Clone BO05449 Report

Search the DGRC for BO05449

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG2614-RA
Protein status:BO05449.pep: Imported from assembly
Sequenced Size:2053

Clone Sequence Records

BO05449.3prime Sequence

813 bp (785 high quality bases) assembled on 2005-12-02

> BO05449.3prime
ATGGTCTAGAAAGCTTGCTATTTTCAACTCGCTGAGGAACTCTGCCACCT
CAAGGGCGTCTTCACTAGCCAGCTTTGTCTCCTTGACGGCACTGTTTAAT
CCTCGACCAGCGGTTCCCATGTTTTTCTTCCACTGCTCGACAGTTTTGTA
CTTTTCATCGTTGGCACAATATATTATCTCGTTGATGTCTTCCTCTAGTT
TGTAGCTGCACACAGCAGGAAAGACTTTGTGCAGATTGTTGAGAGCCTCT
GTGCGAAGGCTCTCATCGCGACACACGAGATTTAGCATAAAGAGACCTTT
CGGACCGATAATCTCCTTTATGTGCTGCAGGATCTTCGTAGCTAGGAAGC
TTTGGGGCGGACAACTCATTCCCAAACTGAGATCCTTGCTGTCTACATCG
AACAACACGGCATCGAAGTGGATATCTTCATTGCGACATCGCTCAACGAA
ATCCAAGCCATCATCGATAACCACATGAAAGCGTTTGTCCTGCTTGAGCT
CAAAATACTGCTCAGCCACCTCCAACATTATAGGATCAATTTCGACGGCC
GTTATTCTAGCTTGCGGCAAAGCGGCGTGAAGAAAGCTGCACAGACCGCC
GCCTCCCAAGCCGACGACGAGAACATCCTTTTCCACATCTCTTTTGGGAT
GCTGCACCGTTGTGGCCAGTTGGACACCCACGGACATGTACAAATGATGC
TGGCAGGCTAGGTAGCCGAAGTCAATCTTCTTTCGATCCTTTTTGCCTTT
GATTTTGACTGTTTTAACTAAGGCTTCCGATTGCACAACAAACTGATTGC
TGAGAAAAATAAG

BO05449.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-PA 2022 CG2614-RA 1225..2019 813..19 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-RA 2246 CG2614-RA 1309..2103 813..19 3975 100 Minus
CG2614-RC 2234 CG2614-RC 1309..2091 813..19 3785 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20658667..20659075 427..19 2045 100 Minus
2L 23513712 2L 20658210..20658405 760..565 980 100 Minus
2L 23513712 2L 20658462..20658601 565..426 700 100 Minus
2L 23513712 2L 20658101..20658155 813..759 275 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:17:49 has no hits.

BO05449.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:22 Download gff for BO05449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2614-PA 1225..2022 15..813 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:14 Download gff for BO05449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2614-PA 1225..2022 15..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:55:38 Download gff for BO05449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 1309..2111 10..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:32 Download gff for BO05449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 1309..2111 10..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:32 Download gff for BO05449.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20658101..20658155 759..813 100 -> Minus
2L 20658212..20658404 566..758 100 -> Minus
2L 20658462..20658601 426..565 100 -> Minus
2L 20658669..20659079 14..425 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:55:38 Download gff for BO05449.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20658101..20658155 759..813 100 -> Minus
arm_2L 20658212..20658404 566..758 100 -> Minus
arm_2L 20658462..20658601 426..565 100 -> Minus
arm_2L 20658669..20659079 14..425 99 -> Minus

BO05449.5prime Sequence

877 bp (771 high quality bases) assembled on 2005-12-02

> BO05449.5prime
GAAGTTATCAGTCGACATGAATTTACTGCCCAAAACCCGCGAGGAGTTCG
CACAGACCGATTACTGGAACGAATTCTTCAAGAAGCGCGGTGAGAAGGCC
TTCGAATGGTACGGCGAATACCTGGAGTTGTGCGACCAGATCCACAAATA
CATCAAGCCGGCGGATAGGATTTTGATGCTGGGATGCGGTAACTCCAAAT
TGAGCATGGATATGTACGACACAGGATTTCGGGATATCACAAACATAGAT
ATATCTCCCATCGCTGTGAAGAAAATGCTGGAACTGAATGCCAAATCGCG
GCCGGAAATGAAGTTTCTGCAAATGGACGCGACAGCAATGACGTTCCCGG
ATGAAAGCTTTTCGGTGTCGTTGGACAAGGGAACGCTGGATGCTCTGTTT
GCCGACGACGAACCTGAAACGAGAGCGGTGGTGGAAAACTATTTCAAGGA
AATACTAAGAACCATGAGGAACGGTGGTCGCTATGTGGGTATCTCCCTGC
TGCAAGAGCACATCCTCAATTTCCTACTGGACTTCCTGCCCAAGCACAAT
TGCATGCTGAGGATTGTTCACTGCTTGGGGGTGGAACAGGCCAACAAAGA
GAAGAATGCCGATGATGCCTTGACGCTGCCTGTTTTCGTAGTCGTCGCTA
CTAAATTTAAGAGCCTTCCAATGCCAGTACTCGAATTTGGTTTCGGCAAC
GACAAGATGCAAAGATTCACCACGGTCTCCGAACTGAATAGCGCAGTTTC
ATCAGTCCAAAAGGCCGCTTTGGTTTGCAACGGTCTAGCCAGATCCAACA
TAGCTGGTCACAATGAGGTGATCATGGATCTGCACCGACCATCTGAGCAA
CCCCTCGCTATACTATCCACATACTGG

BO05449.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-PA 2022 CG2614-RA 1..834 17..850 4170 100 Plus
CG2614-PA 2022 CG2614-RA 834..862 849..877 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-RC 2234 CG2614-RC 84..946 16..877 4290 99.9 Plus
CG2614-RA 2246 CG2614-RA 84..946 16..877 4290 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20656972..20657210 231..469 1195 100 Plus
2L 23513712 2L 20657262..20657477 463..678 1065 99.5 Plus
2L 23513712 2L 20657537..20657738 677..877 960 99.5 Plus
2L 23513712 2L 20656707..20656831 108..232 625 100 Plus
2L 23513712 2L 20656509..20656606 16..113 490 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:50:46 has no hits.

BO05449.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:23 Download gff for BO05449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2614-PA 1..862 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:15 Download gff for BO05449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2614-PA 1..862 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:55 Download gff for BO05449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 84..946 16..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:43 Download gff for BO05449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 84..946 16..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:43 Download gff for BO05449.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20656973..20657209 232..468 100 -> Plus
2L 20657268..20657475 469..676 100 -> Plus
2L 20657537..20657738 677..877 99   Plus
2L 20656509..20656601 16..108 100 -> Plus
2L 20656708..20656830 109..231 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:55 Download gff for BO05449.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20656708..20656830 109..231 100 -> Plus
arm_2L 20656973..20657209 232..468 100 -> Plus
arm_2L 20657268..20657475 469..676 100 -> Plus
arm_2L 20657537..20657738 677..877 99   Plus
arm_2L 20656509..20656601 16..108 100 -> Plus

BO05449.complete Sequence

2053 bp assembled on 2008-11-10

GenBank Submission: KX797640

> BO05449.complete
GAAGTTATCAGTCGACATGAATTTACTGCCCAAAACCCGCGAGGAGTTCG
CACAGACCGATTACTGGAACGAATTCTTCAAGAAGCGCGGTGAGAAGGCC
TTCGAATGGTACGGCGAATACCTGGAGTTGTGCGACCAGATCCACAAATA
CATCAAGCCGGCGGATAGGATTTTGATGCTGGGATGCGGTAACTCCAAAT
TGAGCATGGATATGTACGACACAGGATTTCGGGATATCACAAACATAGAT
ATATCTCCCATCGCTGTGAAGAAAATGCTGGAACTGAATGCCAAATCGCG
GCCGGAAATGAAGTTTCTGCAAATGGACGCGACAGCAATGACGTTCCCGG
ATGAAAGCTTTTCGGTGTCGTTGGACAAGGGAACGCTGGATGCTCTGTTT
GCCGACGACGAACCTGAAACGAGAGCGGTGGTGGAAAACTATTTCAAGGA
AATACTAAGAACCATGAGGAACGGTGGTCGCTATGTGGGTATCTCCCTGC
TGCAAGAGCACATCCTCAATTTCCTACTGGACTTCCTGCCCAAGCACAAT
TGCATGCTGAGGATTGTTCACTGCTTGGGGGTGGAACAGGCCAACAAAGA
GAAGAATGCCGATGATGCCTTGACGCTGCCTGTTTTCGTAGTCGTCGCTA
CTAAATTTAAGAGCCTTCCAATGCCAGTACTCGAATTTGGTTTCGGCAAC
GACAAGATGCAAAGATTCACCACGGTCTCCGAACTGAATAGCGCAGTTTC
ATCAGTCCAAAAGGCCGCTTTGGTTTGCAACGGTCTAGCCAGATCCAACA
TAGCTGGTCACAATGAGGTGATCATGGATCTGCACCGACCATCTGAGCAA
ACCCCTCGCTATACTATCCACATACTGGATAAGCCGCCAGCTCGCGGCCT
GGGCAAATACGCGGCGTTTATCGTTCCTCAGGGAAGAGAGGTGGAGTGGA
TTTTTTCCACGCCTGCGGGCCGGAAAAAGCTCCAGGACTCCGCCAACTTC
CAACGACTGGCTGTGGTTACCCTTCATAGAGATCAGGTTTACAGTACCTT
AGACGAAGTGAAGCAAGAGTTGGCCGACAGCATAAAGAACCTATCGCCAG
CTGGACTCACTGATCAGATACCGTATCTAAGTCTTGGATCCGATGTGGGC
AAAAGGGAGACTCTTATTTGTGGGTTCTCTAAGATATCTGGAGATTTCCG
CATCGAGGAAGTGGAGGCCAATGGCAAGACCCTGCGACGCCTTATTTTTC
TCAGCAATCAGTTTGTTGTGCAATCGGAAGCCTTAGTTAAAACAGTCAAA
ATCAAAGGCAAAAAGGATCGAAAGAAGATTGACTTCGGCTACCTAGCCTG
CCAGCATCATTTGTACATGTCCGTGGGTGTCCAACTGGCCACAACGGTGC
AGCATCCCAAAAGAGATGTGGAAAAGGATGTTCTCGTCGTCGGCTTGGGA
GGCGGCGGTCTGTGCAGCTTTCTTCACGCCGCTTTGCCGCAAGCTAGAAT
AACGGCCGTCGAAATTGATCCTATAATGTTGGAGGTGGCTGAGCAGTATT
TTGAGCTCAAGCAGGACAAACGCTTTCATGTGGTTATCGATGATGGCTTG
GATTTCGTTGAGCGATGTCGCAATGAAGATATCCACTTCGATGCCGTGTT
GTTCGATGTAGACAGCAAGGATCTCAGTTTGGGAATGAGTTGTCCGCCCC
AAAGCTTCCTAGCTACGAAGATCCTGCAGCACATAAAGGAGATTATCGGT
CCGAAAGGTCTCTTTATGCTAAATCTCGTGTGTCGCGATGAGAGCCTTCG
CACAGAGGCTCTCAACAATCTGCACAAAGTCTTTCCTGCTGTGTGCAGCT
ACAAACTAGAGGAAGACATCAACGAGATAATATATTGTGCCAACGATGAA
AAGTACAAAACTGTCGAGCAGTGGAAGAAAAACATGGGAACCGCTGGTCG
AGGATTAAACAGTGCCGTCAAGGAGACAAAGCTGGCTAGTGAAGACGCCC
TTGAGGTGGCAGAGTTCCTCAGCGAGTTGAAAATAGCAAGCTTTCTAGAC
CAT

BO05449.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-RA 2022 CG2614-PA 1..2019 17..2035 10095 100 Plus
CG2614-RC 2010 CG2614-PC 1..2007 17..2035 9880 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-RA 2246 CG2614-RA 84..2103 16..2035 10100 100 Plus
CG2614-RC 2234 CG2614-RC 84..2091 16..2035 9885 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20657537..20658155 677..1295 3095 100 Plus
2L 23513712 2L 20658667..20659075 1627..2035 2045 100 Plus
2L 23513712 2L 20656972..20657210 231..469 1195 100 Plus
2L 23513712 2L 20657262..20657477 463..678 1065 99.5 Plus
2L 23513712 2L 20658210..20658405 1294..1489 980 100 Plus
2L 23513712 2L 20658462..20658601 1489..1628 700 100 Plus
2L 23513712 2L 20656707..20656831 108..232 625 100 Plus
2L 23513712 2L 20656509..20656606 16..113 490 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:37:11 has no hits.

BO05449.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:41 Download gff for BO05449.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 82..2109 16..2044 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:16 Download gff for BO05449.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 85..2103 17..2037 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:03 Download gff for BO05449.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 83..2101 17..2037 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:03 Download gff for BO05449.complete
Subject Subject Range Query Range Percent Splice Strand
CG2614-RA 85..2103 17..2037 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:03 Download gff for BO05449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20658462..20658601 1489..1628 100 -> Plus
2L 20656510..20656601 17..108 100 -> Plus
2L 20656708..20656830 109..231 100 -> Plus
2L 20656973..20657209 232..468 100 -> Plus
2L 20657268..20657475 469..676 100 -> Plus
2L 20657537..20658155 677..1295 100 -> Plus
2L 20658212..20658404 1296..1488 100 -> Plus
2L 20658669..20659075 1629..2037 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:16 Download gff for BO05449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20658669..20659075 1629..2037 99   Plus
arm_2L 20657268..20657475 469..676 100 -> Plus
arm_2L 20656510..20656601 17..108 100 -> Plus
arm_2L 20656708..20656830 109..231 100 -> Plus
arm_2L 20656973..20657209 232..468 100 -> Plus
arm_2L 20657537..20658155 677..1295 100 -> Plus
arm_2L 20658212..20658404 1296..1488 100 -> Plus
arm_2L 20658462..20658601 1489..1628 100 -> Plus

BO05449.pep Sequence

Translation from 16 to 2053

> BO05449.pep
MNLLPKTREEFAQTDYWNEFFKKRGEKAFEWYGEYLELCDQIHKYIKPAD
RILMLGCGNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKF
LQMDATAMTFPDESFSVSLDKGTLDALFADDEPETRAVVENYFKEILRTM
RNGGRYVGISLLQEHILNFLLDFLPKHNCMLRIVHCLGVEQANKEKNADD
ALTLPVFVVVATKFKSLPMPVLEFGFGNDKMQRFTTVSELNSAVSSVQKA
ALVCNGLARSNIAGHNEVIMDLHRPSEQTPRYTIHILDKPPARGLGKYAA
FIVPQGREVEWIFSTPAGRKKLQDSANFQRLAVVTLHRDQVYSTLDEVKQ
ELADSIKNLSPAGLTDQIPYLSLGSDVGKRETLICGFSKISGDFRIEEVE
ANGKTLRRLIFLSNQFVVQSEALVKTVKIKGKKDRKKIDFGYLACQHHLY
MSVGVQLATTVQHPKRDVEKDVLVVGLGGGGLCSFLHAALPQARITAVEI
DPIMLEVAEQYFELKQDKRFHVVIDDGLDFVERCRNEDIHFDAVLFDVDS
KDLSLGMSCPPQSFLATKILQHIKEIIGPKGLFMLNLVCRDESLRTEALN
NLHKVFPAVCSYKLEEDINEIIYCANDEKYKTVEQWKKNMGTAGRGLNSA
VKETKLASEDALEVAEFLSELKIASFLDH

BO05449.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2614-PA 673 CG2614-PA 1..673 1..673 3475 100 Plus
CG2614-PC 669 CG2614-PC 1..669 1..673 3442 99.4 Plus