Clone Sequence Records
BO05468.3prime Sequence
918 bp (796 high quality bases) assembled on 2005-12-02
> BO05468.3prime
ATGGTCTAGAAAGCTTGCCCTCTCGAACTGCAGCACGTAGTCTTTGAGCG
GGCCCGGCAGGTTCAGGCAGTTGATGTTTTGGGCCAGCTTGCGGTTCATC
GCCTCATAGATGGCCCAGCGGGATAGCTGCTTTAGACTGCGCGGCCGACG
GTAGAGGGACGAGATCAGGGCTATTAGCTGCTCCGTCTTCTTACTGGGCA
CCTGTGCCACGTAAAAGTTGTGTAGGGACTTGAGGCAATTAAAGAGCGGC
TCGTGGTGCATAGTCAGGTAGAAGAGGTGAATGACGCGTGTATACGTCGC
GTTCGGATCGTTCAAGATGAACTCCTTCTTCGTGATCAGGATGATGTAGT
AGAAAAGCAGGTAGCACGAGTTGGTGCGAAACGAACTGCGAAAAGTTGCC
AGCTCGTTGGAGAAGATGGCGGTGCCGGGCGTTGTCTTTCCGCTGAGCAC
TATGTTGGGGTCAGCCCCGTACTGGATTAGCGTCAGAGTCAACTCGTAGA
CGCACTCCATGTCGTGGCAGGTGCGCACATTATGCACCATGTCCATCACC
GCCTGCAGAATGTGCTGATATGTCTTATTGCAGTCCAGGCCGTGCTGAAG
TAGCATCAGTAGGATGTTCTTGATGAAGTCGAAGTTGGTGCGCTTTTGAG
CATCACAATTAAGCGTAAAGTTTTCGCTAACCGTAAACACGAGCACGTGC
AGTGGTTTAAGGTTGGCGCGGTAGGAGCAATTGGGATTCGCTCCGTGCTG
CAGCAGCATGCGGATGCAGTTCAGATAGCAGACCTTCATGGAGTGCGTGA
AATGATGCAGGTGATCCTTATTAATTAATGGCACTAGCAGAAACATAATG
GGCACAGATCCATCTCTCCCCACGATGTTGGGGTCTCCATTCTCCTTGAT
AAGCATGCTTAGCAGTTC
BO05468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13933-PA | 2016 | CG13933-RA | 1114..2013 | 918..19 | 4475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13933-RA | 3165 | CG13933-RA | 1470..2369 | 918..19 | 4485 | 99.9 | Minus |
| CG13933-RB | 3162 | CG13933-RB | 1470..2366 | 918..19 | 4430 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1772605..1773371 | 19..785 | 3835 | 100 | Plus |
| 3L | 28110227 | 3L | 1773418..1773527 | 779..888 | 535 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:35:35 has no hits.
BO05468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:55 Download gff for
BO05468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-PA | 1114..2016 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:00 Download gff for
BO05468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-PA | 1114..2016 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:18 Download gff for
BO05468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 1470..2373 | 13..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:08:45 Download gff for
BO05468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 1470..2373 | 13..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:08:45 Download gff for
BO05468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1772601..1773369 | 13..783 | 99 | <- | Plus |
| 3L | 1773423..1773526 | 784..887 | 99 | <- | Plus |
| 3L | 1773578..1773608 | 888..918 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:18 Download gff for
BO05468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1772601..1773369 | 13..783 | 99 | <- | Plus |
| arm_3L | 1773423..1773526 | 784..887 | 99 | <- | Plus |
| arm_3L | 1773578..1773608 | 888..918 | 100 | | Plus |
BO05468.5prime Sequence
890 bp (822 high quality bases) assembled on 2005-12-02
> BO05468.5prime
GAAGTTATCAGTCGACATGGGCGGCTCCGTGAGCCAGGTGTTCCGATCCG
GATCCGCACTCCTCTCGCATCGCGACGGAAAGCTGTCCAAGGCCACCGAA
GAGACCATACAGACACTGTTTGACATCCTGCGCGCCAATCCGAAGGTTTC
CCTGCAGACCCTCGAGAGCCTGCTCATCCAGATCCCAAAGAACGAGAATA
TCCTGGCCATGCATGACGACTATGGATACAACATCCTGCAGCGCAGCGTC
GGCCTCAACCACATCGATCTCACTAAGTGGCTGCTGCATCGCCACCGCCC
GGACGTTAACCGCTCGCCCTGCTCCCTGCCCCTGCACATCGCCACCCTGC
GTGGCTACGAGGAGTGCGTGGAGTTATTGCTTCGGCATGGCGCACGTATC
GACGTGGACACTCGGATGTGTTTTCCTGGCGCCCACACGAGAAATTGCGA
GGAGAGCGGCAAATGGCACAACAACGTGGACGATGTCAGCGAGCGGCTAA
ACACAAAGCTACAGAACGCGCTCTTCTATGCAATCGACGGAGATCAGTAC
AATGTTCTAAGCTTGCTCACCCAAAAAATGGAGGAGCCGTGGATCCCCTT
CCGCGTGAAAAAGCCCCTGCTCCACTTGGCCTGCGAACGCGGCGCCTGGA
ATTGCGTCCAGCAACTAGTGGTCACCCGTTCGGAGGAAATCAATCTTATT
ATGGACGAGTATTACCCGATTCACCATGCCGTGCTTCATGATGGTCGCTT
TCTTGAGCTACTCATTCATCAGGGTGCAATTACAACTGTACGCACCTGCA
CCCAACAAATGACCCTACTGCATGTGGTTATTTTTGCTGCTCGTAAGTCT
GCTGAAGACACGTTGGCCACTCTTCGCATCCTGCTGGAAC
BO05468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13933-PA | 2016 | CG13933-RA | 1..874 | 17..890 | 4345 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13933-RB | 3162 | CG13933-RB | 357..1230 | 17..890 | 4355 | 99.9 | Plus |
| CG13933-RA | 3165 | CG13933-RA | 357..1230 | 17..890 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1773981..1774791 | 827..17 | 4040 | 99.9 | Minus |
| 3L | 28110227 | 3L | 1773848..1773911 | 890..827 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:53:04 has no hits.
BO05468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:56 Download gff for
BO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:02 Download gff for
BO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:12 Download gff for
BO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 353..1230 | 10..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:37 Download gff for
BO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 353..1230 | 10..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:37 Download gff for
BO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1773848..1773910 | 828..890 | 100 | <- | Minus |
| 3L | 1773981..1774795 | 10..827 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:12 Download gff for
BO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1773848..1773910 | 828..890 | 100 | <- | Minus |
| arm_3L | 1773981..1774795 | 10..827 | 99 | | Minus |
BO05468.complete Sequence
2047 bp assembled on 2008-08-14
GenBank Submission: FJ638627
> BO05468.complete
GAAGTTATCAGTCGACATGGGCGGCTCCGTGAGCCAGGTGTTCCGATCCG
GATCCGCACTCCTCTCGCATCGCGACGGAAAGCTGTCCAAGGCCACCGAA
GAGACCATACAGACACTGTTTGACATCCTGCGCGCCAATCCGAAGGTTTC
CCTGCAGACCCTCGAGAGCCTGCTCATCCAGATCCCAAAGAACGAGAATA
TCCTGGCCATGCATGACGACTATGGATACAACATCCTGCAGCGCAGCGTC
GGCCTCAACCACATCGATCTCACTAAGTGGCTGCTGCATCGCCACCGCCC
GGACGTTAACCGCTCGCCCTGCTCCCTGCCCCTGCACATCGCCACCCTGC
GTGGCTACGAGGAGTGCGTGGAGTTATTGCTTCGGCATGGCGCACGTATC
GACGTGGACACTCGGATGTGTTTTCCTGGCGCCCACACGAGAAATTGCGA
GGAGAGCGGCAAATGGCACAACAACGTGGACGATGTCAGCGAGCGGCTAA
ACACAAAGCTACAGAACGCGCTCTTCTATGCAATCGACGGAGATCAGTAC
AATGTTCTAAGCTTGCTCACCCAAAAAATGGAGGAGCCGTGGATCCCCTT
CCGCGTGAAAAAGCCCCTGCTCCACTTGGCCTGCGAACGCGGCGCCTGGA
ATTGCGTCCAGCAACTAGTGGTCACCCGTTCGGAGGAAATCAATCTTATT
ATGGACGAGTATTACCCGATTCACCATGCCGTGCTTCATGATGGTCGCTT
TCTTGAGCTACTCATTCATCAGGGTGCAATTACAACTGTACGCACCTGCA
CCCAACAAATGACCCTACTGCATGTGGTTATTTTTGCTGCTCGTAAGTCT
GCTGAAGACACGTTGGCCACTCTTCGCATCCTGCTGGAACGAGGATGCAA
AGAGCTAATCAACGCACCAGACTCGTTGGGAAACACTCCACTGCACGCCC
TGATAGTGCGCTATGCCCTTGAGGAAGCCCGGTACGGCTACGACAAGTGG
AGCAAGTGGGATGTGTTGCACCTAGTGCGATTTCTCCTGCAGAACGGGGC
CAAGCAATCGATTAACCAAGCGGGGAACAGTGCCATGGCCTGTGTGTTTC
GACACCTGCGAGACTGGGAAGTCTGCTACGAACTGCTAAGCATGCTTATC
AAGGAGAATGGAGACCCCAACATCGTGGGGAGAGATGGATCTGTGCCCAT
TATGGTTCTGCTAGTGCCATTAATTAATAAGGATCACCTGCATCATTTCA
CGCACTCCATGAAGGTCTGCTATCTGAACTGCATCCGCATGCTGCTGCAG
CACGGAGCGAATCCCAATTGCTCCTACCGCGCCAACCTTAAACCACTGCA
CGTGCTCGTGTTTACGGTTAGCGAAAACTTTACGCTTAATTGTGATGCTC
AAAAGCGCACCAACTTCGACTTCATCAAGAACATCCTACTGATGCTACTT
CAGCACGGCCTGGACTGCAATAAGACATATCAGCACATTCTGCAGGCGGT
GATGGACATGGTGCATAATGTGCGCACCTGCCACGACATGGAGTGCGTCT
ACGAGTTGACTCTGACGCTAATCCAGTACGGGGCTGACCCCAACATAGTG
CTCAGCGGAAAGACAACGCCCGGCACCGCCATCTTCTCCAACGAGCTGGC
AACTTTTCGCAGTTCGTTTCGCACCAACTCGTGCTACCTGCTTTTCTACT
ACATCATCCTGATCACGAAGAAGGAGTTCATCTTGAACGATCCGAACGCG
ACGTATACACGCGTCATTCACCTCTTCTACCTGACTATGCACCACGAGCC
GCTCTTTAATTGCCTCAAGTCCCTACACAACTTTTACGTGGCACAGGTGC
CCAGTAAGAAGACGGAGCAGCTAATAGCCCTGATCTCGTCCCTCTACCGT
CGGCCGCGCAGTCTAAAGCAGCTATCCCGCTGGGCCATCTATGAGGCGAT
GAACCGCAAGCTGGCCCAAAACATCAACTGCCTGAACCTGCCGGGCCCGC
TCAAAGACTACGTGCTGCAGTTCGAGAGGGCAAGCTTTCTAGACCAT
BO05468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13933-RA | 2016 | CG13933-PA | 1..2013 | 17..2029 | 10050 | 100 | Plus |
| CG13933-RB | 2013 | CG13933-PB | 1..2010 | 17..2029 | 9970 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13933-RA | 3165 | CG13933-RA | 357..2369 | 17..2029 | 10050 | 100 | Plus |
| CG13933-RB | 3162 | CG13933-RB | 357..2366 | 17..2029 | 9970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1773981..1774791 | 827..17 | 4040 | 99.9 | Minus |
| 3L | 28110227 | 3L | 1772605..1773371 | 2029..1263 | 3835 | 100 | Minus |
| 3L | 28110227 | 3L | 1773577..1773911 | 1161..827 | 1675 | 100 | Minus |
| 3L | 28110227 | 3L | 1773418..1773527 | 1269..1160 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:48:59 has no hits.
BO05468.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:50 Download gff for
BO05468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 349..2369 | 10..2035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:49 Download gff for
BO05468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 357..2369 | 17..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:27 Download gff for
BO05468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 353..2365 | 17..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:55 Download gff for
BO05468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 357..2369 | 17..2031 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:55 Download gff for
BO05468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1773578..1773910 | 828..1160 | 100 | <- | Minus |
| 3L | 1772601..1773369 | 1265..2031 | 99 | <- | Minus |
| 3L | 1773423..1773526 | 1161..1264 | 100 | <- | Minus |
| 3L | 1773981..1774791 | 17..827 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:49 Download gff for
BO05468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1772601..1773369 | 1265..2031 | 99 | <- | Minus |
| arm_3L | 1773423..1773526 | 1161..1264 | 100 | <- | Minus |
| arm_3L | 1773578..1773910 | 828..1160 | 100 | <- | Minus |
| arm_3L | 1773981..1774791 | 17..827 | 99 | | Minus |
BO05468.pep Sequence
Translation from 16 to 2047
> BO05468.pep
MGGSVSQVFRSGSALLSHRDGKLSKATEETIQTLFDILRANPKVSLQTLE
SLLIQIPKNENILAMHDDYGYNILQRSVGLNHIDLTKWLLHRHRPDVNRS
PCSLPLHIATLRGYEECVELLLRHGARIDVDTRMCFPGAHTRNCEESGKW
HNNVDDVSERLNTKLQNALFYAIDGDQYNVLSLLTQKMEEPWIPFRVKKP
LLHLACERGAWNCVQQLVVTRSEEINLIMDEYYPIHHAVLHDGRFLELLI
HQGAITTVRTCTQQMTLLHVVIFAARKSAEDTLATLRILLERGCKELINA
PDSLGNTPLHALIVRYALEEARYGYDKWSKWDVLHLVRFLLQNGAKQSIN
QAGNSAMACVFRHLRDWEVCYELLSMLIKENGDPNIVGRDGSVPIMVLLV
PLINKDHLHHFTHSMKVCYLNCIRMLLQHGANPNCSYRANLKPLHVLVFT
VSENFTLNCDAQKRTNFDFIKNILLMLLQHGLDCNKTYQHILQAVMDMVH
NVRTCHDMECVYELTLTLIQYGADPNIVLSGKTTPGTAIFSNELATFRSS
FRTNSCYLLFYYIILITKKEFILNDPNATYTRVIHLFYLTMHHEPLFNCL
KSLHNFYVAQVPSKKTEQLIALISSLYRRPRSLKQLSRWAIYEAMNRKLA
QNINCLNLPGPLKDYVLQFERASFLDH
BO05468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13933-PA | 671 | CG13933-PA | 1..671 | 1..671 | 3552 | 100 | Plus |
| CG13933-PB | 670 | CG13933-PB | 1..670 | 1..671 | 3534 | 99.9 | Plus |
