BO05471.3prime Sequence
962 bp (819 high quality bases) assembled on 2005-12-02
> BO05471.3prime
ATGGTCTAGAAAGCTGCCTGTTGGAAAATATTAGAGTTATCCCATTCGAG
TTGATTGATGTGAGTGAATCCGTCCTTTAAAGCTTCTTCATCTTCAGATT
CAGAATTTTCTGATTCAGAACTCGCGTCCGATGTAACATCTGCTTGCATG
GGATTTATAGTTATAGTCAAAGCTGAGTCATCCCAAATTAAACCATCATC
AGAAATTTTTGGACATGGTTGATGGTGTTCAATATATTTTTGGTTGTTTT
TTAAACGTGCAATCGAGACTCCACAAAGTAAGACCGCCAAAAAAACACTT
ACAAGAATTATAAGCATTGTAACATGTGACCCTTCAGCTTTGTGTATGAA
AGAATGAATGTGAGATTTTGGTTCTTGCACATTATTGGTATGCAGAAGGG
AATATGAATATACCTTAGACTCTGTTGGCTGATTATTATCATTGCCATTT
ACCGAACCACTATTCCGGTGAAATGATGTTTCATTATCGGTGTTGCCAAT
AAAGTTTACTTTAGATAACGATGAAGGGAGTACATTTGTAGACTTAAACA
ATGTCTGTTTAGGATGCAACACAGTAAGTGTTAGTGTATATTCACCGCTT
TTGTACTGGGAACTTTGTTGGGCACAAGAAAGCTTAAATACACGGTTAAG
ATAATATGCAGGTTTTTTGTTACTGTATACAAGAGATCGTAATACATTTA
TATAATTGCTAATGGTATCCTTTCCAATCATTTCGACTCCATCCTTATTA
ATATTAGTCTTAATGTCCATGCTAGATGACAATGACTCGTCACCATCTAT
TTTAATGTCTTCATGATCGGGATTTTCAAAGAGGGAATACACGACGCTGC
ATGAGTCGATATGATTTTTCTCTTTCTATTTTTCATTGTTTTTAGATACC
GAGTCAATGCAAGTTTTTTCCAAAATGTGTACGCCCAATTTAATTTCTTG
ATATGATACAAG
BO05471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11059-PA | 2937 | cals-RA | 2128..2934 | 824..18 | 4035 | 100 | Minus |
| CG11059-PB | 2937 | cals-RB | 2128..2934 | 824..18 | 4035 | 100 | Minus |
| CG11059-PA | 2937 | cals-RA | 1990..2074 | 962..878 | 400 | 98.8 | Minus |
| CG11059-PB | 2937 | cals-RB | 1990..2074 | 962..878 | 400 | 98.8 | Minus |
| CG11059-PA | 2937 | cals-RA | 2078..2111 | 874..841 | 170 | 100 | Minus |
| CG11059-PB | 2937 | cals-RB | 2078..2111 | 874..841 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cals-RD | 6077 | CG11059-RD | 2177..3121 | 962..18 | 4585 | 99.3 | Minus |
| Cals-RB | 3872 | CG11059-RB | 2177..3121 | 962..18 | 4585 | 99.3 | Minus |
| Cals-RA | 3693 | CG11059-RA | 2174..3118 | 962..18 | 4585 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1116660..1117200 | 422..962 | 2490 | 98.5 | Plus |
| 4 | 1348131 | 4 | 1116326..1116458 | 207..339 | 665 | 100 | Plus |
| 4 | 1348131 | 4 | 1115956..1116079 | 83..206 | 620 | 100 | Plus |
| 4 | 1348131 | 4 | 1116515..1116600 | 338..423 | 430 | 100 | Plus |
| 4 | 1348131 | 4 | 1115830..1115896 | 18..84 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:42:14 has no hits.
BO05471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:22:59 Download gff for
BO05471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cals-PA | 1990..2937 | 15..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:06 Download gff for
BO05471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11059-PB | 1990..2937 | 15..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:01 Download gff for
BO05471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cals-RA | 2174..3118 | 18..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:45 Download gff for
BO05471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cals-RA | 2174..3118 | 18..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:45 Download gff for
BO05471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1116515..1116598 | 338..421 | 100 | <- | Plus |
| 4 | 1115956..1116079 | 83..206 | 100 | <- | Plus |
| 4 | 1116326..1116456 | 207..337 | 100 | <- | Plus |
| 4 | 1115830..1115894 | 18..82 | 100 | <- | Plus |
| 4 | 1116660..1117200 | 422..962 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:01 Download gff for
BO05471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1136456..1136520 | 18..82 | 100 | <- | Plus |
| arm_4 | 1136582..1136705 | 83..206 | 100 | <- | Plus |
| arm_4 | 1136952..1137082 | 207..337 | 100 | <- | Plus |
| arm_4 | 1137141..1137224 | 338..421 | 100 | <- | Plus |
| arm_4 | 1137286..1137826 | 422..962 | 98 | | Plus |
BO05471.5prime Sequence
883 bp (848 high quality bases) assembled on 2005-12-02
> BO05471.5prime
GAAGTTATCAGTCGACATGACGTTTCACAAAACCTTTGGTTACGGATGCA
TTGTATTAATATGTTTTGAACTCCTGTTTGCTGGAGTTGAAACGTCCAGC
GAAAATGATGATGAATATTTAACACAGAAAGAAATCATATTAGAAAAGTC
ATATCACGGTTTAATTCGAGAAAATGAAACACTTGTAGAAATAACTCCCC
TTATTAAAGTGAACGAAGAGAAAATTTGTAACTTCCATATTCTCAAAAAA
CCGTATCACGAAATTCCATTTAAGATTGAACTGGTAAATAACCTAGGTAT
TTTAAAAGCACGTCGGACACTAAATTGCGAGAATCGTAAAAGTTATCACT
TTGAAATCTGTGCAATCTATTGTGATGGAACACCTTCAAATACAGCCAAT
GTTCATATTACTGTTATCGACGTAAATGAGTATGCTCCAACATTCTTAGA
ACCGTCTTACGTAATTGAAGTAGACGAGGGAAGACTTTATAACGAGATCC
TAAGAGTCGAAGCTTCCGATAAAGACTGCACTCCGCTCTTTGGTGATGTT
TGCAAATATGAGATTCTTAACAATGATGAACCATTTTCAATAGATAACGA
AGGTTCAATTAAAAACACTGAACCACTTTCTCACAAAGCTTCTCATAACC
ACATTCTGTCCGTGGTTGCCTATGATTGTGCAATGAAAGAATCTGCACCC
ATTATGGTCAGCATTAAAGTTCGACGCGTTTGTGAAACAAAGTTTGTAGG
CATGCCAGAACGCATTGACTACACGTCTGGAAGCACCGAAAGCCTTCAAT
TGTTTCCCAATGCTCGCCTAGACTTATGTGACATTTCTTGCAAAAATGAA
GAAGACCTTAGGATTCATTCTTCCATAGCCCTT
BO05471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11059-PA | 2937 | cals-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
| CG11059-PB | 2937 | cals-RB | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cals-RD | 6077 | CG11059-RD | 187..1054 | 16..883 | 4340 | 100 | Plus |
| Cals-RC | 3696 | CG11059-RC | 184..1051 | 16..883 | 4340 | 100 | Plus |
| Cals-RB | 3872 | CG11059-RB | 187..1054 | 16..883 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1120106..1120613 | 775..268 | 2525 | 99.8 | Minus |
| 4 | 1348131 | 4 | 1120659..1120803 | 274..130 | 725 | 100 | Minus |
| 4 | 1348131 | 4 | 1121459..1121574 | 131..16 | 580 | 100 | Minus |
| 4 | 1348131 | 4 | 1119940..1120048 | 883..775 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:40:32 has no hits.
BO05471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:00 Download gff for
BO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cals-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:07 Download gff for
BO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11059-PB | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:24 Download gff for
BO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cals-RA | 177..1051 | 7..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:13 Download gff for
BO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cals-RB | 180..1054 | 7..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:13 Download gff for
BO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1119940..1120047 | 776..883 | 100 | <- | Minus |
| 4 | 1120106..1120606 | 275..775 | 100 | <- | Minus |
| 4 | 1120659..1120801 | 132..274 | 100 | <- | Minus |
| 4 | 1121459..1121581 | 7..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:24 Download gff for
BO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1140566..1140673 | 776..883 | 100 | <- | Minus |
| arm_4 | 1140732..1141232 | 275..775 | 100 | <- | Minus |
| arm_4 | 1142085..1142207 | 7..131 | 96 | | Minus |
| arm_4 | 1141285..1141427 | 132..274 | 100 | <- | Minus |
