Clone BO05469 Report

Search the DGRC for BO05469

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG32000-RD
Protein status:BO05469.pep: Imported from assembly
Sequenced Size:2008

Clone Sequence Records

BO05469.3prime Sequence

805 bp (802 high quality bases) assembled on 2005-12-02

> BO05469.3prime
ATGGTCTAGAAAGCTTGCTGCAGACACTTTTTTGGTGACGGCCAAAATTG
CTCTCTCTCTCCGCTCGCGTAAAATGGAGTACTTTAAAATCTTGTCAAAG
CAACAACAATTTATGCTTCCTGCCACATTTATAGACCTAGGAGATATGCA
AAATATTTCACTAGTCTTTAGCCGCTTTTGTGCATAAAATCGACCGACTG
TCATTGCCGCTGGAAGTGCAGGTGGGACTACAATTGTGATAAGGTCAAGT
GATTCAACTGCTATTTTCACAGGATCCGTTCCACGCAAGATTTTAGTTAC
AAGCGTATAAATAAATCCTACACATGCTATTATGGCCAGAAACTGGATAA
ATTTGTACGAATCTTGTTCAAACTTGTAGTCCACAGGGGGGGGATAAAGA
ATAGAACGTATAAGTTCTCCTTTTGCCGTTATGTTTCCAGTGTTTATTAC
AAATGCTAATACTTTTTTGGAGCCAATATAACGAGTCTGAATAACCTTTG
TGCCACAAAAAAGTGTATGTCTGGCATGCTCTGTTTTATCAAAAATCATG
TCACGTTTCGACGGTAGAGGAGTTTTGGTCACTGGCACACTTTCACCAGT
AAGCATAGACTCATCTAGAATGCAGTTTCCTGATATTAAGATTGCATCGC
AATGCAGCGTACACCCTGATGAGGGTATTTCAATGATGTCCCCAGGTACT
ATCGCTCGCGTTGGAAGCTCTTTAGACAGTCCTTTATGATCAACAACCCA
AGCATTACCAGTGTTATATACTGTTTTTTGGAGCACATCCTGATTCTTTT
TCGTT

BO05469.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32000-PE 1788 CG32000-RE 999..1785 805..19 3935 100 Minus
CG32000-PF 1566 CG32000-RF 777..1563 805..19 3935 100 Minus
CG32000-PD 1977 CG32000-RD 1188..1974 805..19 3935 100 Minus
CG32000-PC 1494 CG32000-RC 705..1491 805..19 3935 100 Minus
CG32000-PG 4167 CG32000-RG 999..1714 805..90 3580 100 Minus
CG32000-PA 3945 CG32000-RA 777..1492 805..90 3580 100 Minus
CG32000-PB 3945 CG32000-RB 777..1492 805..90 3580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32000-RC 2238 CG32000-RC 1262..2048 805..19 3935 100 Minus
CG32000-RD 3219 CG32000-RD 2243..3029 805..19 3935 100 Minus
CG32000-RF 2234 CG32000-RF 1258..2044 805..19 3935 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 137805..138310 797..292 2530 100 Minus
4 1348131 4 138374..138574 291..91 1005 100 Minus
4 1348131 4 139820..139893 92..19 370 100 Minus
2R 25286936 2R 4324087..4324129 61..19 185 95.3 Minus
Blast to na_te.dros performed 2015-02-13 02:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 3285..3356 92..19 202 80 Minus

BO05469.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:57 Download gff for BO05469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32000-PC 705..1494 18..805 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:03 Download gff for BO05469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32000-PF 777..1566 18..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:59 Download gff for BO05469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32000-RF 1258..2044 19..805 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:34 Download gff for BO05469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32000-RF 1258..2044 19..805 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:34 Download gff for BO05469.3prime
Subject Subject Range Query Range Percent Splice Strand
4 137805..138310 292..797 100 -> Minus
4 138374..138574 91..291 100 -> Minus
4 139822..139893 19..90 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:59 Download gff for BO05469.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 158431..158936 292..797 100 -> Minus
arm_4 159000..159200 91..291 100 -> Minus
arm_4 160448..160519 19..90 100   Minus

BO05469.5prime Sequence

885 bp (857 high quality bases) assembled on 2005-12-02

> BO05469.5prime
GAAGTTATCAGTCGACATGTTCGCAAGTCAGAGCAAGGCTTGTGATTCTC
CGAGTGAGACTGTGCACCTACAGTCTTTACCAAATCATATTGAAGATCTA
AAATTTAGAAATTCTGATGTTGAAACGGATGATGATCTTCACTTCCCTGG
AATTGCAGCTAAAAATAAAATCTTGAAGCTTAGCTGGTGGCATTCTCCTG
TTGATATGCATTATGTAGCGACAGAATCAGTGCAACCAAAAAAAAGTGAT
AAAGTACCGAGCAATAAAATTAAAAAAGTTGAGAACAATAATACTTTAGT
TAATGGTTGTAGTAAAACTTCAGCAAGATCTGTTCCATTACTCAAATATA
ATCGTCCAGACCAGGATGGGGACAGCGAAGAAAACATAACAAGCGTTCTT
GAGCCAAACGTTGATGAAATCTATTCTAAAGACTCAGAACGGCTTGTGGA
TGATTCAAAACCATGTATTGGACTATTAAATCCAGATCAGGAGGATCAAA
TGAAAGTATGCGGTTATCGACGTTCTCTTATGCGAACTGGTTTTTGTTGG
GCATGCATCTTCTTAACTGGAGGTCTGTTGCGCCTCGTGTTACATTGGTG
GCGTCATTTATATTTATATGCCACTTGCTCTCAATGTTCATTGGAGGAGG
CAGAACAGGTTTTGGTAACAGAGGATTATCAAGGAAAGCACAAAATGTAC
CATGTAAAGCAAATTCAAGTCCTAACGTCGAGCAACCTTAAGACACTTTT
GGAAAAGGAACAGCAATCCATAGAAAGAACTCATATAGAATGCGATCATG
TAGAAAACGTCCTTCAACTGTCAGTTCATTTTACCTCGGCCCAATTCAAA
AAATGCTCATCAATACGAATTTTTTCGCTGCAAGC

BO05469.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32000-PD 1977 CG32000-RD 1..858 17..874 4290 100 Plus
CG32000-PE 1788 CG32000-RE 1..669 206..874 3345 100 Plus
CG32000-PG 4167 CG32000-RG 1..669 206..874 3345 100 Plus
CG32000-PF 1566 CG32000-RF 25..447 452..874 2115 100 Plus
CG32000-PA 3945 CG32000-RA 25..447 452..874 2115 100 Plus
CG32000-PB 3945 CG32000-RB 25..447 452..874 2115 100 Plus
CG32000-PC 1494 CG32000-RC 1..375 500..874 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32000-RH 5743 CG32000-RH 1060..1927 17..885 4320 99.9 Plus
CG32000-RD 3219 CG32000-RD 1056..1923 17..885 4320 99.9 Plus
CG32000-RG 4782 CG32000-RG 234..966 151..885 3625 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 134529..134964 17..452 2180 100 Plus
4 1348131 4 136878..137168 452..742 1455 100 Plus
4 1348131 4 137223..137332 742..851 550 100 Plus
Blast to na_te.dros performed 2015-02-13 12:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 1792..1898 225..329 115 58.9 Plus

BO05469.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:58 Download gff for BO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32000-PD 1..868 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:04 Download gff for BO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32000-PD 1..868 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:59 Download gff for BO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32000-RD 1050..1923 8..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:34 Download gff for BO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32000-RD 1050..1923 8..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:34 Download gff for BO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
4 137391..137423 852..885 97   Plus
4 136879..137167 453..741 100 -> Plus
4 134523..134964 8..452 99 -> Plus
4 137223..137332 742..851 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:59 Download gff for BO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 155149..155590 8..452 99 -> Plus
arm_4 157505..157793 453..741 100 -> Plus
arm_4 157849..157958 742..851 100 -> Plus
arm_4 158017..158049 852..885 97   Plus

BO05469.complete Sequence

2008 bp assembled on 2008-08-14

GenBank Submission: FJ630053

> BO05469.complete
GAAGTTATCAGTCGACATGTTCGCAAGTCAGAGCAAGGCTTGTGATTCTC
CGAGTGAGACTGTGCACCTACAGTCTTTACCAAATCATATTGAAGATCTA
AAATTTAGAAATTCTGATGTTGAAACGGATGATGATCTTCACTTCCCTGG
AATTGCAGCTAAAAATAAAATCTTGAAGCTTAGCTGGTGGCATTCTCCTG
TTGATATGCATTATGTAGCGACAGAATCAGTGCAACCAAAAAAAAGTGAT
AAAGTACCGAGCAATAAAATTAAAAAAGTTGAGAACAATAATACTTTAGT
TAATGGTTGTAGTAAAACTTCAGCAAGATCTGTTCCATTACTCAAATATA
ATCGTCCAGACCAGGATGGGGACAGCGAAGAAAACATAACAAGCGTTCTT
GAGCCAAACGTTGATGAAATCTATTCTAAAGACTCAGAACGGCTTGTGGA
TGATTCAAAACCATGTATTGGACTATTAAATCCAGATCAGGAGGATCAAA
TGAAAGTATGCGGTTATCGACGTTCTCTTATGCGAACTGGTTTTTGTTGG
GCATGCATCTTCTTAACTGGAGGTCTGTTGCGCCTCGTGTTACATTGGTG
GCGTCATTTATATTTATATGCCACTTGCTCTCAATGTTCATTGGAGGAGG
CAGAACAGGTTTTGGTAACAGAGGATTATCAAGGAAAGCACAAAATGTAC
CATGTAAAGCAAATTCAAGTCCTAACGTCGAGCAACCTTAAGACACTTTT
GGAAAAGGAACAGCAATCCATAGAAAGAACTCATATAGAATGCGATCATG
TAGAAAACGTCCTTCAACTGTCAGTTCATTTTACCTCGGCCCAATTCAAA
AAATGCTCATCAATACGAATTTTTCGCTGCAAGCAATTGGTTTATGCTTG
GAACAATAATACAAATAGATTTCAAAGGATAAATGGACTCGACCTAAATA
TTCCTTGTTCATATTATCACCAACAGCGTGGATTACCTGTACATGAACAG
ATTTCAAGGCGAATTGTTTTCGGAGATAATGAGATAACTGTACCATTGCG
AGATTTCAAGACATTGCTGTTCTTAGAAGTACTTAATCCTTTTTACGTTT
TTCAATTATTTTCTGTAATTCTTTGGTTTACATATGATTACTATTACTAT
GCTTGCGTAATACTCTTGATGTCAGTTTTTGGTATAACAGTGTCTGTTTT
ACAAACGAAAAAGAATCAGGATGTGCTCCAAAAAACAGTATATAACACTG
GTAATGCTTGGGTTGTTGATCATAAAGGACTGTCTAAAGAGCTTCCAACG
CGAGCGATAGTACCTGGGGACATCATTGAAATACCCTCATCAGGGTGTAC
GCTGCATTGCGATGCAATCTTAATATCAGGAAACTGCATTCTAGATGAGT
CTATGCTTACTGGTGAAAGTGTGCCAGTGACCAAAACTCCTCTACCGTCG
AAACGTGACATGATTTTTGATAAAACAGAGCATGCCAGACATACACTTTT
TTGTGGCACAAAGGTTATTCAGACTCGTTATATTGGCTCCAAAAAAGTAT
TAGCATTTGTAATAAACACTGGAAACATAACGGCAAAAGGAGAACTTATA
CGTTCTATTCTTTATCCCCCCCCTGTGGACTACAAGTTTGAACAAGATTC
GTACAAATTTATCCAGTTTCTGGCCATAATAGCATGTGTAGGATTTATTT
ATACGCTTGTAACTAAAATCTTGCGTGGAACGGATCCTGTGAAAATAGCA
GTTGAATCACTTGACCTTATCACAATTGTAGTCCCACCTGCACTTCCAGC
GGCAATGACAGTCGGTCGATTTTATGCACAAAAGCGGCTAAAGACTAGTG
AAATATTTTGCATATCTCCTAGGTCTATAAATGTGGCAGGAAGCATAAAT
TGTTGTTGCTTTGACAAGATTTTAAAGTACTCCATTTTACGCGAGCGGAG
AGAGAGAGCAATTTTGGCCGTCACCAAAAAAGTGTCTGCAGCAAGCTTTC
TAGACCAT

BO05469.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32000-RD 1977 CG32000-PD 1..1974 17..1990 9870 100 Plus
CG32000-RH 4356 CG32000-PH 1..1903 17..1919 9515 100 Plus
CG32000-RE 1788 CG32000-PE 1..1785 206..1990 8925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32000-RD 3219 CG32000-RD 1056..3029 17..1990 9870 100 Plus
CG32000-RH 5743 CG32000-RH 1060..2962 17..1919 9515 100 Plus
CG32000-RE 2262 CG32000-RE 239..2072 157..1990 9170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 137805..138310 1212..1717 2530 100 Plus
4 1348131 4 134529..134964 17..452 2180 100 Plus
4 1348131 4 137391..137752 852..1213 1810 100 Plus
4 1348131 4 136878..137168 452..742 1455 100 Plus
4 1348131 4 138374..138574 1718..1918 1005 100 Plus
4 1348131 4 137223..137332 742..851 550 100 Plus
4 1348131 4 139820..139893 1917..1990 370 100 Plus
2R 25286936 2R 4324087..4324129 1948..1990 185 95.3 Plus
Blast to na_te.dros performed 2014-11-27 15:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 3285..3356 1917..1990 202 80 Plus

BO05469.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:09 Download gff for BO05469.complete
Subject Subject Range Query Range Percent Splice Strand
CG32000-RD 1046..3025 8..1990 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:16 Download gff for BO05469.complete
Subject Subject Range Query Range Percent Splice Strand
CG32000-RD 1061..3029 22..1992 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:14 Download gff for BO05469.complete
Subject Subject Range Query Range Percent Splice Strand
CG32000-RD 1057..3025 22..1992 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:28 Download gff for BO05469.complete
Subject Subject Range Query Range Percent Splice Strand
CG32000-RD 1061..3029 22..1992 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:28 Download gff for BO05469.complete
Subject Subject Range Query Range Percent Splice Strand
4 134534..134964 22..452 100 -> Plus
4 136879..137167 453..741 100 -> Plus
4 137223..137332 742..851 100 -> Plus
4 137391..137752 852..1213 100 -> Plus
4 137807..138310 1214..1717 100 -> Plus
4 138374..138574 1718..1918 100 -> Plus
4 139822..139893 1919..1992 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:16 Download gff for BO05469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 155160..155590 22..452 100 -> Plus
arm_4 157505..157793 453..741 100 -> Plus
arm_4 157849..157958 742..851 100 -> Plus
arm_4 158017..158378 852..1213 100 -> Plus
arm_4 158433..158936 1214..1717 100 -> Plus
arm_4 159000..159200 1718..1918 100 -> Plus
arm_4 160448..160519 1919..1992 97   Plus

BO05469.pep Sequence

Translation from 16 to 2008

> BO05469.pep
MFASQSKACDSPSETVHLQSLPNHIEDLKFRNSDVETDDDLHFPGIAAKN
KILKLSWWHSPVDMHYVATESVQPKKSDKVPSNKIKKVENNNTLVNGCSK
TSARSVPLLKYNRPDQDGDSEENITSVLEPNVDEIYSKDSERLVDDSKPC
IGLLNPDQEDQMKVCGYRRSLMRTGFCWACIFLTGGLLRLVLHWWRHLYL
YATCSQCSLEEAEQVLVTEDYQGKHKMYHVKQIQVLTSSNLKTLLEKEQQ
SIERTHIECDHVENVLQLSVHFTSAQFKKCSSIRIFRCKQLVYAWNNNTN
RFQRINGLDLNIPCSYYHQQRGLPVHEQISRRIVFGDNEITVPLRDFKTL
LFLEVLNPFYVFQLFSVILWFTYDYYYYACVILLMSVFGITVSVLQTKKN
QDVLQKTVYNTGNAWVVDHKGLSKELPTRAIVPGDIIEIPSSGCTLHCDA
ILISGNCILDESMLTGESVPVTKTPLPSKRDMIFDKTEHARHTLFCGTKV
IQTRYIGSKKVLAFVINTGNITAKGELIRSILYPPPVDYKFEQDSYKFIQ
FLAIIACVGFIYTLVTKILRGTDPVKIAVESLDLITIVVPPALPAAMTVG
RFYAQKRLKTSEIFCISPRSINVAGSINCCCFDKILKYSILRERRERAIL
AVTKKVSAASFLDH

BO05469.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32000-PD 658 CG32000-PD 1..658 1..658 3459 100 Plus
CG32000-PH 1451 CG32000-PH 1..634 1..634 3350 100 Plus
CG32000-PE 595 CG32000-PE 1..595 64..658 3118 100 Plus
CG32000-PG 1388 CG32000-PG 1..571 64..634 3009 100 Plus
CG32000-PF 521 CG32000-PF 9..521 146..658 2697 100 Plus