Clone Sequence Records
BO05447.3prime Sequence
454 bp (429 high quality bases) assembled on 2005-12-02
> BO05447.3prime
ATGGTCTAGAAAGCTTGCGTGCTCCATGGGCTGGGCATCTCCTCCGCCGC
CCTCCACGCGACGCTTTGCCCCGCCTCCAGCGGCCGGGTCCCTTTCCACC
TCCTCGGTGATCTCGCTGAACATGTAGTCATCCTGGTACTCCTTGAGGAT
CTTGCTCGAGCGATTCTCGTCCAGGAAGAGCGAGTAGACCTTCTTCACAT
CCTCGGTATTGACTTCGGTGGCCTTGCGGCGACGACAGACCAAGTTGGCT
GTGGTAATCAGTTGGATGGCGTAGCGTAAACTGGTATCTGTGGCGATGCG
TGTAAGAATGGTCAGGGCATCCGGGTGCATGATGCAGTCCTCCTCCTCGC
AGCGAATCTTTAGGATCTCCTTAACCTCCTTCTCGGAATACGGTACAGTG
CGTATGATGATCATGCGATCGAGTAGATCAATGGGTATGCCGTGCGGACT
GCGA
BO05447.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9750-PA | 1446 | rept-RA | 1008..1443 | 454..19 | 2180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-RB | 1707 | CG9750-RB | 1183..1618 | 454..19 | 2180 | 100 | Minus |
rept-RC | 1714 | CG9750-RC | 1125..1560 | 454..19 | 2180 | 100 | Minus |
rept-RA | 1772 | CG9750-RA | 1183..1618 | 454..19 | 2180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19256522..19256957 | 454..19 | 2180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:56:19 has no hits.
BO05447.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:19 Download gff for
BO05447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-PA | 1009..1446 | 18..453 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:09 Download gff for
BO05447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9750-PA | 1009..1446 | 18..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:19 Download gff for
BO05447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 1184..1618 | 19..453 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:33 Download gff for
BO05447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 1184..1618 | 19..453 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:33 Download gff for
BO05447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19256523..19256957 | 19..453 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:19 Download gff for
BO05447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19249623..19250057 | 19..453 | 100 | | Minus |
BO05447.5prime Sequence
498 bp (401 high quality bases) assembled on 2005-12-02
> BO05447.5prime
GAAGTTATCAGTCGACATGGCCGAGACCGAGAAAATCGAGGTTCGCGACG
TGACTCGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGA
CTGGACGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCA
GAAGGACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGG
GCAAGATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGC
AAAACGGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCC
ATTCACTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGA
CCGAGGCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAG
GAGGAAACCGAGATCATCGAGGGCGAAGTGGTGGAGATCCAGATCGAACG
CCCCGCCTCGGGTACCGGACAGAAGGTGGGGCAGGTCACCCTCAAGAC
BO05447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9750-PA | 1446 | rept-RA | 1..482 | 17..498 | 2360 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-RB | 1707 | CG9750-RB | 176..657 | 17..498 | 2380 | 99.6 | Plus |
rept-RC | 1714 | CG9750-RC | 118..599 | 17..498 | 2380 | 99.6 | Plus |
rept-RA | 1772 | CG9750-RA | 176..657 | 17..498 | 2380 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19255515..19255996 | 17..498 | 2380 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:40:09 has no hits.
BO05447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:19 Download gff for
BO05447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-PA | 1..482 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:10 Download gff for
BO05447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9750-PA | 1..482 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:50 Download gff for
BO05447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 170..657 | 9..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:42 Download gff for
BO05447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 170..657 | 9..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:42 Download gff for
BO05447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19255509..19255996 | 9..498 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:50 Download gff for
BO05447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19248609..19249096 | 9..498 | 98 | | Plus |
BO05447.complete Sequence
1477 bp (1477 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ630042
> BO05447.complete
GAAGTTATCAGTCGACATGGCCGAGACCGAGAAAATCGAGGTTCGCGACG
TGACTCGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGA
CTGGACGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCA
GAAGGACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGG
GCAAGATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGC
AAAACGGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCC
ATTCACTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGA
CCGAGGCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAG
GAGGAAACCGAGATCATCGAGGGCGAAGTGGTGGAGATCCAGATCGAACG
CCCCGCCTCGGGTACCGGACAGAAGGTGGGCAAGGTCACCCTCAAGACCA
CCGAGATGGAAACCAACTACGATCTGGGCAACAAGATCATCGAGTGCTTC
ATGAAAGAGAAGATCCAGGCTGGCGATGTGATCACCATCGACAAGGCGTC
CGGAAAGGTCAACAAGCTGGGTCGCAGCTTCACCAGAGCCAGGGACTACG
ACGCCACTGGCGCTCAGACCAGATTCGTCCAATGCCCCGAGGGTGAGCTT
CAAAAACGCAAGGAGGTGGTGCACACTGTGACCCTACACGAGATCGATGT
TATCAATAGTCGCACCCACGGGTTCTTGGCCCTGTTCTCCGGCGATACTG
GAGAGATCAAGCAGGAGGTTCGCGATCAGATCAACAACAAGGTTCTCGAG
TGGCGCGAGGAGGGCAAAGCTGAGATAAATCCGGGAGTACTCTTCATAGA
CGAGGTGCACATGCTGGACATTGAGTGCTTCTCCTTCCTGAATCGCGCCC
TGGAGTCGGACATGGCTCCGGTGGTGGTGATGGCCACCAACCGCGGCATC
ACTCGTATTAGGGGCACTAACTATCGCAGTCCGCACGGCATACCCATTGA
TCTACTCGATCGCATGATCATCATACGCACTGTACCGTATTCCGAGAAGG
AGGTTAAGGAGATCCTAAAGATTCGCTGCGAGGAGGAGGACTGCATCATG
CACCCGGATGCCCTGACCATTCTTACACGCATCGCCACAGATACCAGTTT
ACGCTACGCCATCCAACTGATTACCACAGCCAACTTGGTCTGTCGTCGCC
GCAAGGCCACCGAAGTCAATACCGAGGATGTGAAGAAGGTCTACTCGCTC
TTCCTGGACGAGAATCGCTCGAGCAAGATCCTCAAGGAGTACCAGGATGA
CTACATGTTCAGCGAGATCACCGAGGAGGTGGAAAGGGACCCGGCCGCTG
GAGGCGGGGCAAAGCGTCGCGTGGAGGGCGGCGGAGGAGATGCCCAGCCC
ATGGAGCACGCAAGCTTTCTAGACCAT
BO05447.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-RB | 1446 | CG9750-PB | 1..1443 | 17..1459 | 7215 | 100 | Plus |
rept-RC | 1446 | CG9750-PC | 1..1443 | 17..1459 | 7215 | 100 | Plus |
rept-RA | 1446 | CG9750-PA | 1..1443 | 17..1459 | 7215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-RB | 1707 | CG9750-RB | 176..1618 | 17..1459 | 7215 | 100 | Plus |
rept-RC | 1714 | CG9750-RC | 118..1560 | 17..1459 | 7215 | 100 | Plus |
rept-RA | 1772 | CG9750-RA | 176..1618 | 17..1459 | 7215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19255515..19256957 | 17..1459 | 7215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:02:40 has no hits.
BO05447.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:28 Download gff for
BO05447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 1..1446 | 17..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:51 Download gff for
BO05447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 162..1610 | 9..1459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:23 Download gff for
BO05447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 176..1618 | 17..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:29 Download gff for
BO05447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 162..1610 | 9..1459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:24 Download gff for
BO05447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 176..1618 | 17..1461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:24 Download gff for
BO05447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19255515..19256957 | 17..1461 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:23 Download gff for
BO05447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19248615..19250057 | 17..1461 | 99 | | Plus |
BO05447.pep Sequence
Translation from 16 to 1477
> BO05447.pep
MAETEKIEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARR
AAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMS
GSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPASGT
GQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNK
LGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRT
HGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHML
DIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRM
IIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQ
LITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSE
ITEEVERDPAAGGGAKRRVEGGGGDAQPMEHASFLDH
BO05447.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-PB | 481 | CG9750-PB | 1..481 | 1..481 | 2427 | 100 | Plus |
rept-PC | 481 | CG9750-PC | 1..481 | 1..481 | 2427 | 100 | Plus |
rept-PA | 481 | CG9750-PA | 1..481 | 1..481 | 2427 | 100 | Plus |
pont-PA | 456 | CG4003-PA | 5..455 | 8..447 | 980 | 45.3 | Plus |