Clone BO05457 Report

Search the DGRC for BO05457

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptClC-c-RB
Protein status:BO05457.pep: Imported from assembly
Sequenced Size:2500

Clone Sequence Records

BO05457.3prime Sequence

912 bp (838 high quality bases) assembled on 2005-12-02

> BO05457.3prime
ATGGTCTAGAAAGCTTGCGTTGAAGAGCACCGTATTGGGATCTTCGTTAT
CCATCTGCTTCACATGGCGCAGCACATCTTTCTTTGTAATTACGCCCAGT
AGGCGACCGTTGTGTGTTACCAATGTTTGGCGCAGTCCCAGCTTTCGGAA
CATGTCCACTACCGTCTCCATTGGCGTTTGATCTGTAACTGTGATCGGTG
CCATATCCAGGATCTTTTTCAGCTTCAGCGGCTGGGGTCCCAGATTTTGA
ATAGGCTGGGATGATGTGAATAATACTATGGAGCTGCTGCTAATGCCCTC
GATTAGACGCTTGGCATTGCCTATGGCCAAGTTAAGATCCCTGCGCAATA
CAAAGCCCACTAAATATTGATTCTCCCGCGACACCACCACCGGATAGCCA
TTGTGTTCCGTTTCTTTAAGAAGGTTCTCAACATCGTCCACCGTCATGGA
GTCTTGGGTAATGACATTCAAAGTTTCATTCCGCTTTGGTTGCATCACAT
CTGCGGCCAGTGTTGTATGCGCAAACTCTTCTTTGCTGTCTAGGAACGGA
TAACCATTCAGCGCAATGTGCGCATCGTAGATACCTTGCCTGCCCAGAGC
ATCACCCACCCACTTGGAGGCCATGGCGGCAGCCATCAGGGGCACAATAT
ACCGCACTCCGCCTGTTAGCTCGAACATTATCACTACCAGGGAGACGGTC
ATTCGAGTGACACCTCCCAGCACAGCTGCTGCTCCCACAACCGCATACAG
TCCGGGTGTGATAAGATTGCTGTCCGCACACTCACCGGTAAAGAACCAAA
TATTGGGATAGCTGTAGGCAAACTGCTCCACACCGATTCCACAATGCGAC
CCATGATGGCGCCAAGGAGCAGGGACGGAATAAACAGACCAGCGGGCACT
TTCATGCCAAAC

BO05457.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5284-PB 2469 CG5284-RB 1644..2466 841..19 4115 100 Minus
CG5284-PA 2580 CG5284-RA 1912..2577 684..19 3330 100 Minus
CG5284-PB 2469 CG5284-RB 1572..1643 912..841 360 100 Minus
CG5284-PA 2580 CG5284-RA 1785..1856 912..841 360 100 Minus
CG5284-PA 2580 CG5284-RA 1857..1912 841..786 280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-RD 3962 CG5284-RD 2163..3057 912..19 4450 99.9 Minus
ClC-c-RC 3718 CG5284-RC 2163..3057 912..19 4450 99.9 Minus
ClC-c-RB 3319 CG5284-RB 1764..2658 912..19 4450 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16094120..16094549 912..484 2100 99.8 Minus
3L 28110227 3L 16094825..16095042 324..107 1090 100 Minus
3L 28110227 3L 16094607..16094771 484..320 825 100 Minus
3L 28110227 3L 16095105..16095193 107..19 445 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:06:41 has no hits.

BO05457.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:38 Download gff for BO05457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5284-PB 1572..2469 16..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:36 Download gff for BO05457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5284-PB 1572..2469 16..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:39 Download gff for BO05457.3prime
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 1764..2665 10..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:07 Download gff for BO05457.3prime
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 1764..2665 10..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:07 Download gff for BO05457.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16094120..16094548 485..912 99 -> Minus
3L 16094607..16094770 321..484 100 -> Minus
3L 16094829..16095042 107..320 100 -> Minus
3L 16095106..16095200 10..106 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:39 Download gff for BO05457.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16087220..16087648 485..912 99 -> Minus
arm_3L 16087707..16087870 321..484 100 -> Minus
arm_3L 16087929..16088142 107..320 100 -> Minus
arm_3L 16088206..16088300 10..106 95   Minus

BO05457.5prime Sequence

828 bp (763 high quality bases) assembled on 2005-12-02

> BO05457.5prime
GAAGTTATCAGTCGACATGATTGACATCACACCCCGCTCCAGTCCAGGCG
ATGTGATCGGCGGCGGCGGAGGAGGAGGAAGCAGCAGTGGCTATCACCGG
GAAACGGCCACCGAATCGGACACCGAACGAGATTTCGGACACTCTGGCGG
CAACGGCGGCGGCAATCACCACAATCAGCGGACAATGCACCAGCATGTGC
CAACTCACAGTGCCTTCGGCGATCCTATGGACGGAGCACTATCCTTCTAT
GGTTCCTCGGACGTGCAAGATGATATTCCTGGCATTGGGCAGTACGAAGA
TTTTCACACCATTGATTGGCAGCGGGACATTGCCCGTGATCGGATGCGAC
ATCGCTACATAGTCAAGAAGCGACAGGACTCCTTGTGGGATCTGATAAAG
GGTTCCATTGATGCCGGATCTGGCTGGCTATGTGTTTTACTCGTCGGAAT
TGCCGCAGGCTGTGTGGCGGGCATGGTGGACATTGGAGCTAGTTGGATGT
CGGATCTAAAGCATGGCATTTGTCCACCCGCCTTTTGGTTTAACAGGGAA
CAATGCTGCTATCCGGCCAAACAGTCAGTATTTGAAGAAGGCAACTGCTC
GACGTGGAAAACCTGGCCAGAGATCTTTGGTTTGGATCGAAATGGCACCG
GACCATATATCGTCGCTTACATCTGGTATGTGCTGTGGGCTTTGCTTTTT
GCTTCGCTCAGCGCCTCCCTTGTGCGAATGTTTGCGCCCTACGCCTGCGG
ATCTGGTATTCCCGAGATAAAGACCATCTTGTCTGGCTTCATTATACGCG
GCTATCTAGGAAAGTGGACGCTGCTGAT

BO05457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5284-PA 2580 CG5284-RA 214..1025 17..828 4060 100 Plus
CG5284-PB 2469 CG5284-RB 1..812 17..828 4060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-RD 3962 CG5284-RD 592..1403 17..828 4060 100 Plus
ClC-c-RC 3718 CG5284-RC 592..1403 17..828 4060 100 Plus
ClC-c-RB 3319 CG5284-RB 193..1004 17..828 4060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16093015..16093239 604..828 1125 100 Plus
3L 28110227 3L 16091642..16091859 17..234 1090 100 Plus
3L 28110227 3L 16092751..16092959 396..604 1045 100 Plus
3L 28110227 3L 16092531..16092699 233..401 845 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:07:42 has no hits.

BO05457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:38 Download gff for BO05457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5284-PB 1..812 17..828 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:38 Download gff for BO05457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5284-PB 1..812 17..828 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:41 Download gff for BO05457.5prime
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 188..1004 10..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:21 Download gff for BO05457.5prime
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 188..1004 10..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:21 Download gff for BO05457.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16093016..16093239 605..828 100   Plus
3L 16091637..16091858 10..233 98 -> Plus
3L 16092532..16092698 234..400 100 -> Plus
3L 16092756..16092959 401..604 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:41 Download gff for BO05457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16084737..16084958 10..233 98 -> Plus
arm_3L 16085632..16085798 234..400 100 -> Plus
arm_3L 16085856..16086059 401..604 100 -> Plus
arm_3L 16086116..16086339 605..828 100   Plus

BO05457.complete Sequence

2500 bp assembled on 2008-08-14

GenBank Submission: KX796082

> BO05457.complete
GAAGTTATCAGTCGACATGATTGACATCACACCCCGCTCCAGTCCAGGCG
ATGTGATCGGCGGCGGCGGAGGAGGAGGAAGCAGCAGTGGCTATCACCGG
GAAACGGCCACCGAATCGGACACCGAACGAGATTTCGGACACTCTGGCGG
CAACGGCGGCGGCAATCACCACAATCAGCGGACAATGCACCAGCATGTGC
CAACTCACAGTGCCTTCGGCGATCCTATGGACGGAGCACTATCCTTCTAT
GGTTCCTCGGACGTGCAAGATGATATTCCTGGCATTGGGCAGTACGAAGA
TTTTCACACCATTGATTGGCAGCGGGACATTGCCCGTGATCGGATGCGAC
ATCGCTACATAGTCAAGAAGCGACAGGACTCCTTGTGGGATCTGATAAAG
GGTTCCATTGATGCCGGATCTGGCTGGCTATGTGTTTTACTCGTCGGAAT
TGCCGCAGGCTGTGTGGCGGGCATGGTGGACATTGGAGCTAGTTGGATGT
CGGATCTAAAGCATGGCATTTGTCCACCCGCCTTTTGGTTTAACAGGGAA
CAATGCTGCTATCCGGCCAAACAGTCAGTATTTGAAGAAGGCAACTGCTC
GACGTGGAAAACCTGGCCAGAGATCTTTGGTTTGGATCGAAATGGCACCG
GACCATATATCGTCGCTTACATCTGGTATGTGCTGTGGGCTTTGCTTTTT
GCTTCGCTCAGCGCCTCCCTTGTGCGAATGTTTGCGCCCTACGCCTGCGG
ATCTGGTATTCCCGAGATAAAGACCATCTTGTCTGGCTTCATTATACGCG
GCTATCTAGGAAAGTGGACGCTGCTGATCAAATCGGTGGGTCTGATGCTG
TCTGTATCCGCTGGCCTCACTTTGGGCAAGGAAGGACCCATGGTCCACAT
TGCCAGTTGTATTGGAAACATATTCTCACATGTTTTCCCAAAATATGGTC
GAAATGAGGCCAAGAAGCGTGAGATTCTTTCGGCAGCAGCAGCGGCAGGC
GTCTCGGTGGCCTTCGGAGCACCAATCGGTGGAGTTCTCTTTTCGCTGGA
GGAAGTGTCATACTATTTTCCATTGAAGACATTGTGGCGTTCATTCTTTT
GTGCATTGATTGCCGCATTCGTTTTACGATCACTGACGCCGTTTGGCAAC
GAGCATTCCGTGCTCTTTTTCGTGGAGTATAACAAGCCCTGGATCTTTTT
CGAACTTATTCCTTTTGTTTTCCTCGGAATTATGGGGGGTGTTATTGGCA
CATTCTTCATCAAGGCCAATTTGTGGTGGTGCCGCTACAGGAAGTTCAGC
AAGCTCGGACAGTATCCAGTAATGGAAGTGCTCTTCGTTACCCTGGTCAC
TGCCATCATTTGCTACCCCAATCCATTTACCCGAATGAACATGAACGAGC
TAATATTCCTATTGGTTAGCAAGTGCTCACCCGGAGATGTCACCAATCCG
TTATGTGATTACAAGCGCATGAACATCACGTCGGGCAACAGTTTCATTGA
AGTTACGGAGCCAGGTCCTGGTGTGTACAGCTCCATTTGGCTGCTTATGC
TCACCTTTATACTTAAACTGGCCCTGACCATCTTCACGTTTGGCATGAAA
GTGCCCGCTGGTCTGTTTATTCCGTCCCTGCTCCTTGGCGCCATCATGGG
TCGCATTGTTGGAATCGGTGTGGAGCAGTTTGCCTACAGCTATCCCAATA
TTTGGTTCTTTACCGGTGAGTGTGCGGACAGCAATCTTATCACACCCGGA
CTGTATGCGGTTGTGGGAGCAGCAGCTGTGCTGGGAGGTGTCACTCGAAT
GACCGTCTCCCTGGTAGTGATAATGTTCGAGCTAACAGGCGGAGTGCGGT
ATATTGTGCCCCTGATGGCTGCCGCCATGGCCTCCAAGTGGGTGGGTGAT
GCTCTGGGCAGGCAAGGTATCTACGATGCGCACATTGCGCTGAATGGTTA
TCCGTTCCTAGACAGCAAAGAAGAGTTTGCGCATACAACACTGGCCGCAG
ATGTGATGCAACCAAAGCGGAATGAAACTTTGAATGTCATTACCCAAGAC
TCCATGACGGTGGACGATGTTGAGAACCTTCTTAAAGAAACGGAACACAA
TGGCTATCCGGTGGTGGTGTCGCGGGAGAATCAATATTTAGTGGGCTTTG
TATTGCGCAGGGATCTTAACTTGGCCATAGGCAATGCCAAGCGTCTAATC
GAGGGCATTAGCAGCAGCTCCATAGTATTATTCACATCATCCCAGCCTAT
TCAAAATCTGGGACCCCAGCCGCTGAAGCTGAAAAAGATCCTGGATATGG
CACCGATCACAGTTACAGATCAAACGCCAATGGAGACGGTAGTGGACATG
TTCCGAAAGCTGGGACTGCGCCAAACATTGGTAACACACAACGGTCGCCT
ACTGGGCGTAATTACAAAGAAAGATGTGCTGCGCCATGTGAAGCAGATGG
ATAACGAAGATCCCAATACGGTGCTCTTCAACGCAAGCTTTCTAGACCAT

BO05457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-RD 2682 CG5284-PD 214..2679 17..2482 12330 100 Plus
ClC-c-RC 2682 CG5284-PC 214..2679 17..2482 12330 100 Plus
ClC-c-RB 2469 CG5284-PB 1..2466 17..2482 12330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-RD 3962 CG5284-RD 592..3057 17..2482 12330 100 Plus
ClC-c-RC 3718 CG5284-RC 592..3057 17..2482 12330 100 Plus
ClC-c-RB 3319 CG5284-RB 193..2658 17..2482 12330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16093015..16093649 604..1238 3175 100 Plus
3L 28110227 3L 16093987..16094549 1455..2017 2815 100 Plus
3L 28110227 3L 16093704..16093922 1237..1455 1095 100 Plus
3L 28110227 3L 16094825..16095042 2177..2394 1090 100 Plus
3L 28110227 3L 16091642..16091859 17..234 1090 100 Plus
3L 28110227 3L 16092751..16092959 396..604 1045 100 Plus
3L 28110227 3L 16092531..16092699 233..401 845 100 Plus
3L 28110227 3L 16094607..16094771 2017..2181 825 100 Plus
3L 28110227 3L 16095105..16095193 2394..2482 445 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:54:56 has no hits.

BO05457.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:51 Download gff for BO05457.complete
Subject Subject Range Query Range Percent Splice Strand
CG5284-RB 188..2665 10..2491 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:46 Download gff for BO05457.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 193..2658 17..2484 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:37 Download gff for BO05457.complete
Subject Subject Range Query Range Percent Splice Strand
CG5284-RB 193..2658 17..2484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:54 Download gff for BO05457.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 193..2658 17..2484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:54 Download gff for BO05457.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16091642..16091858 17..233 100 -> Plus
3L 16092532..16092698 234..400 100 -> Plus
3L 16092756..16092959 401..604 100 -> Plus
3L 16093016..16093648 605..1237 100 -> Plus
3L 16093705..16093922 1238..1455 100 -> Plus
3L 16093988..16094548 1456..2016 100 -> Plus
3L 16094607..16094770 2017..2180 100 -> Plus
3L 16094829..16095042 2181..2394 100 -> Plus
3L 16095106..16095193 2395..2484 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:46 Download gff for BO05457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16084742..16084958 17..233 100 -> Plus
arm_3L 16085632..16085798 234..400 100 -> Plus
arm_3L 16085856..16086059 401..604 100 -> Plus
arm_3L 16086116..16086748 605..1237 100 -> Plus
arm_3L 16086805..16087022 1238..1455 100 -> Plus
arm_3L 16087088..16087648 1456..2016 100 -> Plus
arm_3L 16087707..16087870 2017..2180 100 -> Plus
arm_3L 16087929..16088142 2181..2394 100 -> Plus
arm_3L 16088206..16088293 2395..2484 97   Plus

BO05457.pep Sequence

Translation from 16 to 2500

> BO05457.pep
MIDITPRSSPGDVIGGGGGGGSSSGYHRETATESDTERDFGHSGGNGGGN
HHNQRTMHQHVPTHSAFGDPMDGALSFYGSSDVQDDIPGIGQYEDFHTID
WQRDIARDRMRHRYIVKKRQDSLWDLIKGSIDAGSGWLCVLLVGIAAGCV
AGMVDIGASWMSDLKHGICPPAFWFNREQCCYPAKQSVFEEGNCSTWKTW
PEIFGLDRNGTGPYIVAYIWYVLWALLFASLSASLVRMFAPYACGSGIPE
IKTILSGFIIRGYLGKWTLLIKSVGLMLSVSAGLTLGKEGPMVHIASCIG
NIFSHVFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYY
FPLKTLWRSFFCALIAAFVLRSLTPFGNEHSVLFFVEYNKPWIFFELIPF
VFLGIMGGVIGTFFIKANLWWCRYRKFSKLGQYPVMEVLFVTLVTAIICY
PNPFTRMNMNELIFLLVSKCSPGDVTNPLCDYKRMNITSGNSFIEVTEPG
PGVYSSIWLLMLTFILKLALTIFTFGMKVPAGLFIPSLLLGAIMGRIVGI
GVEQFAYSYPNIWFFTGECADSNLITPGLYAVVGAAAVLGGVTRMTVSLV
VIMFELTGGVRYIVPLMAAAMASKWVGDALGRQGIYDAHIALNGYPFLDS
KEEFAHTTLAADVMQPKRNETLNVITQDSMTVDDVENLLKETEHNGYPVV
VSRENQYLVGFVLRRDLNLAIGNAKRLIEGISSSSIVLFTSSQPIQNLGP
QPLKLKKILDMAPITVTDQTPMETVVDMFRKLGLRQTLVTHNGRLLGVIT
KKDVLRHVKQMDNEDPNTVLFNASFLDH

BO05457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-PD 893 CG5284-PD 72..893 1..822 4339 100 Plus
ClC-c-PC 893 CG5284-PC 72..893 1..822 4339 100 Plus
ClC-c-PB 822 CG5284-PB 1..822 1..822 4339 100 Plus
ClC-b-PA 813 CG8594-PA 128..811 103..805 601 27.8 Plus
ClC-a-PG 1018 CG31116-PG 28..678 42..727 534 28.1 Plus