Clone Sequence Records
BO05444.3prime Sequence
919 bp (769 high quality bases) assembled on 2005-12-02
> BO05444.3prime
ATGGTCTAGAAAGCTTGCGTAGGTGAAAAGCATCTCGATGGGTTCCGCCT
CGGCACCCTCCGTCGCATTTACGGACGCCTGGAGCTTGTGCGCTCGCATA
TGAGCGGATAGACCTGCCGCCTGGGCATAGGCATTACCGCAGATCTTGCA
CTTGAACTTCTTGATGCCCAAATGCAGATGCTTGTGGTGATAGAGCGCCT
TCGGGCGGGAGAAGGCCGAATCACATTTGTCGCACTTGTAGGGCTTCTCG
GTGGAATGCATGGCCTGGTGCTCGTTGAGCAGCGACTTGGAGGCAAAGCG
GCGGGCACAGGTCTGGCACTGGAAGGGTTTCTCGCCCGTATGCGTGCGCC
GGTGGACGATCAACGCCTCCCGGTAGCGGGATCTATAGCCGCACAGCTCG
CACACGTAGTTCCGCTCCTCGCTGTGGACCCGCCGATGCGAGGTGAGGTT
GTGCTGGTTGACAAACGACTTGCCGCAGTTCTCGTGCTCACACTTGAATG
TCCTGGCGCCGGAGTGACCCTGCACATGGCGAAGAAGGGATCGCGAGCTT
TTGAACACCTTGTCGCATAGCTGGCAGGCGAACTCCGTGTGCTCCTTGCG
ACGATGCTGGGCCAATGCTCGGTCCACATCGAAGGTGGCTTTGCAGTCGA
CGCACTTGAAGGCCTGCGGAAACGGATGGCTCATCTTTAGGTGGGTGTTT
AGGTATTTCTGCGTCGTGTACCTCCTGTCGCAGTGTGGGCAGTTGTAGTC
CTTTGGTTGGCGCTGCTTCTTAAAAACAGACTGGTGCTCCTCCCCGTCCT
CATCCGGTTGATAGTCTTGCGGATTTTTCACGCCCAACAGAGCCTCCAGA
GCGCACCCCTCGTTGACGGATGCGGAGGAACTGTCATGATCCGGCTGCCA
CATCGTATCGATGGTCTCC
BO05444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-PA | 1332 | CG10959-RA | 429..1329 | 919..19 | 4480 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-RA | 1836 | CG10959-RA | 544..1444 | 919..19 | 4490 | 99.9 | Minus |
CG10959-RB | 1830 | CG10959-RB | 544..1438 | 919..19 | 4390 | 99.2 | Minus |
CG2129-RA | 2017 | CG2129-RA | 1357..1462 | 215..110 | 200 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8149543..8150294 | 770..19 | 3760 | 100 | Minus |
X | 23542271 | X | 8149326..8149476 | 919..769 | 740 | 99.3 | Minus |
X | 23542271 | X | 8147195..8147300 | 215..110 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:34:19 has no hits.
BO05444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:14 Download gff for
BO05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-PA | 429..1332 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:04 Download gff for
BO05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-PA | 429..1332 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:11 Download gff for
BO05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 544..1444 | 19..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:57 Download gff for
BO05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 544..1444 | 19..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:57 Download gff for
BO05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8149326..8149476 | 769..919 | 99 | -> | Minus |
X | 8149545..8150294 | 19..768 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:11 Download gff for
BO05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8043359..8043509 | 769..919 | 99 | -> | Minus |
arm_X | 8043578..8044327 | 19..768 | 100 | | Minus |
BO05444.5prime Sequence
915 bp (867 high quality bases) assembled on 2005-12-02
> BO05444.5prime
GAAGTTATCAGTCGACATGTTGAGACACTGCCTCGCCAACGTCGACTACG
TCCGCCTGCACGCCCAGCAGCAGTTGCGTCCCAAATGCGGCGAGATCTTC
TACGAACCGGAGGCGAATAGATTCCAACTGGTCTGCCTGCTCTGCGACAT
GAAGCACTTTGGATTCGAGGACTTCGCCCGCCATATCCGTAATGTGCACT
TCGACAAGCAGGGCCGACCGCTCACCAAGACGGTCACGGGACTGGGCAGA
CTAGCACGAGAGGAACAGGAGTTCCAAGGGGTCAGCGCAGAACCATTGGC
TGTGGACAGCTTCAAGAAAGAGTACCTGCCCAACGAGGATGTTCTGTCGG
AGGAGGAGGACGCGGAACAGGAGCTGGGACTGGAACAGGACGAGGGCAAT
CCACTACGCATCATGGTGCTCGGGGGTAAACAGTCCGTGGACGAGGAGAC
CATCGATACGATGTGGCAGCCGGATCATGACAGTTCCTCCGCATCCGTCA
ACGAGGGGTGCGCTCTGGAGGCTCTGTTGGGCGTGGAAAATCCGCAAGAC
TATCAACCGGATGAGGACGGGGAGGAGCACCAGTCTGTTTTTAAGAAGCA
GCGCCAACCAAAGGACTACAACTGCCCACACTGCGACAGGAGGTACACGA
CGCAGAAATACCTAAACACCCACCTAAAGATGAGCCATCCGTTTCCGCAG
GCCTTCAAGTGCGTCGACTGCAAAGCCACCTTCGATGTGGACCGAGCATT
GGCCCAGCATCGTCGCAAGGAGCACACGGAGTTCGCCTGCCAGCTATGCG
ACAAGGTGTTCAAAAGCTCGCGATCCCTTCTTCGCCATGTGCAGGGTCAC
TCCGGCGCCAGGACATTCAAGTGTGAGCACGAGAACTGCGGGCAGTCGTT
TGTCACCCAGCACAA
BO05444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-PA | 1332 | CG10959-RA | 1..899 | 17..915 | 4420 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-RA | 1836 | CG10959-RA | 116..1014 | 17..915 | 4450 | 99.7 | Plus |
CG10959-RB | 1830 | CG10959-RB | 116..1008 | 17..915 | 4350 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8148898..8149476 | 17..595 | 2895 | 100 | Plus |
X | 23542271 | X | 8149543..8149864 | 594..915 | 1565 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:19:15 has no hits.
BO05444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:15 Download gff for
BO05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:06 Download gff for
BO05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:04 Download gff for
BO05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 108..1012 | 7..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:23 Download gff for
BO05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 108..1012 | 7..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:23 Download gff for
BO05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8148890..8149476 | 7..595 | 99 | -> | Plus |
X | 8149545..8149862 | 596..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:04 Download gff for
BO05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8042923..8043509 | 7..595 | 99 | -> | Plus |
arm_X | 8043578..8043895 | 596..913 | 99 | | Plus |
BO05444.complete Sequence
1363 bp (1363 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630040
> BO05444.complete
GAAGTTATCAGTCGACATGTTGAGACACTGCCTCGCCAACGTCGACTACG
TCCGCCTGCACGCCCAGCAGCAGTTGCGTCCCAAATGCGGCGAGATCTTC
TACGAACCGGAGGCGAATAGATTCCAACTGGTCTGCCTGCTCTGCGACAT
GAAGCACTTTGGATTCGAGGACTTCGCCCGCCATATCCGTAATGTGCACT
TCGACAAGCAGGGCCGACCGCTCACCAAGACGGTCACGGGACTGGGCAGA
CTAGCACGAGAGGAACAGGAGTTCCAAGGGGTCAGCGCAGAACCATTGGC
TGTGGACAGCTTCAAGAAAGAGTACCTGCCCAACGAGGATGTTCTGTCGG
AGGAGGAGGACGCGGAACAGGAGCTGGGACTGGAACAGGACGAGGGCAAT
CCACTACGCATCATGGTGCTCGGGGGTAAACAGTCCGTGGACGAGGAGAC
CATCGATACGATGTGGCAGCCGGATCATGACAGTTCCTCCGCATCCGTCA
ACGAGGGGTGCGCTCTGGAGGCTCTGTTGGGCGTGGAAAATCCGCAAGAC
TATCAACCGGATGAGGACGGGGAGGAGCACCAGTCTGTTTTTAAGAAGCA
GCGCCAACCAAAGGACTACAACTGCCCACACTGCGACAGGAGGTACACGA
CGCAGAAATACCTAAACACCCACCTAAAGATGAGCCATCCGTTTCCGCAG
GCCTTCAAGTGCGTCGACTGCAAAGCCACCTTCGATGTGGACCGAGCATT
GGCCCAGCATCGTCGCAAGGAGCACACGGAGTTCGCCTGCCAGCTATGCG
ACAAGGTGTTCAAAAGCTCGCGATCCCTTCTTCGCCATGTGCAGGGTCAC
TCCGGCGCCAGGACATTCAAGTGTGAGCACGAGAACTGCGGCAAGTCGTT
TGTCAACCAGCACAACCTCACCTCGCATCGGCGGGTCCACAGCGAGGAGC
GGAACTACGTGTGCGAGCTGTGCGGCTATAGATCCCGCTACCGGGAGGCG
TTGATCGTCCACCGGCGCACGCATACGGGCGAGAAACCCTTCCAGTGCCA
GACCTGTGCCCGCCGCTTTGCCTCCAAGTCGCTGCTCAACGAGCACCAGG
CCATGCATTCCACCGAGAAGCCCTACAAGTGCGACAAATGTGATTCGGCC
TTCTCCCGCCCGAAGGCGCTCTATCACCACAAGCATCTGCATTTGGGCAT
CAAGAAGTTCAAGTGCAAGATCTGCGGTAATGCCTATGCCCAGGCGGCAG
GTCTATCCGCTCATATGCGAGCGCACAAGCTCCAGGCGTCCGTAAATGCG
ACGGAGGGTGCCGAGGCGGAACCCATCGAGATGCTTTTCACCTACGCAAG
CTTTCTAGACCAT
BO05444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-RA | 1332 | CG10959-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
CG10959-RB | 1326 | CG10959-PB | 1..1323 | 17..1345 | 6520 | 99.5 | Plus |
CG2129-RA | 1398 | CG2129-PA | 1247..1352 | 1149..1254 | 200 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-RA | 1836 | CG10959-RA | 116..1444 | 17..1345 | 6645 | 100 | Plus |
CG10959-RB | 1830 | CG10959-RB | 116..1438 | 17..1345 | 6520 | 99.5 | Plus |
CG2129-RA | 2017 | CG2129-RA | 1357..1462 | 1149..1254 | 200 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8149543..8150294 | 594..1345 | 3760 | 100 | Plus |
X | 23542271 | X | 8148898..8149476 | 17..595 | 2895 | 100 | Plus |
X | 23542271 | X | 8147195..8147300 | 1149..1254 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:41:10 has no hits.
BO05444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:37 Download gff for
BO05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 1..1332 | 17..1348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:52 Download gff for
BO05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 21..1357 | 7..1345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:55 Download gff for
BO05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 121..1444 | 22..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:37 Download gff for
BO05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 21..1357 | 7..1345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:27 Download gff for
BO05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 121..1444 | 22..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:27 Download gff for
BO05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8148903..8149476 | 22..595 | 100 | -> | Plus |
X | 8149545..8150294 | 596..1347 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:55 Download gff for
BO05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8042936..8043509 | 22..595 | 100 | -> | Plus |
arm_X | 8043578..8044327 | 596..1347 | 99 | | Plus |
BO05444.pep Sequence
Translation from 16 to 1363
> BO05444.pep
MLRHCLANVDYVRLHAQQQLRPKCGEIFYEPEANRFQLVCLLCDMKHFGF
EDFARHIRNVHFDKQGRPLTKTVTGLGRLAREEQEFQGVSAEPLAVDSFK
KEYLPNEDVLSEEEDAEQELGLEQDEGNPLRIMVLGGKQSVDEETIDTMW
QPDHDSSSASVNEGCALEALLGVENPQDYQPDEDGEEHQSVFKKQRQPKD
YNCPHCDRRYTTQKYLNTHLKMSHPFPQAFKCVDCKATFDVDRALAQHRR
KEHTEFACQLCDKVFKSSRSLLRHVQGHSGARTFKCEHENCGKSFVNQHN
LTSHRRVHSEERNYVCELCGYRSRYREALIVHRRTHTGEKPFQCQTCARR
FASKSLLNEHQAMHSTEKPYKCDKCDSAFSRPKALYHHKHLHLGIKKFKC
KICGNAYAQAAGLSAHMRAHKLQASVNATEGAEAEPIEMLFTYASFLDH
BO05444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-PA | 443 | CG10959-PA | 1..443 | 1..443 | 2408 | 100 | Plus |
CG10959-PB | 441 | CG10959-PB | 1..441 | 1..443 | 2385 | 99.5 | Plus |
CG2129-PA | 465 | CG2129-PA | 17..459 | 23..421 | 668 | 34.2 | Plus |
CG18262-PA | 469 | CG18262-PA | 18..411 | 23..420 | 518 | 31.2 | Plus |
Meics-PB | 571 | CG8474-PB | 170..478 | 89..420 | 406 | 31.5 | Plus |
CG2129-PA | 465 | CG2129-PA | 296..462 | 203..368 | 212 | 30.4 | Plus |