2197 | 17..1950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:29 Download gff for
BO05442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1503828..1503928 | 1850..1950 | 98 | <- | Minus |
| 3L | 1503987..1504320 | 1516..1849 | 100 | <- | Minus |
| 3L | 1504388..1505792 | 111..1515 | 100 | <- | Minus |
| 3L | 1516913..1517006 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:11 Download gff for
BO05442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1503828..1503928 | 1850..1950 | 98 | <- | Minus |
| arm_3L | 1503987..1504320 | 1516..1849 | 100 | <- | Minus |
| arm_3L | 1504388..1505792 | 111..1515 | 100 | <- | Minus |
| arm_3L | 1516913..1517006 | 17..110 | 100 | | Minus |
BO05442.pep Sequence
Translation from 16 to 1966
> BO05442.pep
MIRIRFGMDVLLVLLLATCLLTPAHGTPLEWDFAVTLRTKIQFMDSSWQT
IATAAHEFDELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAE
QTIARTGNESVGGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLVDL
SAEGGRPDGVAVDVCRRKLYWTNSNVTHPTVERINLDGSNRTVIISSNID
MPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVVLKDKHHEPLN
LAVTNDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFKDPE
PVAEDCPLVRVANLSEEARGIVARTGFYQRLQKDHHCASIVRKVKERVDE
QSRKFEIRSLLDQKIKVLEDERCMNDGEYRAATDLCICPTGFKGSRCEIR
ECHNYCVHGTCQMSELAYPKCYCQPGFKGERCELSVCSGLCLNGGHCRVS
KDENEAPSCECPAKFGGARCEQNSTEICSLFCRLLKHEPEMYVPFGCHSI
CEELAQDNSTNIAIPQYQHLEVCLTPRVWTSSVIIILVVGIVSSLLLVAV
IVQGIRRLYKPKRPRIRKTFVVRKQARTNSAGDTPLTNRPLATEQCEITI
ENCCNMNICETPCFDPKLVEQTLSKSSCKEDKKILIHNMEDDLYASFLDH
BO05442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-PA | 644 | CG12086-PA | 1..644 | 1..644 | 3429 | 100 | Plus |
| arr-PA | 1678 | CG5912-PA | 438..630 | 63..268 | 254 | 30.6 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 645..840 | 77..274 | 237 | 29.1 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 645..840 | 77..274 | 237 | 29.1 | Plus |
| CG8909-PB | 2009 | CG8909-PB | 645..840 | 77..274 | 237 | 29.1 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 1569..1765 | 64..274 | 217 | 28.9 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 1569..1765 | 64..274 | 217 | 28.9 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 1261..1451 | 63..268 | 212 | 30 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 1261..1451 | 63..268 | 212 | 30 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 957..1170 | 63..298 | 198 | 25.9 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 957..1170 | 63..298 | 198 | 25.9 | Plus |
| arr-PA | 1678 | CG5912-PA | 161..317 | 100..262 | 196 | 29.5 | Plus |
| arr-PA | 1678 | CG5912-PA | 720..932 | 38..265 | 193 | 26.8 | Plus |
