Clone BO05472 Report

Search the DGRC for BO05472

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptGad1-RA
Protein status:BO05472.pep: validated full length
Sequenced Size:1564

Clone Sequence Records

BO05472.3prime Sequence

912 bp (799 high quality bases) assembled on 2005-12-02

> BO05472.3prime
ATGGTCTAGAAAGCTTGCCAAGTCGTCGCCCAGGCGATGGATCTCGTCCA
GCATAAAGTCCACATCCGCCTCGTTGACCGCCGCCGACGAGATAATCGAG
CGGAAGAAGTTGGGCCGGCGATCGTCGGGCTGGTAGCCCACCATCAGCGT
TCCCTTCTGCATCATGCGGCCCTTGATGATGGGGCAGATCTTTCCCAGCT
CCACCTCCTTCTTGGCATCGTGTGGCACTCCTCTCAGTCGCTTGGGCACA
TACCAGAAGGAGACGTTGACGCACTCCGGTTCAAGGATCAGATGGAAGCG
GTCGGACTGCTCGCGAATGCGCTTCAACTGGTACTGGACCAGCTCCATGA
GCCGGTCCTGCTGCTGCTCGAAGCCCTCGGTGCCCTTGGCCCGCCACTGG
AGCCACAGCTTGAAGATGTCGTTGTGGCGGCCGCACTGGATCACCTTGTC
GCCGGTGTCGTAGCTAATGTCATACTGCTTGTCGGTCATGAAGAGATACT
CCGCCGACATCTGATTGCAGCTGATGAGCAGGCCATCCTCCTTGAAATGG
ATCGTGGAGCACTGGAGCAGGGCTCCCATGAGCTTGTGGGGATTCCAGGT
GACCGAATCGGCACGCTCAACACCAGTAAATCTGGGATGACGATGCTTAC
GCGACATCAACAATCCACCGCCCCAAGCAGCATCGATGTGCATCCAGCAG
TTGTACTTCTGGCAGATATCCGCAATCGTGTTGATATCATCGAAGGCACC
CAGCACAGTGGTGCCGGCAGTGGCGTTCACAAAGAATGGAATGTCACCCT
TGGCCTTGCGCTCCAGGATCAGGCGCTCCAGCTCCGAGGTGATCATCTTG
GCGTGCTCATCCGATGGCACCACAATGCAGTGATCGGTGCCCAGTCCACA
AACGGCAGCGCA

BO05472.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14994-PB 1533 Gad1-RB 637..1530 912..19 4445 99.8 Minus
CG14994-PA 1533 Gad1-RA 637..1530 912..19 4445 99.8 Minus
CG14994-PC 1533 Gad1-RC 637..1530 912..19 4445 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Gad1-RD 3017 CG14994-RD 833..1726 912..19 4455 99.9 Minus
Gad1-RC 3151 CG14994-RC 967..1860 912..19 4455 99.9 Minus
Gad1-RA 3050 CG14994-RA 866..1759 912..19 4455 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4075596..4075940 190..534 1725 100 Plus
3L 28110227 3L 4078925..4079156 681..912 1145 99.6 Plus
3L 28110227 3L 4075368..4075540 19..191 865 100 Plus
3L 28110227 3L 4076798..4076878 534..614 405 100 Plus
3L 28110227 3L 4078750..4078817 614..681 340 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:14:00 has no hits.

BO05472.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:01 Download gff for BO05472.3prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-PB 638..1533 15..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:08 Download gff for BO05472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14994-PC 638..1533 15..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:48 Download gff for BO05472.3prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 867..1763 14..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:33 Download gff for BO05472.3prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 867..1763 14..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:33 Download gff for BO05472.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4075364..4075538 14..189 98 <- Plus
3L 4075596..4075940 190..534 100 <- Plus
3L 4076799..4076877 535..613 100 <- Plus
3L 4078750..4078817 614..681 100 <- Plus
3L 4078926..4079155 682..911 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:48 Download gff for BO05472.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4075364..4075538 14..189 98 <- Plus
arm_3L 4075596..4075940 190..534 100 <- Plus
arm_3L 4076799..4076877 535..613 100 <- Plus
arm_3L 4078750..4078817 614..681 100 <- Plus
arm_3L 4078926..4079155 682..911 99   Plus

BO05472.5prime Sequence

914 bp (852 high quality bases) assembled on 2005-11-29

> BO05472.5prime
GAAGTTATCAGTCGACATGTCGCTGAATCCCAACGGGTATAAACTGTCCG
AGAGGACGGGCAAACTGACGGCATATGATCTCATGCCCACAACAGTGACC
GCTGGACCGGAGACACGGGAGTTCCTGCTGAAGGTAATCGATGTGCTGCT
GGACTTTGTGAAGGCCACCAACGACCGGAACGAGAAGGTTCTGGACTTCC
ACCATCCCGAGGACATGAAGCGGCTGCTCGATCTGGATGTGCCCGATCGC
GCCTTGCCACTGCAGCAGCTCATCGAGGACTGTGCCACCACATTGAAGTA
CCAAGTTAAGACGGGACATCCCCACTTCTTCAATCAGCTGTCCAACGGTC
TGGACCTGATCTCCATGGCGGGTGAGTGGCTGACGGCCACTGCGAACACC
AACATGTTCACCTACGAGATTGCACCAGTTTTCATTCTCATGGAGAATGT
GGTGCTGACCAAGATGCGTGAGATCATTGGCTGGTCGGGTGGCGATTCCA
TTTTGGCACCCGGAGGTTCCATCTCCAATCTGTATGCCTTCCTGGCAGCT
CGTCACAAGATGTTCCCGAACTACAAGGAGCACGGCTCGGTGGGATTGCC
CGGCACACTGGTGATGTTCACCTCGGATCAGTGCCATTACTCGATCAAAT
CATGCGCTGCCGTTTGTGGACTGGGCACCGATCACTGCATTGTGGTGCCA
TCGGATGAGCACGGCAAGATGATCACCTCGGAGCTGGAGCGCCTGATCCT
GGAGCGCAAGGCCAAGGGTGACATTCCATTCTTTGTGAACGCCACTGCCG
GCACCACTGTGCTGGGTGCCTTCGATGATATCAACACGATTGCGGATATC
TGCCAGAAGTACAACTGCTGGATGCACATCGATGCTGCTTGGGGGCGGTG
GATTGTTGATGTCG

BO05472.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14994-PB 1533 Gad1-RB 1..878 17..894 4390 100 Plus
CG14994-PA 1533 Gad1-RA 1..878 17..894 4390 100 Plus
CG14994-PC 1533 Gad1-RC 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gad1-RD 3017 CG14994-RD 197..1093 17..914 4465 99.9 Plus
Gad1-RC 3151 CG14994-RC 331..1227 17..914 4465 99.9 Plus
Gad1-RA 3050 CG14994-RA 230..1126 17..914 4465 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4078925..4079495 884..314 2855 100 Minus
3L 28110227 3L 4082402..4082640 315..77 1195 100 Minus
3L 28110227 3L 4084730..4084790 77..17 305 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:42:00 has no hits.

BO05472.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:02 Download gff for BO05472.5prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-PB 1..897 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:10 Download gff for BO05472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14994-PC 1..897 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:54 Download gff for BO05472.5prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 222..1126 10..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:14 Download gff for BO05472.5prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 222..1126 10..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:14 Download gff for BO05472.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4078788..4078817 884..914 96 <- Minus
3L 4078926..4079494 315..883 100 <- Minus
3L 4082403..4082639 78..314 100 <- Minus
3L 4084730..4084795 10..77 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:54 Download gff for BO05472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4082403..4082639 78..314 100 <- Minus
arm_3L 4084730..4084795 10..77 94   Minus
arm_3L 4078788..4078817 884..914 96 <- Minus
arm_3L 4078926..4079494 315..883 100 <- Minus

BO05472.complete Sequence

1564 bp (1564 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630054

> BO05472.complete
GAAGTTATCAGTCGACATGTCGCTGAATCCCAACGGGTATAAACTGTCCG
AGAGGACGGGCAAACTGACGGCATATGATCTCATGCCCACAACAGTGACC
GCTGGACCGGAGACACGGGAGTTCCTGCTGAAGGTAATCGATGTGCTGCT
GGACTTTGTGAAGGCCACCAACGACCGGAACGAGAAGGTTCTGGACTTCC
ACCATCCCGAGGACATGAAGCGGCTGCTCGATCTGGATGTGCCCGATCGC
GCCTTGCCACTGCAGCAGCTCATCGAGGACTGTGCCACCACATTGAAGTA
CCAAGTTAAGACGGGACATCCCCACTTCTTCAATCAGCTGTCCAACGGTC
TGGACCTGATCTCCATGGCGGGTGAGTGGCTGACGGCCACTGCGAACACC
AACATGTTCACCTACGAGATTGCACCAGTTTTCATTCTCATGGAGAATGT
GGTGCTGACCAAGATGCGTGAGATCATTGGCTGGTCGGGTGGCGATTCCA
TTTTGGCACCCGGAGGTTCCATCTCCAATCTGTATGCCTTCCTGGCAGCT
CGTCACAAGATGTTCCCGAACTACAAGGAGCACGGCTCGGTGGGATTGCC
CGGCACACTGGTGATGTTCACCTCGGATCAGTGCCATTACTCGATCAAAT
CATGCGCTGCCGTTTGTGGACTGGGCACCGATCACTGCATTGTGGTGCCA
TCGGATGAGCACGGCAAGATGATCACCTCGGAGCTGGAGCGCCTGATCCT
GGAGCGCAAGGCCAAGGGTGACATTCCATTCTTTGTGAACGCCACTGCCG
GCACCACTGTGCTGGGTGCCTTCGATGATATCAACACGATTGCGGATATC
TGCCAGAAGTACAACTGCTGGATGCACATCGATGCTGCTTGGGGCGGTGG
ATTGTTGATGTCGCGTAAGCATCGTCATCCCAGATTTACTGGTGTTGAGC
GTGCCGATTCGGTCACCTGGAATCCCCACAAGCTCATGGGAGCCCTGCTC
CAGTGCTCCACGATCCATTTCAAGGAGGATGGCCTGCTCATCAGCTGCAA
TCAGATGTCGGCGGAGTATCTCTTCATGACCGACAAGCAGTATGACATTA
GCTACGACACCGGCGACAAGGTGATCCAGTGCGGCCGCCACAACGACATC
TTCAAGCTGTGGCTCCAGTGGCGGGCCAAGGGCACCGAGGGCTTCGAGCA
GCAGCAGGACCGGCTCATGGAGCTGGTCCAGTACCAGTTGAAGCGCATTC
GCGAGCAGTCCGACCGCTTCCATCTGATCCTTGAACCGGAGTGCGTCAAC
GTCTCCTTCTGGTATGTGCCCAAGCGACTGAGAGGAGTGCCACACGATGC
CAAGAAGGAGGTGGAGCTGGGAAAGATCTGCCCCATCATCAAGGGCCGCA
TGATGCAGAAGGGAACGCTGATGGTGGGCTACCAGCCCGACGATCGCCGG
CCCAACTTCTTCCGCTCGATTATCTCGTCGGCGGCGGTCAACGAGGCGGA
TGTGGACTTTATGCTGGACGAGATCCATCGCCTGGGCGACGACTTGGCAA
GCTTTCTAGACCAT

BO05472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Gad1-RD 1533 CG14994-PD 1..1530 17..1546 7650 100 Plus
Gad1-RC 1533 CG14994-PC 1..1530 17..1546 7650 100 Plus
Gad1-RA 1533 CG14994-PA 1..1530 17..1546 7650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Gad1-RD 3017 CG14994-RD 197..1726 17..1546 7650 100 Plus
Gad1-RC 3151 CG14994-RC 331..1860 17..1546 7650 100 Plus
Gad1-RA 3050 CG14994-RA 230..1759 17..1546 7650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4078925..4079495 884..314 2855 100 Minus
3L 28110227 3L 4075596..4075940 1375..1031 1725 100 Minus
3L 28110227 3L 4082402..4082640 315..77 1195 100 Minus
3L 28110227 3L 4075368..4075540 1546..1374 865 100 Minus
3L 28110227 3L 4076798..4076878 1031..951 405 100 Minus
3L 28110227 3L 4078750..4078817 951..884 340 100 Minus
3L 28110227 3L 4084730..4084790 77..17 305 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:33:37 has no hits.

BO05472.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:43 Download gff for BO05472.complete
Subject Subject Range Query Range Percent Splice Strand
Gad1-RC 1..1533 17..1550 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:01 Download gff for BO05472.complete
Subject Subject Range Query Range Percent Splice Strand
Gad1-RC 307..1848 10..1551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:00 Download gff for BO05472.complete
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 230..1759 17..1548 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:43 Download gff for BO05472.complete
Subject Subject Range Query Range Percent Splice Strand
Gad1-RC 307..1848 10..1551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:15 Download gff for BO05472.complete
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 230..1759 17..1548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:15 Download gff for BO05472.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4075596..4075940 1031..1375 100 <- Minus
3L 4076799..4076877 952..1030 100 <- Minus
3L 4078750..4078817 884..951 100 <- Minus
3L 4075366..4075538 1376..1548 98 <- Minus
3L 4078926..4079494 315..883 100 <- Minus
3L 4082403..4082639 78..314 100 <- Minus
3L 4084730..4084790 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:00 Download gff for BO05472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4075366..4075538 1376..1548 98 <- Minus
arm_3L 4075596..4075940 1031..1375 100 <- Minus
arm_3L 4076799..4076877 952..1030 100 <- Minus
arm_3L 4078750..4078817 884..951 100 <- Minus
arm_3L 4078926..4079494 315..883 100 <- Minus
arm_3L 4082403..4082639 78..314 100 <- Minus
arm_3L 4084730..4084790 17..77 100   Minus

BO05472.pep Sequence

Translation from 16 to 1564

> BO05472.pep
MSLNPNGYKLSERTGKLTAYDLMPTTVTAGPETREFLLKVIDVLLDFVKA
TNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQVKTG
HPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKM
REIIGWSGGDSILAPGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVM
FTSDQCHYSIKSCAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAK
GDIPFFVNATAGTTVLGAFDDINTIADICQKYNCWMHIDAAWGGGLLMSR
KHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHFKEDGLLISCNQMSAE
YLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQQDRL
MELVQYQLKRIREQSDRFHLILEPECVNVSFWYVPKRLRGVPHDAKKEVE
LGKICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFML
DEIHRLGDDLASFLDH

BO05472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Gad1-PD 510 CG14994-PD 1..510 1..510 2718 100 Plus
Gad1-PC 510 CG14994-PC 1..510 1..510 2718 100 Plus
Gad1-PA 510 CG14994-PA 1..510 1..510 2718 100 Plus
Gad1-PB 510 CG14994-PB 1..510 1..510 2718 100 Plus
b-PC 514 CG7811-PC 34..514 32..510 1097 43.7 Plus