Clone BO05445 Report

Search the DGRC for BO05445

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:45
Vector:pDNR-Dual
Associated Gene/Transcripttws-RA
Protein status:BO05445.pep: validated full length
Sequenced Size:1531

Clone Sequence Records

BO05445.3prime Sequence

841 bp (840 high quality bases) assembled on 2005-12-02

> BO05445.3prime
ATGGTCTAGAAAGCTTGCAAATTTATCCTGAAATATGAAGAGGTTATTGG
TCGCAGCCACGGCGATGATATTTTCTTCGGGGTGCCAGGCGGTGTGCAGG
ATCTTCTTGTTGAAATCTAGACAGTCCACGCTGATCTCATCCTTCTTTCG
TTTGCCGCCAGTGCAAACTTTCCGTGGCTTAAGCACCGTTTTCGGTTTGA
TGATGTCCCTGGACGCCTCTAGCGTCACATCCTTTTTCGAGTTGCGATCG
AAGACGCGGAAGAAGTTGTTGTAGCTTCCGGTCATTATTGAGCTGTCCTT
GCCGTTCCAACAGCACTCGAACTTGTCGAAGATGCAGTCATTCTCGTACA
GCGAGCACAGCTTGGCGCGCAGGTATTCATGAACCGGATAGGTCTCAATG
GGCTTTGTTTCCATATGCAGATCCCACACTTTGATGCTCAAGTAATCCCT
GGAGATCATGTAGCGACCCGAGTTGCTTAGCTTCACATCGCTGATGGAGC
TGATTATTTCGCTGAAAAAGCTGCGATTCGTTGGATTCTCGGGCTCCTCG
AACTGTTTGCTGTGCCGGTCGCATAGCGCCGCCGAACGCATATCACATAA
TCGTATTGTGCCCTTAGAGCTCGAGTAGACAAACACATTGCACTCGGTCG
GATGGAATTCGGCCGCGGTGATCACCTCTGTTAGCTCCTCCATGTTGGTT
GGCTTGATGTCGACAATGTTGTAGCTCTGGTTGACCACCTCCAAGTGCCA
CAGATTGATCCGCAGGTCGTCGGCCGACAAGAAGGTCTCCTGATCCGAAT
TAACGCTTATTGAATTGATGTGATAGGTGTGTGCATTGGCG

BO05445.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6235-PA 1500 tws-RA 675..1497 841..19 4115 100 Minus
CG6235-PF 1500 tws-RF 675..1497 841..19 4115 100 Minus
CG6235-PB 1332 tws-RB 507..1329 841..19 4115 100 Minus
CG6235-PD 1332 tws-RD 507..1329 841..19 4115 100 Minus
CG6235-PE 1332 tws-RE 507..1329 841..19 4115 100 Minus
CG6235-PC 1332 tws-RC 507..1329 841..19 4115 100 Minus
CG6235-PG 1332 tws-RG 507..1329 841..19 4115 100 Minus
CG6235-PH 1332 tws-RH 507..1329 841..19 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
tws-RI 3856 CG6235-RI 1013..1835 841..19 4115 100 Minus
tws-RH 2300 CG6235-RH 972..1794 841..19 4115 100 Minus
tws-RG 2400 CG6235-RG 1079..1901 841..19 4115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10128627..10129086 382..841 2300 100 Plus
3R 32079331 3R 10128150..10128516 19..385 1835 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:04:57 has no hits.

BO05445.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:17 Download gff for BO05445.3prime
Subject Subject Range Query Range Percent Splice Strand
tws-PE 507..1332 18..841 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:06 Download gff for BO05445.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6235-PH 507..1332 18..841 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:37 Download gff for BO05445.3prime
Subject Subject Range Query Range Percent Splice Strand
tws-RC 914..1740 13..841 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:05 Download gff for BO05445.3prime
Subject Subject Range Query Range Percent Splice Strand
tws-RG 1079..1905 13..841 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:05 Download gff for BO05445.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10128146..10128515 13..384 99 <- Plus
3R 10128630..10129086 385..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:37 Download gff for BO05445.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5953868..5954237 13..384 99 <- Plus
arm_3R 5954352..5954808 385..841 100   Plus

BO05445.5prime Sequence

829 bp (824 high quality bases) assembled on 2005-11-29

> BO05445.5prime
GAAGTTATCAGTCGACATGGGTCGCTGGGGACGGCAGAGTCCGGTGCTGG
AGCCGCCGGACCCACAGATGCAGACGACGCCCCCGCCGCCCACTCTGCCG
CCAAGGACGTTTATGCGACAGTCGAGCATCACGAAAATCGGCAACATGCT
CAACACGGCCATCAACATCAATGGAGCCAAGAAGCCAGCAAGTAATGGAG
AGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACGATGATGTC
ACGGATGCAGACATCATATCCTGCGTGGAATTCAATCACGATGGCGAGCT
GCTGGCCACTGGTGACAAGGGCGGTCGCGTCGTCATCTTTCAGCGTGATC
CTGCCTCAAAAGCCGCCAATCCGAGACGCGGCGAATACAATGTCTATTCG
ACATTCCAATCGCACGAGCCCGAATTCGACTACCTCAAGTCCCTGGAGAT
TGAGGAGAAGATAAACAAGATCCGGTGGCTGCAACAAAAGAATCCCGTGC
ACTTTCTGCTCTCGACCAACGACAAGACAGTCAAATTGTGGAAGGTCAGT
GAGCGTGACAAGTCGTTCGGCGGCTACAACACGAAGGAGGAGAACGGACT
GATCCGGGATCCACAGAATGTAACGGCCCTCCGAGTGCCATCCGTGAAGC
AGATACCACTGCTGGTGGAGGCCTCCCCACGGCGCACCTTCGCCAATGCA
CACACCTATCACATCAATTCAATAAGCGTTAATTCGGATCAGGAGACCTT
CTTGTCGGCCGACGACCTGCGGATCAATCTGTGGCACTTGGAGGTGGTCA
ACCAGAGCTACAACATTGTCGACATCAAG

BO05445.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6235-PA 1500 tws-RA 1..813 17..829 4065 100 Plus
CG6235-PF 1500 tws-RF 1..813 17..829 4065 100 Plus
CG6235-PB 1332 tws-RB 8..645 192..829 3190 100 Plus
CG6235-PD 1332 tws-RD 8..645 192..829 3190 100 Plus
CG6235-PE 1332 tws-RE 8..645 192..829 3190 100 Plus
CG6235-PC 1332 tws-RC 8..645 192..829 3190 100 Plus
CG6235-PG 1332 tws-RG 8..645 192..829 3190 100 Plus
CG6235-PH 1332 tws-RH 8..645 192..829 3190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
tws-RI 3856 CG6235-RI 339..1151 17..829 4065 100 Plus
tws-RF 3664 CG6235-RF 147..959 17..829 4065 100 Plus
tws-RA 2520 CG6235-RA 518..1330 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10128948..10129436 829..341 2445 100 Minus
3R 32079331 3R 10134815..10134993 195..17 895 100 Minus
3R 32079331 3R 10129495..10129646 343..192 760 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:25:04 has no hits.

BO05445.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:18 Download gff for BO05445.5prime
Subject Subject Range Query Range Percent Splice Strand
tws-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:08 Download gff for BO05445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6235-PF 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:53 Download gff for BO05445.5prime
Subject Subject Range Query Range Percent Splice Strand
tws-RA 509..1330 9..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:32:26 Download gff for BO05445.5prime
Subject Subject Range Query Range Percent Splice Strand
tws-RA 509..1330 9..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:32:26 Download gff for BO05445.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10128948..10129433 344..829 100 <- Minus
3R 10129495..10129646 192..343 100 <- Minus
3R 10134819..10135002 9..191 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:53 Download gff for BO05445.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5954670..5955155 344..829 100 <- Minus
arm_3R 5955217..5955368 192..343 100 <- Minus
arm_3R 5960541..5960724 9..191 97   Minus

BO05445.complete Sequence

1531 bp (1531 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630041

> BO05445.complete
GAAGTTATCAGTCGACATGGGTCGCTGGGGACGGCAGAGTCCGGTGCTGG
AGCCGCCGGACCCACAGATGCAGACGACGCCCCCGCCGCCCACTCTGCCG
CCAAGGACGTTTATGCGACAGTCGAGCATCACGAAAATCGGCAACATGCT
CAACACGGCCATCAACATCAATGGAGCCAAGAAGCCAGCAAGTAATGGAG
AGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACGATGATGTC
ACGGATGCAGACATCATATCCTGCGTGGAATTCAATCACGATGGCGAGCT
GCTGGCCACTGGTGACAAGGGCGGTCGCGTCGTCATCTTTCAGCGTGATC
CTGCCTCAAAAGCCGCCAATCCGAGACGCGGCGAATACAATGTCTATTCG
ACATTCCAATCGCACGAGCCCGAATTCGACTACCTCAAGTCCCTGGAGAT
TGAGGAGAAGATAAACAAGATCCGGTGGCTGCAACAAAAGAATCCCGTGC
ACTTTCTGCTCTCGACCAACGACAAGACAGTCAAATTGTGGAAGGTCAGT
GAGCGTGACAAGTCGTTCGGCGGCTACAACACGAAGGAGGAGAACGGACT
GATCCGGGATCCACAGAATGTAACGGCCCTCCGAGTGCCATCCGTGAAGC
AGATACCACTGCTGGTGGAGGCCTCCCCACGGCGCACCTTCGCCAATGCA
CACACCTATCACATCAATTCAATAAGCGTTAATTCGGATCAGGAGACCTT
CTTGTCGGCCGACGACCTGCGGATCAATCTGTGGCACTTGGAGGTGGTCA
ACCAGAGCTACAACATTGTCGACATCAAGCCAACCAACATGGAGGAGCTA
ACAGAGGTGATCACCGCGGCCGAATTCCATCCGACCGAGTGCAATGTGTT
TGTCTACTCGAGCTCTAAGGGCACAATACGATTATGTGATATGCGTTCGG
CGGCGCTATGCGACCGGCACAGCAAACAGTTCGAGGAGCCCGAGAATCCA
ACGAATCGCAGCTTTTTCAGCGAAATAATCAGCTCCATCAGCGATGTGAA
GCTAAGCAACTCGGGTCGCTACATGATCTCCAGGGATTACTTGAGCATCA
AAGTGTGGGATCTGCATATGGAAACAAAGCCCATTGAGACCTATCCGGTT
CATGAATACCTGCGCGCCAAGCTGTGCTCGCTGTACGAGAATGACTGCAT
CTTCGACAAGTTCGAGTGCTGTTGGAACGGCAAGGACAGCTCAATAATGA
CCGGAAGCTACAACAACTTCTTCCGCGTCTTCGATCGCAACTCGAAAAAG
GATGTGACGCTAGAGGCGTCCAGGGACATCATCAAACCGAAAACGGTGCT
TAAGCCACGGAAAGTTTGCACTGGCGGCAAACGAAAGAAGGATGAGATCA
GCGTGGACTGTCTAGATTTCAACAAGAAGATCCTGCACACCGCCTGGCAC
CCCGAAGAAAATATCATCGCCGTGGCTGCGACCAATAACCTCTTCATATT
TCAGGATAAATTTGCAAGCTTTCTAGACCAT

BO05445.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
tws-RI 1500 CG6235-PI 1..1497 17..1513 7485 100 Plus
tws-RF 1500 CG6235-PF 1..1497 17..1513 7485 100 Plus
tws-RA 1500 CG6235-PA 1..1497 17..1513 7485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
tws-RI 3856 CG6235-RI 339..1835 17..1513 7485 100 Plus
tws-RF 3664 CG6235-RF 147..1643 17..1513 7485 100 Plus
tws-RA 2520 CG6235-RA 518..2014 17..1513 7485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10128627..10129436 1150..341 4050 100 Minus
3R 32079331 3R 10128150..10128516 1513..1147 1835 100 Minus
3R 32079331 3R 10134815..10134993 195..17 895 100 Minus
3R 32079331 3R 10129495..10129646 343..192 760 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:07:40 has no hits.

BO05445.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:38 Download gff for BO05445.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RF 1..1500 17..1514 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:54 Download gff for BO05445.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RF 138..1647 9..1519 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:33 Download gff for BO05445.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RA 518..2014 17..1515 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:39 Download gff for BO05445.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RF 138..1647 9..1519 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:30 Download gff for BO05445.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RA 518..2014 17..1515 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:30 Download gff for BO05445.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10128146..10128515 1148..1515 99 <- Minus
3R 10128630..10129433 344..1147 100 <- Minus
3R 10129495..10129646 192..343 100 <- Minus
3R 10134819..10134993 17..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:33 Download gff for BO05445.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5953868..5954237 1148..1515 99 <- Minus
arm_3R 5954352..5955155 344..1147 100 <- Minus
arm_3R 5955217..5955368 192..343 100 <- Minus
arm_3R 5960541..5960715 17..191 100   Minus

BO05445.pep Sequence

Translation from 16 to 1531

> BO05445.pep
MGRWGRQSPVLEPPDPQMQTTPPPPTLPPRTFMRQSSITKIGNMLNTAIN
INGAKKPASNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGD
KGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN
KIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQ
NVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADD
LRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSS
KGTIRLCDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSG
RYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFE
CCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKV
CTGGKRKKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKFA
SFLDH

BO05445.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
tws-PI 499 CG6235-PI 1..499 1..499 2650 100 Plus
tws-PF 499 CG6235-PF 1..499 1..499 2650 100 Plus
tws-PA 499 CG6235-PA 1..499 1..499 2650 100 Plus
tws-PH 443 CG6235-PH 2..443 58..499 2336 99.8 Plus
tws-PG 443 CG6235-PG 2..443 58..499 2336 99.8 Plus