Clone BO05465 Report

Search the DGRC for BO05465

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:65
Vector:pDNR-Dual
Associated Gene/Transcriptsu(Hw)-RA
Protein status:BO05465.pep: validated full length
Sequenced Size:2857

Clone Sequence Records

BO05465.3prime Sequence

882 bp (839 high quality bases) assembled on 2005-12-02

> BO05465.3prime
ATGGTCTAGAAAGCTTGCAGCTTTCTCTTGTTCGCCTACAGGTTTTTTCT
TATTTTCCCGGACCACCTCCTCTGAGTTATCCTTATCCACAGCTTTCCCC
ACGATCTCCTTCTTTTCAGATTTCGCCGAAACTTCCTTCTTTTCCGGTTT
CTCTCTGATTTCATTTGTTTTAGTTTCGCCTGTGACCGACACCGCTTCTT
CATCACCTGAATGTGACTCATTGTCTTTGTCCAATCCACCTTCGTCCTGA
TCCTCATCTCCCAGTACATATTCGATCACATCGTCGATGGGGAAATTATT
GAGCAGCGACTTGATGGAATCGTTGTGAATGACCACGGTAAAGAGCAGTT
TGCAGTACTCTCGCATGCGGCTACCGTAGTCAAGCTCAGCGTAGTTTTCG
CCACCTTTGGTTAGGTCGTGGCCACAGTTCTCGATCACTTTGCAGAGCAC
CGTCTCCTCGGGGGCATTGGGCCAGCCGTATTTCTTTAGGATCGGTGGAT
CCACTAGCATATCAATAAGTTTACCCACATTCTCTTTGAGCTTTATGTCC
TCCTCAGTTAGAATTTCGCCACTGAAGTCATCCTCGCTACATGATTCTTC
CAAATTATCTGCGATGGCAGCGGCCAGACTGGCGGCCAGGGATTTACGCT
GCTCTTTCTTTACCACCGGCGAGACCTGCGCCTCCTCCTTCTTCGCCTCG
GGCTTAACGCCAGCCTCATCCGTCAGCTGCTCTCCCTCGATGGCCCCGTC
CAGGGGCAGAATTGTGTATGTTTCGTTTTCTAGTGTAATGGTCTGGGCCG
CGCCATCGCCTTCGTCCACGAGGAATTCACGCACCACAACGCCATTCCCG
TCCGTTTGGCTAGAAATTAACGAGCCCGCCGA

BO05465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8573-PA 2826 su(Hw)-RA 1960..2823 882..19 4320 100 Minus
CG8573-PB 2826 su(Hw)-RB 1960..2823 882..19 4320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
su(Hw)-RC 3682 CG8573-RC 2463..3326 882..19 4320 100 Minus
su(Hw)-RB 3508 CG8573-RB 2289..3152 882..19 4320 100 Minus
su(Hw)-RA 3260 CG8573-RA 2041..2904 882..19 4320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14304811..14305674 19..882 4320 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:51:17 has no hits.

BO05465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:51 Download gff for BO05465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8573-PA 1961..2826 16..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:55 Download gff for BO05465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8573-PB 1961..2826 16..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:00 Download gff for BO05465.3prime
Subject Subject Range Query Range Percent Splice Strand
su(Hw)-RA 2020..2882 19..881 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:35 Download gff for BO05465.3prime
Subject Subject Range Query Range Percent Splice Strand
su(Hw)-RA 2042..2904 19..881 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:35 Download gff for BO05465.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14304811..14305673 19..881 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:00 Download gff for BO05465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10130533..10131395 19..881 100   Plus

BO05465.5prime Sequence

917 bp (785 high quality bases) assembled on 2005-12-02

> BO05465.5prime
GAAGTTATCAGTCGACATGAGTGCCTCCAAGGAGGGCAAGGAAAAGAAGG
GCAAGCTGCTGGGTGTGGAAAACATTTCGCCGCCTAAGGACAAACGTCCC
GCCACCAGGATGAAGCTCTTGAATGACGTGGGAGCTGGTGAGGATTCGGA
GGCAAGCACTACTACTACCACATCAAGAACTCCCTCCAACAAGCAGGAGA
AGCGTGGCAGTGTCGCTGGATCGCGCATCAAAATACTCAATGAAGAAATA
CTGGGCACTCCGAAAACTGAGAAACGGGGCGCCACAAAGAGCACAGCTCC
GGCTGCTTCCACTGTGAAGATTCTGAACGAGAAAAAGACACCCAGTGCTA
CCGTGACAGCCGTGGAAACTACCAAGATCAAGACGTCTCCCAGTAAAAGA
AAGAAAATGGAGCACTATGTACTTCAGGCTGTGAAATCAGAAAATACCAA
GGCGGACACCACGGTTACCGTGGTCACCGAAGAAGATGACACCATTGATT
TCATTCTAGCGGATGATGAGGAAGTAGTTCCGGGCAGAATAGAAAATAAC
AACGGCCAGGAGATCGTTGTCACCGAGGACGATGAGGATCTAGGGGAGGA
TGGTGATGAGGACGGTGAAGACTCCTCAGGCAAGGGCAACTCTAGCCAGA
CAAAGATCAAGGAGATCGTGGAGCATGTGTGTGGCAAATGCTACAAGACC
TTCCGTCGCGTTCAGAGTCTGAAAAAGCATCTAGAGTTCTGTCGCTATGA
CAGTGGGTATCATTTGCGCAAAGCCGACATGCTTAAGAACCTGGAGAAGA
TCGAGAAGGATGCCGTGGTGATGGAGAAGAAGGACATATGCTTCTGCTGC
AGCGAAGTTACGACACCTTCCATCTGGGTCACATTAACTGTCCCGACTGC
CCCAGGTCGGTTAAGAC

BO05465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8573-PA 2826 su(Hw)-RA 1..840 17..856 4200 100 Plus
CG8573-PB 2826 su(Hw)-RB 1..840 17..856 4200 100 Plus
CG8573-PA 2826 su(Hw)-RA 840..902 855..917 265 96.8 Plus
CG8573-PB 2826 su(Hw)-RB 840..902 855..917 265 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
su(Hw)-RC 3682 CG8573-RC 502..1405 15..917 4465 99.7 Plus
su(Hw)-RB 3508 CG8573-RB 328..1231 15..917 4465 99.7 Plus
su(Hw)-RA 3260 CG8573-RA 80..983 15..917 4465 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14307098..14307957 873..15 4250 99.9 Minus
3R 32079331 3R 14306988..14307039 917..866 200 92.3 Minus
Blast to na_te.dros performed on 2015-02-12 00:12:52 has no hits.

BO05465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:52 Download gff for BO05465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8573-PA 1..902 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:44:56 Download gff for BO05465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8573-PB 1..902 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:45 Download gff for BO05465.5prime
Subject Subject Range Query Range Percent Splice Strand
su(Hw)-RA 50..961 6..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:16 Download gff for BO05465.5prime
Subject Subject Range Query Range Percent Splice Strand
su(Hw)-RA 72..983 6..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:16 Download gff for BO05465.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14306988..14307031 874..917 95 <- Minus
3R 14307098..14307965 6..873 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:45 Download gff for BO05465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10132710..10132753 874..917 95 <- Minus
arm_3R 10132820..10133687 6..873 99   Minus

BO05465.complete Sequence

2857 bp assembled on 2007-03-23

GenBank Submission: FJ630051

> BO05465.complete
GAAGTTATCAGTCGACATGAGTGCCTCCAAGGAGGGCAAGGAAAAGAAGG
GCAAGCTGCTGGGTGTGGAAAACATTTCGCCGCCTAAGGACAAACGTCCC
GCCACCAGGATGAAGCTCTTGAATGACGTGGGAGCTGGTGAGGATTCGGA
GGCAAGCACTACTACTACCACATCAAGAACTCCCTCCAACAAGCAGGAGA
AGCGTGGCAGTGTCGCTGGATCGCGCATCAAAATACTCAATGAAGAAATA
CTGGGCACTCCGAAAACTGAGAAACGGGGCGCCACAAAGAGCACAGCTCC
GGCTGCTTCCACTGTGAAGATTCTGAACGAGAAAAAGACACCCAGTGCTA
CCGTGACAGCCGTGGAAACTACCAAGATCAAGACGTCTCCCAGTAAAAGA
AAGAAAATGGAGCACTATGTACTTCAGGCTGTGAAATCAGAAAATACCAA
GGCGGACACCACGGTTACCGTGGTCACCGAAGAAGATGACACCATTGATT
TCATTCTAGCGGATGATGAGGAAGTAGTTCCGGGCAGAATAGAAAATAAC
AACGGCCAGGAGATCGTTGTCACCGAGGACGATGAGGATCTAGGGGAGGA
TGGTGATGAGGACGGTGAAGACTCCTCAGGCAAGGGCAACTCTAGCCAGA
CAAAGATCAAGGAGATCGTGGAGCATGTGTGTGGCAAATGCTACAAGACC
TTCCGTCGCGTTCAGAGTCTGAAAAAGCATCTAGAGTTCTGTCGCTATGA
CAGTGGGTATCATTTGCGCAAAGCCGACATGCTTAAGAACCTGGAGAAGA
TCGAGAAGGATGCCGTGGTGATGGAGAAGAAGGACATATGCTTCTGCTGC
AGCGAAAGTTACGACACCTTCCATCTGGGTCACATTAACTGTCCCGACTG
CCCCAAGTCGTTTAAGACACAGACCAGTTACGAACGCCACATTTTCATCA
CTCACTCCGAGTTCAGCGATTTTCCTTGCTCCATTTGCAATGCCAACTTG
CGCAGCGAGGCCTTGTTGGCGCTCCACGAGGAACAGCACAAGTCACGTGG
CAAGCCGTATGCATGCAAGATCTGCGGCAAGGACTTCACCCGCTCGTACC
ACTTGAAGCGCCACCAGAAGTACTCATCGTGCTCATCGAACGAGACCGAT
ACCATGAGCTGCAAGGTGTGCGATCGTGTCTTCTATCGGCTGGACAACCT
GCGATCGCATTTGAAGCAGCATTTGGGTACACAGGTGGTTAAAAAGCCGG
AGTACATGTGCCACACGTGCAAGAATTGTTTCTACAGCCTGTCCACGCTG
AACATTCACATACGCACTCATACGGGGGAGAAACCATTTGACTGCGATCT
TTGCGACAAGAAGTTTTCTGCATTGGTGGCCCTTAAAAAGCATCGACGCT
ATCACACTGGCGAGAAACCATACAGTTGCACTGTGTGCAACCAAGCATTT
GCCGTAAAGGAAGTGCTCAATCGTCACATGAAACGGCACACTGGAGAGCG
TCCGCACAAGTGTGATGAATGTGGCAAGAGTTTTATCCAGGCCACCCAGC
TGCGCACCCATTCCAAAACCCATATTCGCCCCTTTCCCTGTGAGCAATGC
GACGAAAAATTCAAAACAGAGAAACAACTTGAGCGCCATGTGAAGACCCA
TTCTCGCACAAAACGCCCCGTCTTTTCCTGCGCCGAGTGCAAGCGTAATT
TCCGCACTCCAGCATTGCTCAAGGAGCATATGGACGAGGGAAAACACAGC
CCGAAACAACAACGGTCATCAATGCGATCGGCCGTCAAAATTATGGAACG
CACGGATTGCGCCATTTGCGATAAGAACTTTGACAGCAGCGATACCCTGC
GACGGCACATACGCACCGTTCACGAATGCGATCCGGATGACATTTTTGGC
GTTGAGCCGCATCCATCAAAGCGGGCAAAGAAGGACATCGAATCGGAGGA
GGTTGTACCAGTGGCGTTAAACACATCGGCGGGCTCGTTAATTTCTAGCC
AAACGGACGGGAATGGCGTTGTGGTGCGTGAATTCCTCGTGGACGAAGGC
GATGGCGCGGCCCAGACCATTACACTAGAAAACGAAACATACACAATTCT
GCCCCTGGACGGGGCCATCGAGGGAGAGCAGCTGACGGATGAGGCTGGCG
TTAAGCCCGAGGCGAAGAAGGAGGAGGCGCAGGTCTCGCCGGTGGTAAAG
AAAGAGCAGCGTAAATCCCTGGCCGCCAGTCTGGCCGCTGCCATCGCAGA
TAATTTGGAAGAATCATGTAGCGAGGATGACTTCAGTGGCGAAATTCTAA
CTGAGGAGGACATAAAGCTCAAAGAGAATGTGGGTAAACTTATTGATATG
CTAGTGGATCCACCGATCCTAAAGAAATACGGCTGGCCCAATGCCCCCGA
GGAGACGGTGCTCTGCAAAGTGATCGAGAACTGTGGCCACGACCTAACCA
AAGGTGGCGAAAACTACGCTGAGCTTGACTACGGTAGCCGCATGCGAGAG
TACTGCAAACTGCTCTTTACCGTGGTCATTCACAACGATTCCATCAAGTC
GCTGCTCAATAATTTCCCCATCGACGATGTGATCGAATATGTACTGGGAG
ATGAGGATCAGGACGAAGGTGGATTGGACAAAGACAATGAGTCACATTCA
GGTGATGAAGAAGCGGTGTCGGTCACAGGCGAAACTAAAACAAATGAAAT
CAGAGAGAAACCGGAAAAGAAGGAAGTTTCGGCGAAATCTGAAAAGAAGG
AGATCGTGGGGAAAGCTGTGGATAAGGATAACTCAGAGGAGGTGGTCCGG
GAAAATAAGAAAAAACCTGTAGGCGAACAAGAGAAAGCTGCAAGCTTTCT
AGACCAT

BO05465.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
su(Hw)-RC 2826 CG8573-PC 1..2823 17..2839 14115 100 Plus
su(Hw)-RB 2826 CG8573-PB 1..2823 17..2839 14115 100 Plus
su(Hw)-RA 2826 CG8573-PA 1..2823 17..2839 14115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
su(Hw)-RC 3682 CG8573-RC 502..3326 15..2839 14125 100 Plus
su(Hw)-RB 3508 CG8573-RB 328..3152 15..2839 14125 100 Plus
su(Hw)-RA 3260 CG8573-RA 80..2904 15..2839 14125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14304811..14305898 2839..1752 5440 100 Minus
3R 32079331 3R 14307098..14307957 874..15 4300 100 Minus
3R 32079331 3R 14306604..14307039 1302..867 2150 99.5 Minus
3R 32079331 3R 14306153..14306344 1626..1435 960 100 Minus
3R 32079331 3R 14306414..14306546 1435..1303 665 100 Minus
3R 32079331 3R 14305960..14306084 1751..1627 625 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:33:49 has no hits.

BO05465.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:42 Download gff for BO05465.complete
Subject Subject Range Query Range Percent Splice Strand
su(Hw)-RB 1..2826 17..2842 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:59 Download gff for BO05465.complete
Subject Subject Range Query Range Percent Splice Strand
su(Hw)-RB 318..3150 6..2839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:21 Download gff for BO05465.complete
Subject Subject Range Query Range Percent Splice Strand
su(Hw)-RA 60..2882 17..2841 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:43 Download gff for BO05465.complete
Subject Subject Range Query Range Percent Splice Strand
su(Hw)-RB 318..3150 6..2839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:20 Download gff for BO05465.complete
Subject Subject Range Query Range Percent Splice Strand
su(Hw)-RA 82..2904 17..2841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:20 Download gff for BO05465.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14306153..14306343 1436..1626 100 <- Minus
3R 14306414..14306546 1303..1435 100 <- Minus
3R 14304808..14305898 1752..2841 99 <- Minus
3R 14305960..14306084 1627..1751 100 <- Minus
3R 14306604..14307031 875..1302 100 <- Minus
3R 14307098..14307955 17..874 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:21 Download gff for BO05465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10132326..10132753 875..1302 100 <- Minus
arm_3R 10130530..10131620 1752..2841 99 <- Minus
arm_3R 10131682..10131806 1627..1751 100 <- Minus
arm_3R 10131875..10132065 1436..1626 100 <- Minus
arm_3R 10132136..10132268 1303..1435 100 <- Minus
arm_3R 10132820..10133677 17..874 100   Minus

BO05465.pep Sequence

Translation from 16 to 2857

> BO05465.pep
MSASKEGKEKKGKLLGVENISPPKDKRPATRMKLLNDVGAGEDSEASTTT
TTSRTPSNKQEKRGSVAGSRIKILNEEILGTPKTEKRGATKSTAPAASTV
KILNEKKTPSATVTAVETTKIKTSPSKRKKMEHYVLQAVKSENTKADTTV
TVVTEEDDTIDFILADDEEVVPGRIENNNGQEIVVTEDDEDLGEDGDEDG
EDSSGKGNSSQTKIKEIVEHVCGKCYKTFRRVQSLKKHLEFCRYDSGYHL
RKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFK
TQTSYERHIFITHSEFSDFPCSICNANLRSEALLALHEEQHKSRGKPYAC
KICGKDFTRSYHLKRHQKYSSCSSNETDTMSCKVCDRVFYRLDNLRSHLK
QHLGTQVVKKPEYMCHTCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKF
SALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCD
ECGKSFIQATQLRTHSKTHIRPFPCEQCDEKFKTEKQLERHVKTHSRTKR
PVFSCAECKRNFRTPALLKEHMDEGKHSPKQQRSSMRSAVKIMERTDCAI
CDKNFDSSDTLRRHIRTVHECDPDDIFGVEPHPSKRAKKDIESEEVVPVA
LNTSAGSLISSQTDGNGVVVREFLVDEGDGAAQTITLENETYTILPLDGA
IEGEQLTDEAGVKPEAKKEEAQVSPVVKKEQRKSLAASLAAAIADNLEES
CSEDDFSGEILTEEDIKLKENVGKLIDMLVDPPILKKYGWPNAPEETVLC
KVIENCGHDLTKGGENYAELDYGSRMREYCKLLFTVVIHNDSIKSLLNNF
PIDDVIEYVLGDEDQDEGGLDKDNESHSGDEEAVSVTGETKTNEIREKPE
KKEVSAKSEKKEIVGKAVDKDNSEEVVRENKKKPVGEQEKAASFLDH

BO05465.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
su(Hw)-PC 941 CG8573-PC 1..941 1..941 4957 100 Plus
su(Hw)-PB 941 CG8573-PB 1..941 1..941 4957 100 Plus
su(Hw)-PA 941 CG8573-PA 1..941 1..941 4957 100 Plus
Meics-PB 571 CG8474-PB 230..565 292..616 491 30.4 Plus
Meics-PA 583 CG8474-PA 242..577 292..616 491 30.4 Plus
Meics-PB 571 CG8474-PB 230..544 321..648 421 28 Plus
Meics-PB 571 CG8474-PB 164..571 152..549 415 26.9 Plus