Clone BO05462 Report

Search the DGRC for BO05462

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)NC136-RA
Protein status:BO05462.pep: Imported from assembly
Sequenced Size:2566

Clone Sequence Records

BO05462.3prime Sequence

936 bp (837 high quality bases) assembled on 2005-12-02

> BO05462.3prime
ATGGTCTAGAAAGCTTGCATTCAGCTCCTTGTCCTCTAAGTACTTGTATT
CAAAGGTGAATCCCTCCTTCTTTCGCTGACTCCACTTTTCATAATCAAAA
TAGATGTACGTACCCTGTTCGTAATCATCGTTGATAATCTTCGGCTCCTC
GTGCCTTTGAAACCACATCATATACTTTGTGTGGAAACGCCAGCTCTGCT
TTTTTAAGGCCTTGGCCGCTAGATACTGGGCCTTGGAGCCCTCCATATAG
TAGAACACAAAAAAAAGGGTCTCCGTTGAGAGTCGTTGATAAAACTCAAC
TGTATCATATATTGGCATCTGTGCCTGGGGATAGTGCGATGGCGTGAGCA
CTGGTGCGCGATGAAAGTACGTTTGTAGCTTTTCCGTGTCCATAGGCTGT
GGCAGGTGATAGTAGGCAGCTTCCATCATTTGGAACTGCATTTGGTGCTC
CTTTTGAAGTGGTGTTGGCCCAAGTGGTGTCACACCAAGCAGTGTGGGAA
TGTGCGCTTCCGTCGTGGCCATCTGTTGGGGTTGGCACGCATGCGTTTTG
GCATTGCCGCTGATAGGCTGACCAGTAGCGTTTGCTACATTCATGAGACC
ACTACCAGTTGAAGTTCCGTTGTTAGAACCTGTGGTCGCAGCAAGGGAGT
TATTCTGAAGCTGTTGCTGCTGCTGCGATGTCAATTGCTGTTGATTCGTG
TTGGTTTCAGAGTTGAAATGTTGGAGAAGTGATTTCTGCGACTGCGGCTG
TCTCAGATCGATGCTGCTTGTTTGCTGCTGATTCAGTGAATTAGGATCGA
TCGCAGATCGATTAATAGCATCCTGTGCCATTGTTTTTAGAGAAATCGTA
TCGACGACATTGCAGCTGTTGTCATTAGTACTGTCCGAGACAGGAAGACC
ATTTTGTATGTGAGGGGAATTTTGTTGGAAGATTGA

BO05462.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8426-PA 2535 l(2)NC136-RA 1629..2532 922..19 4520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-RB 3919 CG8426-RB 2196..3111 935..19 4545 99.8 Minus
Not3-RA 3406 CG8426-RA 2196..3111 935..19 4545 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5657642..5658218 324..900 2885 100 Plus
2R 25286936 2R 5657371..5657583 114..326 1065 100 Plus
2R 25286936 2R 5657214..5657313 19..118 500 100 Plus
Blast to na_te.dros performed 2015-02-13 01:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6819 750..653 122 61.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2371 705..653 118 71.7 Minus

BO05462.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:45 Download gff for BO05462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8426-PA 1617..2535 16..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:47 Download gff for BO05462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8426-PA 1617..2535 16..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:10:26 Download gff for BO05462.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 2196..3115 15..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:25 Download gff for BO05462.3prime
Subject Subject Range Query Range Percent Splice Strand
Not3-RA 2196..3115 15..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:25 Download gff for BO05462.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5657209..5657309 15..114 98 <- Plus
2R 5657372..5657581 115..324 100 <- Plus
2R 5657643..5658217 325..899 100 <- Plus
2R 5660601..5660635 900..935 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:10:26 Download gff for BO05462.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1544714..1544814 15..114 98 <- Plus
arm_2R 1544877..1545086 115..324 100 <- Plus
arm_2R 1545148..1545722 325..899 100 <- Plus
arm_2R 1548106..1548140 900..935 94   Plus

BO05462.5prime Sequence

931 bp (789 high quality bases) assembled on 2005-12-02

> BO05462.5prime
GAAGTTATCAGTCGACATGGCTGCGACGAGAAAATTGCAAGGCGAAATTG
ATCGATGTTTAAAAAAGGTAGCAGAGGGCGTTGAAACGTTTGAGGATATT
TGGAAAAAAGTACACAATGCGACAAACACCAATCAGAAGCAAAAACATCT
GCAGGAGAAGTATGAGGCAGACCTCAAAAAGGAAATCAAGAAATTGCAAC
GACTTCGCGACCAAATTAAATCATGGATTGCATCAGCTGAAATTAAGGAT
AAGAGCTCCCTTCTTGAGAATCGACGTCTCATTGAAACACAAATGGAACG
CTTTAAGGTGGTTGAGCGCGAGACGAAAACAAAAGCCTACTCCAAGGAAG
GCTTGGGGGCTGCACAAAAGATGGATCCTGCCCAGCGTATTAAAGACGAC
GCACGCAATTGGTTAACCAGCTCAATAAGTTCCCTTCAAATACAAATTGA
CCAGTATGAGAGCGAGATCGAATCGTTGTTGGCAGGTAAAAAGAAACGTT
TAGATCGAGACAAGCAGGAGCGAATGGATGACCTACGAGGAAAGTTGGAC
CGCCATAAGTTCCACATAACAAAGCTGGAAACTCTGCTTAGGCTGCTTGA
CAATGACGGCGTCGAAGCAGAGCAGGTAAACAAGATCAAAGACGATGTCG
AATACTACATTGATTCATCGCAAGAGCCAGACTTTGAGGAAAATGAGTTC
ATATACGATGATATAATTGGTCTTGATGAAGTGGAGCTAAGTGGCACGGC
TACCACGGACAGCAACAACAGCAACGAGACAAGCGGTTCTCCCAGCAGTG
TCACATCCGGAGGCAGTCCATCACAGTCCCCTGTCACGGTTCAACAAATT
TTAAACACTTCGTCGCANGGGGCAGCTAGTAGTGGTAGCAGCGCAGCTAG
CGCAGCACTGTTTCAGCAGCAGCTGACAGCG

BO05462.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8426-PA 2535 l(2)NC136-RA 1..915 17..931 4531 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-RB 3919 CG8426-RB 580..1494 17..931 4549 99.8 Plus
Not3-RA 3406 CG8426-RA 580..1494 17..931 4549 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5661527..5662168 931..290 3184 99.7 Minus
2R 25286936 2R 5662227..5662378 289..138 760 100 Minus
2R 25286936 2R 5662456..5662555 139..40 500 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:49:31 has no hits.

BO05462.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:46 Download gff for BO05462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8426-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:48 Download gff for BO05462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8426-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:44 Download gff for BO05462.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 573..1494 9..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:57 Download gff for BO05462.5prime
Subject Subject Range Query Range Percent Splice Strand
Not3-RA 573..1494 9..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:57 Download gff for BO05462.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5662227..5662376 140..289 100 <- Minus
2R 5662456..5662553 42..139 100 <- Minus
2R 5661527..5662168 290..931 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:44 Download gff for BO05462.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1549032..1549673 290..931 99 <- Minus
arm_2R 1549732..1549881 140..289 100 <- Minus
arm_2R 1549961..1550058 42..139 100 <- Minus

BO05462.complete Sequence

2566 bp assembled on 2008-08-14

GenBank Submission: FJ630048

> BO05462.complete
GAAGTTATCAGTCGACATGGCTGCGACGAGAAAATTGCAAGGCGAAATTG
ATCGATGTTTAAAAAAGGTAGCAGAGGGCGTTGAAACGTTTGAGGATATT
TGGAAAAAAGTACACAATGCGACAAACACCAATCAGAAGCAAAAACATCT
GCAGGAGAAGTATGAGGCAGACCTCAAAAAGGAAATCAAGAAATTGCAAC
GACTTCGCGACCAAATTAAATCATGGATTGCATCAGCTGAAATTAAGGAT
AAGAGCTCCCTTCTTGAGAATCGACGTCTCATTGAAACACAAATGGAACG
CTTTAAGGTGGTTGAGCGCGAGACGAAAACAAAAGCCTACTCCAAGGAAG
GCTTGGGGGCTGCACAAAAGATGGATCCTGCCCAGCGTATTAAAGACGAC
GCACGCAATTGGTTAACCAGCTCAATAAGTTCCCTTCAAATACAAATTGA
CCAGTATGAGAGCGAGATCGAATCGTTGTTGGCAGGTAAAAAGAAACGTT
TAGATCGAGACAAGCAGGAGCGAATGGATGACCTACGAGGAAAGTTGGAC
CGCCATAAGTTCCACATAACAAAGCTGGAAACTCTGCTTAGGCTGCTTGA
CAATGACGGCGTCGAAGCAGAGCAGGTAAACAAGATCAAAGACGATGTCG
AATACTACATTGATTCATCGCAAGAGCCAGACTTTGAGGAAAATGAGTTC
ATATACGATGATATAATTGGTCTTGATGAAGTGGAGCTAAGTGGCACGGC
TACCACGGACAGCAACAACAGCAACGAGACAAGCGGTTCTCCAAGCAGTG
TCACATCCGGAGGCAGTCCATCACAGTCCCCTGTCACGGTTCAACAAATT
TTAAACACTTCGTCGCAGGGGGCAGCTAGTAGTGGTAGCAGCGCAGCTAG
CGCAGCACTGTTTCAGCAGCAGCTGACAGCGGCACAATCGAATGGCAACA
ATGTGGGCTACGCGAGCGACACAAGTGCAGCTTCTTCGTCTGCTACAACA
TCTACAGATCCTGCAGGCGGCACAGTTGCTGTAAATTGTGTTGGAGGGCT
AGCCGATAAACGCAACAAGAGCAGCGAAAGCAATGCCCTAAAATTGAAAC
CACAACCTCATCAACTTATAAAACCTACCCCTGTACGAGCCACGGCCAAG
CTGCCTCTGAGCAGTGATACCCAAGTCAATAAGATTGTCAGTTCAACTCC
CAGCAAAAATCAGCAACAGCTGCCTACAGCAGCTTCAATCGTTGCAACCT
CCGCTATGCAATCGCAAAGCAGTATCGGAAGTTGCAGCTCCACTGGAGGA
ACGGGAGCATCTCAATCAGCTTCTAGTGGTAACAATCCTGGTAACAATCC
TGCGGTTCAGCCAAATGCTCCAACGCCTGGTCAAAGCGGCATTGCCGCTG
CAGCAGCTTCGACTAATGTTGTTTCGGCGACGATTGTGAGCAGCGCCAAT
GTTCAAGGCCAATCTGTGATCCAACCAACACCAACAATTGCATTTGCTGC
AGTAGCAAAACACAATACATCACTCCTGGAAAATGGTCCTGTTTTGCAAC
AGCAACTAGCAGTAACTCCTACTGTGGCAGCTATCGTAGGAGCTGGAACG
CAGGCGCAGCAAAAACATGTGCCACCATTATCCAATCTTCAAACAAATTC
CCCTCACATACAAAATGGTCTTCCTGTCTCGGACAGTACTAATGACAACA
GCTGCAATGTCGTCGATACGATTTCTCTAAAAACAATGGCACAGGATGCT
ATTAATCGATCTGCGATCGATCCTAATTCACTGAATCAGCAGCAAACAAG
CAGCATCGATCTGAGACAGCCGCAGTCGCAGAAATCACTTCTCCAACATT
TCAACTCTGAAACCAACACGAATCAACAGCAATTGACATCGCAGCAGCAG
CAACAGCTTCAGAATAACTCCCTTGCTGCGACCACAGGTTCTAACAACGG
AACTTCAACTGGTAGTGGTCTCATGAATGTAGCAAACGCTACTGGTCAGC
CTATCAGCGGCAATGCCAAAACGCATGCGTGCCAACCCCAACAGATGGCC
ACGACGGAAGCGCACATTCCCACACTGCTTGGTGTGACACCACTTGGGCC
AACACCACTTCAAAAGGAGCACCAAATGCAGTTCCAAATGATGGAAGCTG
CCTACTATCACCTGCCACAGCCTATGGACACGGAAAAGCTACAAACGTAC
TTTCATCGCGCACCAGTGCTCACGCCATCGCACTATCCCCAGGCACAGAT
GCCAATATATGATACAGTTGAGTTTTATCAACGACTCTCAACGGAGACCC
TTTTTTTTGTGTTCTACTATATGGAGGGCTCCAAGGCCCAGTATCTAGCG
GCCAAGGCCTTAAAAAAGCAGAGCTGGCGTTTCCACACAAAGTATATGAT
GTGGTTTCAAAGGCACGAGGAGCCGAAGATTATCAACGATGATTACGAAC
AGGGTACGTACATCTATTTTGATTATGAAAAGTGGAGTCAGCGAAAGAAG
GAGGGATTCACCTTTGAATACAAGTACTTAGAGGACAAGGAGCTGAATGC
AAGCTTTCTAGACCAT

BO05462.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-RB 2535 CG8426-PB 1..2532 17..2548 12660 100 Plus
Not3-RA 2535 CG8426-PA 1..2532 17..2548 12660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-RB 3919 CG8426-RB 580..3111 17..2548 12660 100 Plus
Not3-RA 3406 CG8426-RA 580..3111 17..2548 12660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5661359..5662168 1099..290 4050 100 Minus
2R 25286936 2R 5657642..5658218 2243..1667 2885 100 Minus
2R 25286936 2R 5660807..5661157 1520..1170 1755 100 Minus
2R 25286936 2R 5657371..5657583 2453..2241 1065 100 Minus
2R 25286936 2R 5662227..5662378 289..138 760 100 Minus
2R 25286936 2R 5660599..5660747 1669..1521 745 100 Minus
2R 25286936 2R 5657214..5657313 2548..2449 500 100 Minus
2R 25286936 2R 5662456..5662555 139..40 500 100 Minus
2R 25286936 2R 5661219..5661288 1169..1100 350 100 Minus
Blast to na_te.dros performed 2014-11-27 16:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6819 1817..1914 122 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2371 1862..1914 118 71.7 Plus

BO05462.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:28 Download gff for BO05462.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 571..3113 9..2552 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:42 Download gff for BO05462.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 580..3111 17..2550 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:24 Download gff for BO05462.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 578..3109 17..2550 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:00 Download gff for BO05462.complete
Subject Subject Range Query Range Percent Splice Strand
Not3-RA 580..3111 17..2550 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:00 Download gff for BO05462.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5662456..5662553 42..139 100 <- Minus
2R 5662619..5662643 17..41 100   Minus
2R 5657211..5657309 2453..2550 97 <- Minus
2R 5657372..5657581 2243..2452 100 <- Minus
2R 5657643..5658217 1668..2242 100 <- Minus
2R 5660601..5660747 1521..1667 100 <- Minus
2R 5660807..5661157 1170..1520 100 <- Minus
2R 5661219..5661288 1100..1169 100 <- Minus
2R 5661359..5662168 290..1099 100 <- Minus
2R 5662227..5662376 140..289 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:42 Download gff for BO05462.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1549732..1549881 140..289 100 <- Minus
arm_2R 1549961..1550058 42..139 100 <- Minus
arm_2R 1550124..1550148 17..41 100   Minus
arm_2R 1544716..1544814 2453..2550 97 <- Minus
arm_2R 1544877..1545086 2243..2452 100 <- Minus
arm_2R 1545148..1545722 1668..2242 100 <- Minus
arm_2R 1548106..1548252 1521..1667 100 <- Minus
arm_2R 1548312..1548662 1170..1520 100 <- Minus
arm_2R 1548724..1548793 1100..1169 100 <- Minus
arm_2R 1548864..1549673 290..1099 100 <- Minus

BO05462.pep Sequence

Translation from 16 to 2566

> BO05462.pep
MAATRKLQGEIDRCLKKVAEGVETFEDIWKKVHNATNTNQKQKHLQEKYE
ADLKKEIKKLQRLRDQIKSWIASAEIKDKSSLLENRRLIETQMERFKVVE
RETKTKAYSKEGLGAAQKMDPAQRIKDDARNWLTSSISSLQIQIDQYESE
IESLLAGKKKRLDRDKQERMDDLRGKLDRHKFHITKLETLLRLLDNDGVE
AEQVNKIKDDVEYYIDSSQEPDFEENEFIYDDIIGLDEVELSGTATTDSN
NSNETSGSPSSVTSGGSPSQSPVTVQQILNTSSQGAASSGSSAASAALFQ
QQLTAAQSNGNNVGYASDTSAASSSATTSTDPAGGTVAVNCVGGLADKRN
KSSESNALKLKPQPHQLIKPTPVRATAKLPLSSDTQVNKIVSSTPSKNQQ
QLPTAASIVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPGNNPAVQPN
APTPGQSGIAAAAASTNVVSATIVSSANVQGQSVIQPTPTIAFAAVAKHN
TSLLENGPVLQQQLAVTPTVAAIVGAGTQAQQKHVPPLSNLQTNSPHIQN
GLPVSDSTNDNSCNVVDTISLKTMAQDAINRSAIDPNSLNQQQTSSIDLR
QPQSQKSLLQHFNSETNTNQQQLTSQQQQQLQNNSLAATTGSNNGTSTGS
GLMNVANATGQPISGNAKTHACQPQQMATTEAHIPTLLGVTPLGPTPLQK
EHQMQFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDT
VEFYQRLSTETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRH
EEPKIINDDYEQGTYIYFDYEKWSQRKKEGFTFEYKYLEDKELNASFLDH

BO05462.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-PB 844 CG8426-PB 1..844 1..844 4301 100 Plus
Not3-PA 844 CG8426-PA 1..844 1..844 4301 100 Plus
Mur89F-PC 2158 CG4090-PC 270..678 235..666 168 22.4 Plus
Mur89F-PB 2159 CG4090-PB 270..678 235..666 168 22.4 Plus
CG46026-PA 666 CG46026-PA 183..653 239..696 166 19 Plus