Clone Sequence Records
BO05469.3prime Sequence
805 bp (802 high quality bases) assembled on 2005-12-02
> BO05469.3prime
ATGGTCTAGAAAGCTTGCTGCAGACACTTTTTTGGTGACGGCCAAAATTG
CTCTCTCTCTCCGCTCGCGTAAAATGGAGTACTTTAAAATCTTGTCAAAG
CAACAACAATTTATGCTTCCTGCCACATTTATAGACCTAGGAGATATGCA
AAATATTTCACTAGTCTTTAGCCGCTTTTGTGCATAAAATCGACCGACTG
TCATTGCCGCTGGAAGTGCAGGTGGGACTACAATTGTGATAAGGTCAAGT
GATTCAACTGCTATTTTCACAGGATCCGTTCCACGCAAGATTTTAGTTAC
AAGCGTATAAATAAATCCTACACATGCTATTATGGCCAGAAACTGGATAA
ATTTGTACGAATCTTGTTCAAACTTGTAGTCCACAGGGGGGGGATAAAGA
ATAGAACGTATAAGTTCTCCTTTTGCCGTTATGTTTCCAGTGTTTATTAC
AAATGCTAATACTTTTTTGGAGCCAATATAACGAGTCTGAATAACCTTTG
TGCCACAAAAAAGTGTATGTCTGGCATGCTCTGTTTTATCAAAAATCATG
TCACGTTTCGACGGTAGAGGAGTTTTGGTCACTGGCACACTTTCACCAGT
AAGCATAGACTCATCTAGAATGCAGTTTCCTGATATTAAGATTGCATCGC
AATGCAGCGTACACCCTGATGAGGGTATTTCAATGATGTCCCCAGGTACT
ATCGCTCGCGTTGGAAGCTCTTTAGACAGTCCTTTATGATCAACAACCCA
AGCATTACCAGTGTTATATACTGTTTTTTGGAGCACATCCTGATTCTTTT
TCGTT
BO05469.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32000-PE | 1788 | CG32000-RE | 999..1785 | 805..19 | 3935 | 100 | Minus |
CG32000-PF | 1566 | CG32000-RF | 777..1563 | 805..19 | 3935 | 100 | Minus |
CG32000-PD | 1977 | CG32000-RD | 1188..1974 | 805..19 | 3935 | 100 | Minus |
CG32000-PC | 1494 | CG32000-RC | 705..1491 | 805..19 | 3935 | 100 | Minus |
CG32000-PG | 4167 | CG32000-RG | 999..1714 | 805..90 | 3580 | 100 | Minus |
CG32000-PA | 3945 | CG32000-RA | 777..1492 | 805..90 | 3580 | 100 | Minus |
CG32000-PB | 3945 | CG32000-RB | 777..1492 | 805..90 | 3580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32000-RC | 2238 | CG32000-RC | 1262..2048 | 805..19 | 3935 | 100 | Minus |
CG32000-RD | 3219 | CG32000-RD | 2243..3029 | 805..19 | 3935 | 100 | Minus |
CG32000-RF | 2234 | CG32000-RF | 1258..2044 | 805..19 | 3935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 137805..138310 | 797..292 | 2530 | 100 | Minus |
4 | 1348131 | 4 | 138374..138574 | 291..91 | 1005 | 100 | Minus |
4 | 1348131 | 4 | 139820..139893 | 92..19 | 370 | 100 | Minus |
2R | 25286936 | 2R | 4324087..4324129 | 61..19 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2015-02-13 02:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1360 | 3409 | 1360 1360 3409bp | 3285..3356 | 92..19 | 202 | 80 | Minus |
BO05469.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:57 Download gff for
BO05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-PC | 705..1494 | 18..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:03 Download gff for
BO05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-PF | 777..1566 | 18..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:59 Download gff for
BO05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-RF | 1258..2044 | 19..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:34 Download gff for
BO05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-RF | 1258..2044 | 19..805 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:34 Download gff for
BO05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 137805..138310 | 292..797 | 100 | -> | Minus |
4 | 138374..138574 | 91..291 | 100 | -> | Minus |
4 | 139822..139893 | 19..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:59 Download gff for
BO05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 158431..158936 | 292..797 | 100 | -> | Minus |
arm_4 | 159000..159200 | 91..291 | 100 | -> | Minus |
arm_4 | 160448..160519 | 19..90 | 100 | | Minus |
BO05469.5prime Sequence
885 bp (857 high quality bases) assembled on 2005-12-02
> BO05469.5prime
GAAGTTATCAGTCGACATGTTCGCAAGTCAGAGCAAGGCTTGTGATTCTC
CGAGTGAGACTGTGCACCTACAGTCTTTACCAAATCATATTGAAGATCTA
AAATTTAGAAATTCTGATGTTGAAACGGATGATGATCTTCACTTCCCTGG
AATTGCAGCTAAAAATAAAATCTTGAAGCTTAGCTGGTGGCATTCTCCTG
TTGATATGCATTATGTAGCGACAGAATCAGTGCAACCAAAAAAAAGTGAT
AAAGTACCGAGCAATAAAATTAAAAAAGTTGAGAACAATAATACTTTAGT
TAATGGTTGTAGTAAAACTTCAGCAAGATCTGTTCCATTACTCAAATATA
ATCGTCCAGACCAGGATGGGGACAGCGAAGAAAACATAACAAGCGTTCTT
GAGCCAAACGTTGATGAAATCTATTCTAAAGACTCAGAACGGCTTGTGGA
TGATTCAAAACCATGTATTGGACTATTAAATCCAGATCAGGAGGATCAAA
TGAAAGTATGCGGTTATCGACGTTCTCTTATGCGAACTGGTTTTTGTTGG
GCATGCATCTTCTTAACTGGAGGTCTGTTGCGCCTCGTGTTACATTGGTG
GCGTCATTTATATTTATATGCCACTTGCTCTCAATGTTCATTGGAGGAGG
CAGAACAGGTTTTGGTAACAGAGGATTATCAAGGAAAGCACAAAATGTAC
CATGTAAAGCAAATTCAAGTCCTAACGTCGAGCAACCTTAAGACACTTTT
GGAAAAGGAACAGCAATCCATAGAAAGAACTCATATAGAATGCGATCATG
TAGAAAACGTCCTTCAACTGTCAGTTCATTTTACCTCGGCCCAATTCAAA
AAATGCTCATCAATACGAATTTTTTCGCTGCAAGC
BO05469.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32000-PD | 1977 | CG32000-RD | 1..858 | 17..874 | 4290 | 100 | Plus |
CG32000-PE | 1788 | CG32000-RE | 1..669 | 206..874 | 3345 | 100 | Plus |
CG32000-PG | 4167 | CG32000-RG | 1..669 | 206..874 | 3345 | 100 | Plus |
CG32000-PF | 1566 | CG32000-RF | 25..447 | 452..874 | 2115 | 100 | Plus |
CG32000-PA | 3945 | CG32000-RA | 25..447 | 452..874 | 2115 | 100 | Plus |
CG32000-PB | 3945 | CG32000-RB | 25..447 | 452..874 | 2115 | 100 | Plus |
CG32000-PC | 1494 | CG32000-RC | 1..375 | 500..874 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32000-RH | 5743 | CG32000-RH | 1060..1927 | 17..885 | 4320 | 99.9 | Plus |
CG32000-RD | 3219 | CG32000-RD | 1056..1923 | 17..885 | 4320 | 99.9 | Plus |
CG32000-RG | 4782 | CG32000-RG | 234..966 | 151..885 | 3625 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 134529..134964 | 17..452 | 2180 | 100 | Plus |
4 | 1348131 | 4 | 136878..137168 | 452..742 | 1455 | 100 | Plus |
4 | 1348131 | 4 | 137223..137332 | 742..851 | 550 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 12:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 1792..1898 | 225..329 | 115 | 58.9 | Plus |
BO05469.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:58 Download gff for
BO05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-PD | 1..868 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:04 Download gff for
BO05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-PD | 1..868 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:59 Download gff for
BO05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-RD | 1050..1923 | 8..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:34 Download gff for
BO05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-RD | 1050..1923 | 8..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:34 Download gff for
BO05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 137391..137423 | 852..885 | 97 | | Plus |
4 | 136879..137167 | 453..741 | 100 | -> | Plus |
4 | 134523..134964 | 8..452 | 99 | -> | Plus |
4 | 137223..137332 | 742..851 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:59 Download gff for
BO05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 155149..155590 | 8..452 | 99 | -> | Plus |
arm_4 | 157505..157793 | 453..741 | 100 | -> | Plus |
arm_4 | 157849..157958 | 742..851 | 100 | -> | Plus |
arm_4 | 158017..158049 | 852..885 | 97 | | Plus |
BO05469.complete Sequence
2008 bp assembled on 2008-08-14
GenBank Submission: FJ630053
> BO05469.complete
GAAGTTATCAGTCGACATGTTCGCAAGTCAGAGCAAGGCTTGTGATTCTC
CGAGTGAGACTGTGCACCTACAGTCTTTACCAAATCATATTGAAGATCTA
AAATTTAGAAATTCTGATGTTGAAACGGATGATGATCTTCACTTCCCTGG
AATTGCAGCTAAAAATAAAATCTTGAAGCTTAGCTGGTGGCATTCTCCTG
TTGATATGCATTATGTAGCGACAGAATCAGTGCAACCAAAAAAAAGTGAT
AAAGTACCGAGCAATAAAATTAAAAAAGTTGAGAACAATAATACTTTAGT
TAATGGTTGTAGTAAAACTTCAGCAAGATCTGTTCCATTACTCAAATATA
ATCGTCCAGACCAGGATGGGGACAGCGAAGAAAACATAACAAGCGTTCTT
GAGCCAAACGTTGATGAAATCTATTCTAAAGACTCAGAACGGCTTGTGGA
TGATTCAAAACCATGTATTGGACTATTAAATCCAGATCAGGAGGATCAAA
TGAAAGTATGCGGTTATCGACGTTCTCTTATGCGAACTGGTTTTTGTTGG
GCATGCATCTTCTTAACTGGAGGTCTGTTGCGCCTCGTGTTACATTGGTG
GCGTCATTTATATTTATATGCCACTTGCTCTCAATGTTCATTGGAGGAGG
CAGAACAGGTTTTGGTAACAGAGGATTATCAAGGAAAGCACAAAATGTAC
CATGTAAAGCAAATTCAAGTCCTAACGTCGAGCAACCTTAAGACACTTTT
GGAAAAGGAACAGCAATCCATAGAAAGAACTCATATAGAATGCGATCATG
TAGAAAACGTCCTTCAACTGTCAGTTCATTTTACCTCGGCCCAATTCAAA
AAATGCTCATCAATACGAATTTTTCGCTGCAAGCAATTGGTTTATGCTTG
GAACAATAATACAAATAGATTTCAAAGGATAAATGGACTCGACCTAAATA
TTCCTTGTTCATATTATCACCAACAGCGTGGATTACCTGTACATGAACAG
ATTTCAAGGCGAATTGTTTTCGGAGATAATGAGATAACTGTACCATTGCG
AGATTTCAAGACATTGCTGTTCTTAGAAGTACTTAATCCTTTTTACGTTT
TTCAATTATTTTCTGTAATTCTTTGGTTTACATATGATTACTATTACTAT
GCTTGCGTAATACTCTTGATGTCAGTTTTTGGTATAACAGTGTCTGTTTT
ACAAACGAAAAAGAATCAGGATGTGCTCCAAAAAACAGTATATAACACTG
GTAATGCTTGGGTTGTTGATCATAAAGGACTGTCTAAAGAGCTTCCAACG
CGAGCGATAGTACCTGGGGACATCATTGAAATACCCTCATCAGGGTGTAC
GCTGCATTGCGATGCAATCTTAATATCAGGAAACTGCATTCTAGATGAGT
CTATGCTTACTGGTGAAAGTGTGCCAGTGACCAAAACTCCTCTACCGTCG
AAACGTGACATGATTTTTGATAAAACAGAGCATGCCAGACATACACTTTT
TTGTGGCACAAAGGTTATTCAGACTCGTTATATTGGCTCCAAAAAAGTAT
TAGCATTTGTAATAAACACTGGAAACATAACGGCAAAAGGAGAACTTATA
CGTTCTATTCTTTATCCCCCCCCTGTGGACTACAAGTTTGAACAAGATTC
GTACAAATTTATCCAGTTTCTGGCCATAATAGCATGTGTAGGATTTATTT
ATACGCTTGTAACTAAAATCTTGCGTGGAACGGATCCTGTGAAAATAGCA
GTTGAATCACTTGACCTTATCACAATTGTAGTCCCACCTGCACTTCCAGC
GGCAATGACAGTCGGTCGATTTTATGCACAAAAGCGGCTAAAGACTAGTG
AAATATTTTGCATATCTCCTAGGTCTATAAATGTGGCAGGAAGCATAAAT
TGTTGTTGCTTTGACAAGATTTTAAAGTACTCCATTTTACGCGAGCGGAG
AGAGAGAGCAATTTTGGCCGTCACCAAAAAAGTGTCTGCAGCAAGCTTTC
TAGACCAT
BO05469.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32000-RD | 1977 | CG32000-PD | 1..1974 | 17..1990 | 9870 | 100 | Plus |
CG32000-RH | 4356 | CG32000-PH | 1..1903 | 17..1919 | 9515 | 100 | Plus |
CG32000-RE | 1788 | CG32000-PE | 1..1785 | 206..1990 | 8925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32000-RD | 3219 | CG32000-RD | 1056..3029 | 17..1990 | 9870 | 100 | Plus |
CG32000-RH | 5743 | CG32000-RH | 1060..2962 | 17..1919 | 9515 | 100 | Plus |
CG32000-RE | 2262 | CG32000-RE | 239..2072 | 157..1990 | 9170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 137805..138310 | 1212..1717 | 2530 | 100 | Plus |
4 | 1348131 | 4 | 134529..134964 | 17..452 | 2180 | 100 | Plus |
4 | 1348131 | 4 | 137391..137752 | 852..1213 | 1810 | 100 | Plus |
4 | 1348131 | 4 | 136878..137168 | 452..742 | 1455 | 100 | Plus |
4 | 1348131 | 4 | 138374..138574 | 1718..1918 | 1005 | 100 | Plus |
4 | 1348131 | 4 | 137223..137332 | 742..851 | 550 | 100 | Plus |
4 | 1348131 | 4 | 139820..139893 | 1917..1990 | 370 | 100 | Plus |
2R | 25286936 | 2R | 4324087..4324129 | 1948..1990 | 185 | 95.3 | Plus |
Blast to na_te.dros performed 2014-11-27 15:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1360 | 3409 | 1360 1360 3409bp | 3285..3356 | 1917..1990 | 202 | 80 | Plus |
BO05469.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:09 Download gff for
BO05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-RD | 1046..3025 | 8..1990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:16 Download gff for
BO05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-RD | 1061..3029 | 22..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:14 Download gff for
BO05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-RD | 1057..3025 | 22..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:28 Download gff for
BO05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32000-RD | 1061..3029 | 22..1992 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:28 Download gff for
BO05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 134534..134964 | 22..452 | 100 | -> | Plus |
4 | 136879..137167 | 453..741 | 100 | -> | Plus |
4 | 137223..137332 | 742..851 | 100 | -> | Plus |
4 | 137391..137752 | 852..1213 | 100 | -> | Plus |
4 | 137807..138310 | 1214..1717 | 100 | -> | Plus |
4 | 138374..138574 | 1718..1918 | 100 | -> | Plus |
4 | 139822..139893 | 1919..1992 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:16 Download gff for
BO05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 155160..155590 | 22..452 | 100 | -> | Plus |
arm_4 | 157505..157793 | 453..741 | 100 | -> | Plus |
arm_4 | 157849..157958 | 742..851 | 100 | -> | Plus |
arm_4 | 158017..158378 | 852..1213 | 100 | -> | Plus |
arm_4 | 158433..158936 | 1214..1717 | 100 | -> | Plus |
arm_4 | 159000..159200 | 1718..1918 | 100 | -> | Plus |
arm_4 | 160448..160519 | 1919..1992 | 97 | | Plus |
BO05469.pep Sequence
Translation from 16 to 2008
> BO05469.pep
MFASQSKACDSPSETVHLQSLPNHIEDLKFRNSDVETDDDLHFPGIAAKN
KILKLSWWHSPVDMHYVATESVQPKKSDKVPSNKIKKVENNNTLVNGCSK
TSARSVPLLKYNRPDQDGDSEENITSVLEPNVDEIYSKDSERLVDDSKPC
IGLLNPDQEDQMKVCGYRRSLMRTGFCWACIFLTGGLLRLVLHWWRHLYL
YATCSQCSLEEAEQVLVTEDYQGKHKMYHVKQIQVLTSSNLKTLLEKEQQ
SIERTHIECDHVENVLQLSVHFTSAQFKKCSSIRIFRCKQLVYAWNNNTN
RFQRINGLDLNIPCSYYHQQRGLPVHEQISRRIVFGDNEITVPLRDFKTL
LFLEVLNPFYVFQLFSVILWFTYDYYYYACVILLMSVFGITVSVLQTKKN
QDVLQKTVYNTGNAWVVDHKGLSKELPTRAIVPGDIIEIPSSGCTLHCDA
ILISGNCILDESMLTGESVPVTKTPLPSKRDMIFDKTEHARHTLFCGTKV
IQTRYIGSKKVLAFVINTGNITAKGELIRSILYPPPVDYKFEQDSYKFIQ
FLAIIACVGFIYTLVTKILRGTDPVKIAVESLDLITIVVPPALPAAMTVG
RFYAQKRLKTSEIFCISPRSINVAGSINCCCFDKILKYSILRERRERAIL
AVTKKVSAASFLDH
BO05469.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32000-PD | 658 | CG32000-PD | 1..658 | 1..658 | 3459 | 100 | Plus |
CG32000-PH | 1451 | CG32000-PH | 1..634 | 1..634 | 3350 | 100 | Plus |
CG32000-PE | 595 | CG32000-PE | 1..595 | 64..658 | 3118 | 100 | Plus |
CG32000-PG | 1388 | CG32000-PG | 1..571 | 64..634 | 3009 | 100 | Plus |
CG32000-PF | 521 | CG32000-PF | 9..521 | 146..658 | 2697 | 100 | Plus |