Clone BO05454 Report

Search the DGRC for BO05454

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)k01209-RB
Protein status:BO05454.pep: validated full length
Sequenced Size:1912

Clone Sequence Records

BO05454.3prime Sequence

932 bp (841 high quality bases) assembled on 2005-12-02

> BO05454.3prime
ATGGTCTAGAAAGCTTGCGTACTCATCAGAGGGTTCCGTGCCAAAGTAGC
GATCGCCAAAGTTACCAATGCCGGGTATAACATAAAACTTACTATTAATC
TCCGGATCCAGAGCGGAAGTAACAATTTTCACCTTTGGGAAGGCATAGGC
AATGGAGTGCACACCGATCTCAGCCATCAAAAGCGAGGCCAAGATAATGT
TGTCCTCGGGTACATCGTGATCCAGCAGCACCCGAATGGCCATCATGGCC
GCTGCTCCTGTGGCCACGGTGGCATCCATTAGTATCACCTTGTAGTCTTT
TATGTCTTTAGGCAGCCTCAGGTAGTAAAGCTCCGGCTCGCCGGTCTTAA
GATTGGTCTGGATGAGGATCTTTCCGATGCGAATGTCCTTGCACACATCA
CAAACGGCTTGTTCCATTGTTTCACCAGCTCGGAGAATTGAGACGCCGCA
TATTTTTCGCGATTCCATACGCTTGCCCTCGTAAAGGACACCTTGTGGAG
TCTCCACTGTTGTTTTCTTAAAGGGAAATAAGCTTAGCGCATATTCAATG
ACTAGCCGTATCAGGCGCTTTGAGTAAAAAATAAACTCATCGCGGGACGT
ATTTCGGCAACGGATGAACGTGTGCAGGCCCTTTATTTGGGGCGTGGGAT
GCAGCAAGTGCAGAGAATGTGGCATTGGCTGGTCCTTGTAGGAGTTGGCC
AGAGTTTCGCGCAGCTTAAATCCGCGCAGTTGCAGCTGTGTGTGCACGTG
CTGAACAATGAGATGGATGGCCACCTTGTTGTCGCCTCCACGAGGAACAA
TGATATCTGCATGGGCCATTGTTGGAGCTATGTAATTGCAATAGGAGGGC
TTAACCATATTAAGGTATTGCTTCAGCACGCCCTTGAGGTCTCGTCCGCG
CTGAGAGATGTCCCTTCTTAACCGCCTGGCCA

BO05454.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4798-PA 1686 l(2)k01209-RA 770..1683 932..19 4570 100 Minus
CG4798-PB 1881 l(2)k01209-RB 965..1878 932..19 4570 100 Minus
CG4798-PC 1881 l(2)k01209-RC 965..1878 932..19 4570 100 Minus
CG4798-PD 1881 l(2)k01209-RD 965..1878 932..19 4570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-RD 2284 CG4798-RD 1275..2188 932..19 4570 100 Minus
l(2)k01209-RC 2380 CG4798-RC 1371..2284 932..19 4570 100 Minus
l(2)k01209-RB 3254 CG4798-RB 2245..3158 932..19 4570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17424818..17425416 727..129 2995 100 Minus
2R 25286936 2R 17424571..17424759 915..727 945 100 Minus
2R 25286936 2R 17425468..17425583 134..19 580 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:19:22 has no hits.

BO05454.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:31 Download gff for BO05454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4798-PD 966..1881 15..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:28 Download gff for BO05454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4798-PD 966..1881 15..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:05 Download gff for BO05454.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 2246..3162 14..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:47 Download gff for BO05454.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 2246..3162 14..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:47 Download gff for BO05454.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17425470..17425587 14..132 98   Minus
2R 17424488..17424505 914..931 100 -> Minus
2R 17424573..17424759 727..913 100 -> Minus
2R 17424819..17425412 133..726 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:05 Download gff for BO05454.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13311993..13312010 914..931 100 -> Minus
arm_2R 13312078..13312264 727..913 100 -> Minus
arm_2R 13312324..13312917 133..726 100 -> Minus
arm_2R 13312975..13313092 14..132 98   Minus

BO05454.5prime Sequence

918 bp (795 high quality bases) assembled on 2005-12-02

> BO05454.5prime
GAAGTTATCAGTCGACATGAGCAGCATCACGTTTTTGTGCAGCAAGTCGG
GCCACAACACCAACAACAACAGCATTAATAGTAGCAATAACGATGTTCCA
AAAGGGGCAAAAGCGAACTCAGCATTTGCAGCCGCATCCGCCGGTTTACT
AACCATCGCAAACCACCAGCAGCAACAGCTACTTCAGCAACCACATCAAC
AGCAGCAGCAACAACAACAACAGCATCATCAGCAGTCAAAGGTTAAGGCT
ATAGCAGCCAAAACCAATGGTCACATCGATGACCGTTCACTCTCGGATGT
CACAGAGCAACTCTATGTGGATCCGTATGCCGACCTAAGCAATGGCTTGC
CCGGGGATCTCAACTGCTGTCCGGCCTCGCCCACCACAGTGCCTGCTAAA
GCATCGTTGGATTCGCCTCTTAAACGTTCCGGTAGGAGACAGCGAACCAC
ATCCATTGGCAACCAGACCACCACAGCGAATCCGTCCGAATGCATCATAC
GCGCAAATAACCGCACGATCTACACGGCCGGACGACCGCCGTGGTACAAT
TGTGCTGGGCAACAGGTGGAGCCCTTCGTCATAGGAATCTGCGGCGGTAG
TGCCTCTGGCAAGACCACAGTGGCTGAGAAAATCATCGAAAGCCTAGACG
TTCCATGGGTAACACTGTTGTCCATGGACTGTTTCTACAAGATCCTTAAT
GAGAAACAGCATGAGCAGGCCCTGATCAACGAATATAACTTCGATCACCC
GGATGCCTTCGACATCGAGCTGCTGCTGGACGTGCTCACCAAGCTGAAGG
AGGGCCGAAAGGTGGAAGTTCCTGTCTATAATTTTGTGACACATGGTCGT
GAGAGCCAAACGAAAACCATGTACGGGGCCAATGTGATCATCTTCGAGGG
TATTCTTACCTTTCATAG

BO05454.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4798-PB 1881 l(2)k01209-RB 1..902 17..918 4510 100 Plus
CG4798-PC 1881 l(2)k01209-RC 1..902 17..918 4510 100 Plus
CG4798-PD 1881 l(2)k01209-RD 1..902 17..918 4510 100 Plus
CG4798-PA 1686 l(2)k01209-RA 66..707 277..918 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-RD 2284 CG4798-RD 311..1212 17..918 4510 100 Plus
l(2)k01209-RC 2380 CG4798-RC 407..1308 17..918 4510 100 Plus
l(2)k01209-RB 3254 CG4798-RB 1281..2182 17..918 4510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17423656..17423964 277..585 1545 100 Plus
2R 25286936 2R 17421687..17421946 17..276 1300 100 Plus
2R 25286936 2R 17424196..17424424 690..918 1145 100 Plus
2R 25286936 2R 17424026..17424134 583..691 545 100 Plus
Blast to na_te.dros performed 2015-02-13 01:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2491 20..234 337 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6948 39..240 279 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2583 13..251 244 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..7055 13..227 162 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1588 58..133 124 68.4 Plus
roo 9092 roo DM_ROO 9092bp 1096..1150 39..93 122 69.1 Plus
BS 5142 BS BS 5142bp 1977..2071 20..116 120 59.8 Plus

BO05454.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:32 Download gff for BO05454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4798-PD 1..902 17..918 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:29 Download gff for BO05454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4798-PD 1..902 17..918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:10:17 Download gff for BO05454.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..2182 17..918 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:34 Download gff for BO05454.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..2182 17..918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:34 Download gff for BO05454.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17421687..17421946 17..276 100 -> Plus
2R 17423656..17423963 277..584 100 -> Plus
2R 17424028..17424134 585..691 100 -> Plus
2R 17424198..17424424 692..918 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:10:17 Download gff for BO05454.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13309192..13309451 17..276 100 -> Plus
arm_2R 13311161..13311468 277..584 100 -> Plus
arm_2R 13311533..13311639 585..691 100 -> Plus
arm_2R 13311703..13311929 692..918 100   Plus

BO05454.complete Sequence

1912 bp (1912 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ630045

> BO05454.complete
GAAGTTATCAGTCGACATGAGCAGCATCACGTTTTTGTGCAGCAAGTCGG
GCCACAACACCAACAACAACAGCATTAATAGTAGCAATAACGATGTTCCA
AAAGGGGCAAAAGCGAACTCAGCATTTGCAGCCGCATCCGCCGGTTTACT
AACCATCGCAAACCACCAGCAGCAACAGCTACTTCAGCAACCACATCAAC
AGCAGCAGCAACAACAACAACAGCATCATCAGCAGTCAAAGGTTAAGGCT
ATAGCAGCCAAAACCAATGGTCACATCGATGACCGTTCACTCTCGGATGT
CACAGAGCAACTCTATGTGGATCCGTATGCCGACCTAAGCAATGGCTTGC
CCGGGGATCTCAACTGCTGTCCGGCCTCGCCCACCACAGTGCCTGCTAAA
GCATCGTTGGATTCGCCTCTTAAACGTTCCGGTAGGAGACAGCGAACCAC
ATCCATTGGCAACCAGACCACCACAGCGAATCCGTCCGAATGCATCATAC
GCGCAAATAACCGCACGATCTACACGGCCGGACGACCGCCGTGGTACAAT
TGTGCTGGGCAACAGGTGGAGCCCTTCGTCATAGGAATCTGCGGCGGTAG
TGCCTCTGGCAAGACCACAGTGGCTGAGAAAATCATCGAAAGCCTAGACG
TTCCATGGGTAACACTGTTGTCCATGGACTGTTTCTACAAGATCCTTAAT
GAGAAACAGCATGAGCAGGCCCTGATCAACGAATATAACTTCGATCACCC
GGATGCCTTCGACATCGAGCTGCTGCTGGACGTGCTCACCAAGCTGAAGG
AGGGCCGAAAGGTGGAAGTTCCTGTCTATAATTTTGTGACACATGGTCGT
GAGAGCCAAACGAAAACCATGTACGGGGCCAATGTGATCATCTTCGAGGG
TATTCTTACCTTTCATAGTCCTGAAGTACTTAAATTGCTAGACATGAAGA
TATTTGTGGACACAGATCCCGATATTCGTCTGGCCAGGCGGTTAAGAAGG
GACATCTCTCAGCGCGGACGAGACCTCAAGGGCGTGCTGAAGCAATACCT
TAATATGGTTAAGCCCTCCTATTGCAATTACATAGCTCCAACAATGGCCC
ATGCAGATATCATTGTTCCTCGTGGAGGCGACAACAAGGTGGCCATCCAT
CTCATTGTTCAGCACGTGCACACACAGCTGCAACTGCGCGGATTTAAGCT
GCGCGAAACTCTGGCCAACTCCTACAAGGACCAGCCAATGCCACATTCTC
TGCACTTGCTGCATCCCACGCCCCAAATAAAGGGCCTGCACACGTTCATC
CGTTGCCGAAATACGTCCCGCGATGAGTTTATTTTTTACTCAAAGCGCCT
GATACGGCTAGTCATTGAATATGCGCTAAGCTTATTTCCCTTTAAGAAAA
CAACAGTGGAGACTCCACAAGGTGTCCTTTACGAGGGCAAGCGTATGGAA
TCGCGAAAAATATGCGGCGTCTCAATTCTCCGAGCTGGTGAAACAATGGA
ACAAGCCGTTTGTGATGTGTGCAAGGACATTCGCATCGGAAAGATCCTCA
TCCAGACCAATCTTAAGACCGGCGAGCCGGAGCTTTACTACCTGAGGCTG
CCTAAAGACATAAAAGACTACAAGGTGATACTAATGGATGCCACCGTGGC
CACAGGAGCAGCGGCCATGATGGCCATTCGGGTGCTGCTGGATCACGATG
TACCCGAGGACAACATTATCTTGGCCTCGCTTTTGATGGCTGAGATCGGT
GTGCACTCCATTGCCTATGCCTTCCCAAAGGTGAAAATTGTTACTTCCGC
TCTGGATCCGGAGATTAATAGTAAGTTTTATGTTATACCCGGCATTGGTA
ACTTTGGCGATCGCTACTTTGGCACGGAACCCTCTGATGAGTACGCAAGC
TTTCTAGACCAT

BO05454.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-RD 1881 CG4798-PD 1..1878 17..1894 9390 100 Plus
l(2)k01209-RC 1881 CG4798-PC 1..1878 17..1894 9390 100 Plus
l(2)k01209-RB 1881 CG4798-PB 1..1878 17..1894 9390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-RD 2284 CG4798-RD 311..2188 17..1894 9390 100 Plus
l(2)k01209-RC 2380 CG4798-RC 407..2284 17..1894 9390 100 Plus
l(2)k01209-RB 3254 CG4798-RB 1281..3158 17..1894 9390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17424818..17425416 1186..1784 2995 100 Plus
2R 25286936 2R 17424196..17424506 690..1000 1555 100 Plus
2R 25286936 2R 17423656..17423964 277..585 1545 100 Plus
2R 25286936 2R 17421687..17421946 17..276 1300 100 Plus
2R 25286936 2R 17424571..17424759 998..1186 945 100 Plus
2R 25286936 2R 17425468..17425583 1779..1894 580 100 Plus
2R 25286936 2R 17424026..17424134 583..691 545 100 Plus
Blast to na_te.dros performed 2014-11-28 01:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2491 20..234 337 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6948 39..240 279 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2583 13..251 244 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..7055 13..227 162 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1588 58..133 124 68.4 Plus
roo 9092 roo DM_ROO 9092bp 1096..1150 39..93 122 69.1 Plus
BS 5142 BS BS 5142bp 1977..2071 20..116 120 59.8 Plus

BO05454.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:30 Download gff for BO05454.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RD 1..1881 17..1898 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:53 Download gff for BO05454.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RD 652..2533 17..1899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:08 Download gff for BO05454.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..3158 17..1896 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:30 Download gff for BO05454.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RD 652..2533 17..1899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:52 Download gff for BO05454.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..3158 17..1896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:52 Download gff for BO05454.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17421687..17421946 17..276 100 -> Plus
2R 17423656..17423963 277..584 100 -> Plus
2R 17424028..17424134 585..691 100 -> Plus
2R 17424198..17424505 692..999 100 -> Plus
2R 17424573..17424759 1000..1186 100 -> Plus
2R 17424819..17425412 1187..1780 100 -> Plus
2R 17425470..17425583 1781..1896 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:08 Download gff for BO05454.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13309192..13309451 17..276 100 -> Plus
arm_2R 13311161..13311468 277..584 100 -> Plus
arm_2R 13311533..13311639 585..691 100 -> Plus
arm_2R 13311703..13312010 692..999 100 -> Plus
arm_2R 13312078..13312264 1000..1186 100 -> Plus
arm_2R 13312324..13312917 1187..1780 100 -> Plus
arm_2R 13312975..13313088 1781..1896 98   Plus

BO05454.pep Sequence

Translation from 16 to 1912

> BO05454.pep
MSSITFLCSKSGHNTNNNSINSSNNDVPKGAKANSAFAAASAGLLTIANH
QQQQLLQQPHQQQQQQQQQHHQQSKVKAIAAKTNGHIDDRSLSDVTEQLY
VDPYADLSNGLPGDLNCCPASPTTVPAKASLDSPLKRSGRRQRTTSIGNQ
TTTANPSECIIRANNRTIYTAGRPPWYNCAGQQVEPFVIGICGGSASGKT
TVAEKIIESLDVPWVTLLSMDCFYKILNEKQHEQALINEYNFDHPDAFDI
ELLLDVLTKLKEGRKVEVPVYNFVTHGRESQTKTMYGANVIIFEGILTFH
SPEVLKLLDMKIFVDTDPDIRLARRLRRDISQRGRDLKGVLKQYLNMVKP
SYCNYIAPTMAHADIIVPRGGDNKVAIHLIVQHVHTQLQLRGFKLRETLA
NSYKDQPMPHSLHLLHPTPQIKGLHTFIRCRNTSRDEFIFYSKRLIRLVI
EYALSLFPFKKTTVETPQGVLYEGKRMESRKICGVSILRAGETMEQAVCD
VCKDIRIGKILIQTNLKTGEPELYYLRLPKDIKDYKVILMDATVATGAAA
MMAIRVLLDHDVPEDNIILASLLMAEIGVHSIAYAFPKVKIVTSALDPEI
NSKFYVIPGIGNFGDRYFGTEPSDEYASFLDH

BO05454.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-PD 626 CG4798-PD 1..626 1..626 3254 100 Plus
l(2)k01209-PC 626 CG4798-PC 1..626 1..626 3254 100 Plus
l(2)k01209-PB 626 CG4798-PB 1..626 1..626 3254 100 Plus
l(2)k01209-PA 561 CG4798-PA 7..561 72..626 2810 97.5 Plus
CG6364-PB 305 CG6364-PB 27..240 186..391 492 46.7 Plus