Clone Sequence Records
BO05453.5prime Sequence
365 bp (288 high quality bases) assembled on 2005-12-02
> BO05453.5prime
GAAGTTATCAGTCGACATGAGCGAGCCTGACCCGCAGGAACTGGGAGCTG
AGGTGGTCAGCGGATTGGTGGCGACCAGCGACGACCGCCTGGAGATGATC
AACGCCGAGTACACGAACCTATGCCGGGATCTAAACATGGATCGGCAGAC
AGAGCTGCAGGGCTACGAGACGTACTTAGAGGTGTCCCAGAGGTGCTCCA
TGGAGGGCACAGCCAGCCACTGGATGTGCTGCGCCATTTACACGGCCTGC
CGAAGAACCAGCACACCCACGGTGACTGGCCAGAATGCAGTGGTCAAGGG
TAATTGTGTGTCCCTTAACAATTTGCTGCGCTGCTGCAAGATGAGCATCT
ACGAGTTCAAGACCA
BO05453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7413-PA | 2538 | Rbf-RA | 1..349 | 17..365 | 1695 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-RA | 3619 | CG7413-RA | 692..1043 | 14..365 | 1730 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 800596..800788 | 206..14 | 965 | 100 | Minus |
| X | 23542271 | X | 800378..800519 | 345..204 | 680 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:52:40 has no hits.
BO05453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:30 Download gff for
BO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-PA | 1..348 | 17..364 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:27 Download gff for
BO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7413-PA | 1..348 | 17..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:02 Download gff for
BO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 687..1042 | 8..364 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:29 Download gff for
BO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 687..1042 | 8..364 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:29 Download gff for
BO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 800597..800793 | 8..205 | 98 | | Minus |
| X | 800298..800316 | 346..364 | 100 | <- | Minus |
| X | 800378..800517 | 206..345 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:02 Download gff for
BO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 694331..694349 | 346..364 | 100 | <- | Minus |
| arm_X | 694411..694550 | 206..345 | 98 | <- | Minus |
| arm_X | 694630..694826 | 8..205 | 98 | | Minus |
BO05453.3prime Sequence
330 bp (245 high quality bases) assembled on 2005-12-02
> BO05453.3prime
ATGGTCTAGAAAGCTTGCTGTCTCGTGTTCTCCTCCTTCGCCCCCTACGC
AACCTTCCGTGGTAACAGCAGTCTGCTGCTCGGCTGACTGCAGTTCAGGG
TCGTCCATGACGGCCTTGACCTGGCTGATTTTCGAGCGCTTCGTCTCTGC
CATTGTACCTAGTCCGGGCTCGTCGCCAAAGCTCAGCATGCGCTTGCCGC
CGCGTACCTTTTCGTTCATAGCCTGAAGGTCCTTGGCGGGGCTGCGGCAA
AAACTGTAGACCATCTGGTTGGGCGACTGCTGTATCTCGTTCTTGGACAT
CTGCGACACGAACAGCGAGTGGCTCTGGGT
BO05453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7413-PA | 2538 | Rbf-RA | 2224..2535 | 330..19 | 1560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-RA | 3619 | CG7413-RA | 2918..3229 | 330..19 | 1560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 797480..797694 | 19..233 | 1075 | 100 | Plus |
| X | 23542271 | X | 797761..797860 | 231..330 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:52:35 has no hits.
BO05453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:30 Download gff for
BO05453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-PA | 2224..2538 | 18..330 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:25 Download gff for
BO05453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7413-PA | 2224..2538 | 18..330 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:01 Download gff for
BO05453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 2918..3229 | 19..330 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:14 Download gff for
BO05453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 2918..3229 | 19..330 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:14 Download gff for
BO05453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 797480..797692 | 19..231 | 100 | <- | Plus |
| X | 797762..797860 | 232..330 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:01 Download gff for
BO05453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 691513..691725 | 19..231 | 100 | <- | Plus |
| arm_X | 691795..691893 | 232..330 | 100 | | Plus |
BO05453.complete Sequence
2569 bp assembled on 2010-01-08
GenBank Submission: KX797943
> BO05453.complete
GAAGTTATCAGTCGACATGAGCGAGCCTGACCCGCAGGAACTGGGAGCTG
AGGTGGTCAGCGGATTGGTGGCGACCAGCGACGACCGCCTGGAGATGATC
AACGCCGAGTACACGAACCTATGCCGGGATCTAAACATGGATCGGCAGAC
AGAGCTGCAGGGCTACGAGACGTACTTAGAGGTGTCCCAGAGGTGCTCCA
TGGAGGGCACAGCCAGCCACTGGATGTGCTGCGCCATTTACACGGCCTGC
CGAAGAACCAGCACACCCACGGTGACTGGCCAGAATGCAGTGGTCAAGGG
TAATTGTGTGTCCTTAAACAATTTGCTGCGCTGCTGCAAGATGAGCATCT
ACGAGTTCAAGACCAAAATTAAGCAGTGGTGCGACATGGCCAACCTGCCT
CAGGAGTTTGTCAACGAGATTGAGGATCTGGACCGCAAGTTCAGCATTAC
ATTCATGCTGCACAAGCGTTTCCGCATTATTATGGACATGATCTTCTCGT
GCCCGCCCAACGAGAAGAAGCACTCCAAGTACATTTCTCTGCATGGCAAC
CACGCCCACGGAAAGTGCTCGTACATCAAGCTGGACGACATATGCTGGCG
CCTGTTTCTCTGCGCCAAGAACCAGAAGCCGAGCAACACCGTGGACCTGG
TGACATCCTACAATCTGATGATTTGCTGCATAGACCTGATATACAACAAT
GTGCTGGCCGAGAAGCGCACCGATCTCATCAACCCCAAATTCGAGGGCCT
GCCGAGCAACTGGACGGAGCTGGACTTTCGTCACAATCCGCACTGCATTT
TGTCCAACTTCTGTGACATGACCGAGGAGGCTAAAGCCATGAAGGCCACC
ACTTTCCGCCAGATCATGTCGAGCTTCTTTCAGGCTTCGACCATCTACGG
CAACAAGGACACTATGTTAGGCCTATTGGCTAACGAAAACTTCGAGCGCA
ACCTAAAGTCCCTCAACATCAGCTACGAGCAGTACGTCCTCAGCGTCGGC
GAATTCGACGAACGCATTCTGAGTGCCTACGATGCGGGGGAACACACTGC
CCTCAACGACCAGTCCCTGCGTCCGCCGGTTACTCCGCTTACCCGCAAGC
AAGATCTGCCTGCGCAGCCCGCGATGGCTGGCGATAAATTTGAGCCCGTC
CGCAACGCCACTAACAACGTGAAGCAGCTGAGCGCCTTCGGACGGATCAC
AGAACCCACGGACTTTGTCAAGCAAGCTGGCGAAGAGGTAATAGCCAAGC
TGCTTAGCATCATCGAGGAGATCGAGCAGAAATTCCTCGCCAAGTACCCG
TCAACGGAGGCGAAGAGTCGCTTCCAACTAGCGAAGTCCTTCTTCTTCTA
CCTGCTCGACCAGATCCTGCAGGCGGAAATTCGGAACAAGCCCGACATCG
ATCTCAAGCGACTGCTGGTGCAGAAGGTCTCCCTGGTCATCTTTAACATC
ACGCTGATGGCCTGCTGCGTGGAGCTGGTGCTGGAGGCCTACAAAACGGA
GCTCAAGTTCCCGTGGGTGCTCGACTGTTTCAGTATTAGCGCGTTCGAGT
TCCAAAAGATCATCGAGATCGTGGTGCGGCACGGCTCGCACGAAGGCTGT
TTGAACCGGTCGCTGATAAAGCACCTTAACTCCATCGAGGAGACGTGTCT
GGAGCGGCTGGCCTGGGCGAGGAACTCGACCGTCTGGGAAATGATCGCCT
CCGCCCAACTGCCGTTGCCCACGTGGCTCATGGTTAACCTCGACCGCGCC
GCCGGCCCCTTGCAGATATTCCTGCGCAAGGTGTACCTGCTTGGCTGGTT
GCGCATCCAGAAGCTGTGCTCGGAGCTGTCACTGTGCGAGAAGACGCCCG
AGAGCATCTGGCACATCTTTGAGCACTCGATCACCCACGAGACGGAATTG
ATGAAGGACCGCCACCTCGATCAAAATATTATGTGTGCAATATATATCTA
CATAAGAGTAAAGCGAATGGAGGACCCCAAGTTCAGTGACATTATGCGGG
CATATCGCAACCAGCCGCAGGCGGTGAACAGCGTCTACCGCGAGGTGTTC
ATCGACATCAACGAGGACGGGGAGCCAAAGGTGAAGGACATCATTCACTT
TTACAACCACACTTACGTGCCGCTGATGCGGCAGTTCGTCATCGACTACC
TAAACGTAACTCCGGACGTGAGTGGCCGGGCTTCGGATCTACAGCTCTCC
CCGCATCCGAAGGAACGGGCCGCCCAGCCCAAGAAGGTAACCCAGAGCCA
CTCGCTGTTCGTGTCGCAGATGTCCAAGAACGAGATACAGCAGTCGCCCA
ACCAGATGGTCTACAGTTTTTGCCGCAGCCCCGCCAAGGACCTTCAGGCT
ATGAACGAAAAGGTACGCGGCGGCAAGCGCATGCTGAGCTTTGGCGACGA
GCCCGGACTAGGTACAATGGCAGAGACGAAGCGCTCGAAAATCAGCCAGG
TCAAGGCCGTCATGGACGACCCTGAACTGCAGTCAGCCGAGCAGCAGACT
GCTGTTACCACGGAAGGTTGCGTAGGGGGCGAAGGAGGAGAACACGAGAC
AGCAAGCTTTCTAGACCAT
BO05453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-RA | 2538 | CG7413-PA | 1..2535 | 17..2551 | 12660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-RA | 3619 | CG7413-RA | 692..3229 | 14..2551 | 12675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 798276..799013 | 1959..1222 | 3690 | 100 | Minus |
| X | 23542271 | X | 797761..798142 | 2339..1958 | 1910 | 100 | Minus |
| X | 23542271 | X | 799711..800069 | 889..531 | 1765 | 99.4 | Minus |
| X | 23542271 | X | 799315..799648 | 1222..889 | 1670 | 100 | Minus |
| X | 23542271 | X | 797480..797694 | 2551..2337 | 1075 | 100 | Minus |
| X | 23542271 | X | 800596..800788 | 206..14 | 965 | 100 | Minus |
| X | 23542271 | X | 800128..800318 | 534..344 | 955 | 100 | Minus |
| X | 23542271 | X | 800378..800519 | 345..204 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:45:25 has no hits.
BO05453.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:25 Download gff for
BO05453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 673..3207 | 17..2553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:11 Download gff for
BO05453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 695..3229 | 17..2553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:16 Download gff for
BO05453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 695..3229 | 17..2553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:16 Download gff for
BO05453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 797478..797692 | 2339..2553 | 99 | <- | Minus |
| X | 797762..798142 | 1958..2338 | 100 | <- | Minus |
| X | 798278..799013 | 1222..1957 | 100 | <- | Minus |
| X | 799316..799647 | 890..1221 | 100 | <- | Minus |
| X | 799711..800065 | 535..889 | 99 | <- | Minus |
| X | 800128..800316 | 346..534 | 100 | <- | Minus |
| X | 800378..800517 | 206..345 | 100 | <- | Minus |
| X | 800597..800785 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:11 Download gff for
BO05453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 691511..691725 | 2339..2553 | 99 | <- | Minus |
| arm_X | 691795..692175 | 1958..2338 | 100 | <- | Minus |
| arm_X | 692311..693046 | 1222..1957 | 100 | <- | Minus |
| arm_X | 693349..693680 | 890..1221 | 100 | <- | Minus |
| arm_X | 693744..694098 | 535..889 | 99 | <- | Minus |
| arm_X | 694161..694349 | 346..534 | 100 | <- | Minus |
| arm_X | 694411..694550 | 206..345 | 100 | <- | Minus |
| arm_X | 694630..694818 | 17..205 | 100 | | Minus |
BO05453.pep Sequence
Translation from 16 to 2569
> BO05453.pep
MSEPDPQELGAEVVSGLVATSDDRLEMINAEYTNLCRDLNMDRQTELQGY
ETYLEVSQRCSMEGTASHWMCCAIYTACRRTSTPTVTGQNAVVKGNCVSL
NNLLRCCKMSIYEFKTKIKQWCDMANLPQEFVNEIEDLDRKFSITFMLHK
RFRIIMDMIFSCPPNEKKHSKYISLHGNHAHGKCSYIKLDDICWRLFLCA
KNQKPSNTVDLVTSYNLMICCIDLIYNNVLAEKRTDLINPKFEGLPSNWT
ELDFRHNPHCILSNFCDMTEEAKAMKATTFRQIMSSFFQASTIYGNKDTM
LGLLANENFERNLKSLNISYEQYVLSVGEFDERILSAYDAGEHTALNDQS
LRPPVTPLTRKQDLPAQPAMAGDKFEPVRNATNNVKQLSAFGRITEPTDF
VKQAGEEVIAKLLSIIEEIEQKFLAKYPSTEAKSRFQLAKSFFFYLLDQI
LQAEIRNKPDIDLKRLLVQKVSLVIFNITLMACCVELVLEAYKTELKFPW
VLDCFSISAFEFQKIIEIVVRHGSHEGCLNRSLIKHLNSIEETCLERLAW
ARNSTVWEMIASAQLPLPTWLMVNLDRAAGPLQIFLRKVYLLGWLRIQKL
CSELSLCEKTPESIWHIFEHSITHETELMKDRHLDQNIMCAIYIYIRVKR
MEDPKFSDIMRAYRNQPQAVNSVYREVFIDINEDGEPKVKDIIHFYNHTY
VPLMRQFVIDYLNVTPDVSGRASDLQLSPHPKERAAQPKKVTQSHSLFVS
QMSKNEIQQSPNQMVYSFCRSPAKDLQAMNEKVRGGKRMLSFGDEPGLGT
MAETKRSKISQVKAVMDDPELQSAEQQTAVTTEGCVGGEGGEHETASFLD
H
BO05453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-PA | 845 | CG7413-PA | 1..845 | 1..845 | 4440 | 100 | Plus |
| Rbf2-PA | 783 | CG5083-PA | 11..682 | 26..707 | 690 | 28.8 | Plus |
