Clone BO05447 Report

Search the DGRC for BO05447

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:47
Vector:pDNR-Dual
Associated Gene/Transcriptrept-RA
Protein status:BO05447.pep: validated full length
Sequenced Size:1477

Clone Sequence Records

BO05447.3prime Sequence

454 bp (429 high quality bases) assembled on 2005-12-02

> BO05447.3prime
ATGGTCTAGAAAGCTTGCGTGCTCCATGGGCTGGGCATCTCCTCCGCCGC
CCTCCACGCGACGCTTTGCCCCGCCTCCAGCGGCCGGGTCCCTTTCCACC
TCCTCGGTGATCTCGCTGAACATGTAGTCATCCTGGTACTCCTTGAGGAT
CTTGCTCGAGCGATTCTCGTCCAGGAAGAGCGAGTAGACCTTCTTCACAT
CCTCGGTATTGACTTCGGTGGCCTTGCGGCGACGACAGACCAAGTTGGCT
GTGGTAATCAGTTGGATGGCGTAGCGTAAACTGGTATCTGTGGCGATGCG
TGTAAGAATGGTCAGGGCATCCGGGTGCATGATGCAGTCCTCCTCCTCGC
AGCGAATCTTTAGGATCTCCTTAACCTCCTTCTCGGAATACGGTACAGTG
CGTATGATGATCATGCGATCGAGTAGATCAATGGGTATGCCGTGCGGACT
GCGA

BO05447.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9750-PA 1446 rept-RA 1008..1443 454..19 2180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
rept-RB 1707 CG9750-RB 1183..1618 454..19 2180 100 Minus
rept-RC 1714 CG9750-RC 1125..1560 454..19 2180 100 Minus
rept-RA 1772 CG9750-RA 1183..1618 454..19 2180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19256522..19256957 454..19 2180 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:56:19 has no hits.

BO05447.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:19 Download gff for BO05447.3prime
Subject Subject Range Query Range Percent Splice Strand
rept-PA 1009..1446 18..453 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:09 Download gff for BO05447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9750-PA 1009..1446 18..453 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:19 Download gff for BO05447.3prime
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1184..1618 19..453 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:33 Download gff for BO05447.3prime
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1184..1618 19..453 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:33 Download gff for BO05447.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19256523..19256957 19..453 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:19 Download gff for BO05447.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19249623..19250057 19..453 100   Minus

BO05447.5prime Sequence

498 bp (401 high quality bases) assembled on 2005-12-02

> BO05447.5prime
GAAGTTATCAGTCGACATGGCCGAGACCGAGAAAATCGAGGTTCGCGACG
TGACTCGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGA
CTGGACGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCA
GAAGGACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGG
GCAAGATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGC
AAAACGGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCC
ATTCACTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGA
CCGAGGCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAG
GAGGAAACCGAGATCATCGAGGGCGAAGTGGTGGAGATCCAGATCGAACG
CCCCGCCTCGGGTACCGGACAGAAGGTGGGGCAGGTCACCCTCAAGAC

BO05447.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9750-PA 1446 rept-RA 1..482 17..498 2360 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
rept-RB 1707 CG9750-RB 176..657 17..498 2380 99.6 Plus
rept-RC 1714 CG9750-RC 118..599 17..498 2380 99.6 Plus
rept-RA 1772 CG9750-RA 176..657 17..498 2380 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19255515..19255996 17..498 2380 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 02:40:09 has no hits.

BO05447.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:19 Download gff for BO05447.5prime
Subject Subject Range Query Range Percent Splice Strand
rept-PA 1..482 17..498 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:10 Download gff for BO05447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9750-PA 1..482 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:50 Download gff for BO05447.5prime
Subject Subject Range Query Range Percent Splice Strand
rept-RA 170..657 9..498 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:42 Download gff for BO05447.5prime
Subject Subject Range Query Range Percent Splice Strand
rept-RA 170..657 9..498 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:42 Download gff for BO05447.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19255509..19255996 9..498 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:50 Download gff for BO05447.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19248609..19249096 9..498 98   Plus

BO05447.complete Sequence

1477 bp (1477 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ630042

> BO05447.complete
GAAGTTATCAGTCGACATGGCCGAGACCGAGAAAATCGAGGTTCGCGACG
TGACTCGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGA
CTGGACGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCA
GAAGGACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGG
GCAAGATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGC
AAAACGGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCC
ATTCACTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGA
CCGAGGCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAG
GAGGAAACCGAGATCATCGAGGGCGAAGTGGTGGAGATCCAGATCGAACG
CCCCGCCTCGGGTACCGGACAGAAGGTGGGCAAGGTCACCCTCAAGACCA
CCGAGATGGAAACCAACTACGATCTGGGCAACAAGATCATCGAGTGCTTC
ATGAAAGAGAAGATCCAGGCTGGCGATGTGATCACCATCGACAAGGCGTC
CGGAAAGGTCAACAAGCTGGGTCGCAGCTTCACCAGAGCCAGGGACTACG
ACGCCACTGGCGCTCAGACCAGATTCGTCCAATGCCCCGAGGGTGAGCTT
CAAAAACGCAAGGAGGTGGTGCACACTGTGACCCTACACGAGATCGATGT
TATCAATAGTCGCACCCACGGGTTCTTGGCCCTGTTCTCCGGCGATACTG
GAGAGATCAAGCAGGAGGTTCGCGATCAGATCAACAACAAGGTTCTCGAG
TGGCGCGAGGAGGGCAAAGCTGAGATAAATCCGGGAGTACTCTTCATAGA
CGAGGTGCACATGCTGGACATTGAGTGCTTCTCCTTCCTGAATCGCGCCC
TGGAGTCGGACATGGCTCCGGTGGTGGTGATGGCCACCAACCGCGGCATC
ACTCGTATTAGGGGCACTAACTATCGCAGTCCGCACGGCATACCCATTGA
TCTACTCGATCGCATGATCATCATACGCACTGTACCGTATTCCGAGAAGG
AGGTTAAGGAGATCCTAAAGATTCGCTGCGAGGAGGAGGACTGCATCATG
CACCCGGATGCCCTGACCATTCTTACACGCATCGCCACAGATACCAGTTT
ACGCTACGCCATCCAACTGATTACCACAGCCAACTTGGTCTGTCGTCGCC
GCAAGGCCACCGAAGTCAATACCGAGGATGTGAAGAAGGTCTACTCGCTC
TTCCTGGACGAGAATCGCTCGAGCAAGATCCTCAAGGAGTACCAGGATGA
CTACATGTTCAGCGAGATCACCGAGGAGGTGGAAAGGGACCCGGCCGCTG
GAGGCGGGGCAAAGCGTCGCGTGGAGGGCGGCGGAGGAGATGCCCAGCCC
ATGGAGCACGCAAGCTTTCTAGACCAT

BO05447.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
rept-RB 1446 CG9750-PB 1..1443 17..1459 7215 100 Plus
rept-RC 1446 CG9750-PC 1..1443 17..1459 7215 100 Plus
rept-RA 1446 CG9750-PA 1..1443 17..1459 7215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
rept-RB 1707 CG9750-RB 176..1618 17..1459 7215 100 Plus
rept-RC 1714 CG9750-RC 118..1560 17..1459 7215 100 Plus
rept-RA 1772 CG9750-RA 176..1618 17..1459 7215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19255515..19256957 17..1459 7215 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:02:40 has no hits.

BO05447.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:28 Download gff for BO05447.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1..1446 17..1460 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:51 Download gff for BO05447.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 162..1610 9..1459 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:23 Download gff for BO05447.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 176..1618 17..1461 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:29 Download gff for BO05447.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 162..1610 9..1459 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:24 Download gff for BO05447.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 176..1618 17..1461 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:24 Download gff for BO05447.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19255515..19256957 17..1461 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:23 Download gff for BO05447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19248615..19250057 17..1461 99   Plus

BO05447.pep Sequence

Translation from 16 to 1477

> BO05447.pep
MAETEKIEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARR
AAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMS
GSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPASGT
GQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNK
LGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRT
HGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHML
DIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRM
IIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQ
LITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSE
ITEEVERDPAAGGGAKRRVEGGGGDAQPMEHASFLDH

BO05447.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
rept-PB 481 CG9750-PB 1..481 1..481 2427 100 Plus
rept-PC 481 CG9750-PC 1..481 1..481 2427 100 Plus
rept-PA 481 CG9750-PA 1..481 1..481 2427 100 Plus
pont-PA 456 CG4003-PA 5..455 8..447 980 45.3 Plus