Clone Sequence Records
BO05472.3prime Sequence
912 bp (799 high quality bases) assembled on 2005-12-02
> BO05472.3prime
ATGGTCTAGAAAGCTTGCCAAGTCGTCGCCCAGGCGATGGATCTCGTCCA
GCATAAAGTCCACATCCGCCTCGTTGACCGCCGCCGACGAGATAATCGAG
CGGAAGAAGTTGGGCCGGCGATCGTCGGGCTGGTAGCCCACCATCAGCGT
TCCCTTCTGCATCATGCGGCCCTTGATGATGGGGCAGATCTTTCCCAGCT
CCACCTCCTTCTTGGCATCGTGTGGCACTCCTCTCAGTCGCTTGGGCACA
TACCAGAAGGAGACGTTGACGCACTCCGGTTCAAGGATCAGATGGAAGCG
GTCGGACTGCTCGCGAATGCGCTTCAACTGGTACTGGACCAGCTCCATGA
GCCGGTCCTGCTGCTGCTCGAAGCCCTCGGTGCCCTTGGCCCGCCACTGG
AGCCACAGCTTGAAGATGTCGTTGTGGCGGCCGCACTGGATCACCTTGTC
GCCGGTGTCGTAGCTAATGTCATACTGCTTGTCGGTCATGAAGAGATACT
CCGCCGACATCTGATTGCAGCTGATGAGCAGGCCATCCTCCTTGAAATGG
ATCGTGGAGCACTGGAGCAGGGCTCCCATGAGCTTGTGGGGATTCCAGGT
GACCGAATCGGCACGCTCAACACCAGTAAATCTGGGATGACGATGCTTAC
GCGACATCAACAATCCACCGCCCCAAGCAGCATCGATGTGCATCCAGCAG
TTGTACTTCTGGCAGATATCCGCAATCGTGTTGATATCATCGAAGGCACC
CAGCACAGTGGTGCCGGCAGTGGCGTTCACAAAGAATGGAATGTCACCCT
TGGCCTTGCGCTCCAGGATCAGGCGCTCCAGCTCCGAGGTGATCATCTTG
GCGTGCTCATCCGATGGCACCACAATGCAGTGATCGGTGCCCAGTCCACA
AACGGCAGCGCA
BO05472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14994-PB | 1533 | Gad1-RB | 637..1530 | 912..19 | 4445 | 99.8 | Minus |
CG14994-PA | 1533 | Gad1-RA | 637..1530 | 912..19 | 4445 | 99.8 | Minus |
CG14994-PC | 1533 | Gad1-RC | 637..1530 | 912..19 | 4445 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gad1-RD | 3017 | CG14994-RD | 833..1726 | 912..19 | 4455 | 99.9 | Minus |
Gad1-RC | 3151 | CG14994-RC | 967..1860 | 912..19 | 4455 | 99.9 | Minus |
Gad1-RA | 3050 | CG14994-RA | 866..1759 | 912..19 | 4455 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4075596..4075940 | 190..534 | 1725 | 100 | Plus |
3L | 28110227 | 3L | 4078925..4079156 | 681..912 | 1145 | 99.6 | Plus |
3L | 28110227 | 3L | 4075368..4075540 | 19..191 | 865 | 100 | Plus |
3L | 28110227 | 3L | 4076798..4076878 | 534..614 | 405 | 100 | Plus |
3L | 28110227 | 3L | 4078750..4078817 | 614..681 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:14:00 has no hits.
BO05472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:01 Download gff for
BO05472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-PB | 638..1533 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:08 Download gff for
BO05472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14994-PC | 638..1533 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:48 Download gff for
BO05472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 867..1763 | 14..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:33 Download gff for
BO05472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 867..1763 | 14..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:33 Download gff for
BO05472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4075364..4075538 | 14..189 | 98 | <- | Plus |
3L | 4075596..4075940 | 190..534 | 100 | <- | Plus |
3L | 4076799..4076877 | 535..613 | 100 | <- | Plus |
3L | 4078750..4078817 | 614..681 | 100 | <- | Plus |
3L | 4078926..4079155 | 682..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:48 Download gff for
BO05472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4075364..4075538 | 14..189 | 98 | <- | Plus |
arm_3L | 4075596..4075940 | 190..534 | 100 | <- | Plus |
arm_3L | 4076799..4076877 | 535..613 | 100 | <- | Plus |
arm_3L | 4078750..4078817 | 614..681 | 100 | <- | Plus |
arm_3L | 4078926..4079155 | 682..911 | 99 | | Plus |
BO05472.5prime Sequence
914 bp (852 high quality bases) assembled on 2005-11-29
> BO05472.5prime
GAAGTTATCAGTCGACATGTCGCTGAATCCCAACGGGTATAAACTGTCCG
AGAGGACGGGCAAACTGACGGCATATGATCTCATGCCCACAACAGTGACC
GCTGGACCGGAGACACGGGAGTTCCTGCTGAAGGTAATCGATGTGCTGCT
GGACTTTGTGAAGGCCACCAACGACCGGAACGAGAAGGTTCTGGACTTCC
ACCATCCCGAGGACATGAAGCGGCTGCTCGATCTGGATGTGCCCGATCGC
GCCTTGCCACTGCAGCAGCTCATCGAGGACTGTGCCACCACATTGAAGTA
CCAAGTTAAGACGGGACATCCCCACTTCTTCAATCAGCTGTCCAACGGTC
TGGACCTGATCTCCATGGCGGGTGAGTGGCTGACGGCCACTGCGAACACC
AACATGTTCACCTACGAGATTGCACCAGTTTTCATTCTCATGGAGAATGT
GGTGCTGACCAAGATGCGTGAGATCATTGGCTGGTCGGGTGGCGATTCCA
TTTTGGCACCCGGAGGTTCCATCTCCAATCTGTATGCCTTCCTGGCAGCT
CGTCACAAGATGTTCCCGAACTACAAGGAGCACGGCTCGGTGGGATTGCC
CGGCACACTGGTGATGTTCACCTCGGATCAGTGCCATTACTCGATCAAAT
CATGCGCTGCCGTTTGTGGACTGGGCACCGATCACTGCATTGTGGTGCCA
TCGGATGAGCACGGCAAGATGATCACCTCGGAGCTGGAGCGCCTGATCCT
GGAGCGCAAGGCCAAGGGTGACATTCCATTCTTTGTGAACGCCACTGCCG
GCACCACTGTGCTGGGTGCCTTCGATGATATCAACACGATTGCGGATATC
TGCCAGAAGTACAACTGCTGGATGCACATCGATGCTGCTTGGGGGCGGTG
GATTGTTGATGTCG
BO05472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14994-PB | 1533 | Gad1-RB | 1..878 | 17..894 | 4390 | 100 | Plus |
CG14994-PA | 1533 | Gad1-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
CG14994-PC | 1533 | Gad1-RC | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gad1-RD | 3017 | CG14994-RD | 197..1093 | 17..914 | 4465 | 99.9 | Plus |
Gad1-RC | 3151 | CG14994-RC | 331..1227 | 17..914 | 4465 | 99.9 | Plus |
Gad1-RA | 3050 | CG14994-RA | 230..1126 | 17..914 | 4465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4078925..4079495 | 884..314 | 2855 | 100 | Minus |
3L | 28110227 | 3L | 4082402..4082640 | 315..77 | 1195 | 100 | Minus |
3L | 28110227 | 3L | 4084730..4084790 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:42:00 has no hits.
BO05472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:02 Download gff for
BO05472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-PB | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:10 Download gff for
BO05472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14994-PC | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:54 Download gff for
BO05472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 222..1126 | 10..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:14 Download gff for
BO05472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 222..1126 | 10..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:14 Download gff for
BO05472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4078788..4078817 | 884..914 | 96 | <- | Minus |
3L | 4078926..4079494 | 315..883 | 100 | <- | Minus |
3L | 4082403..4082639 | 78..314 | 100 | <- | Minus |
3L | 4084730..4084795 | 10..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:54 Download gff for
BO05472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4082403..4082639 | 78..314 | 100 | <- | Minus |
arm_3L | 4084730..4084795 | 10..77 | 94 | | Minus |
arm_3L | 4078788..4078817 | 884..914 | 96 | <- | Minus |
arm_3L | 4078926..4079494 | 315..883 | 100 | <- | Minus |
BO05472.complete Sequence
1564 bp (1564 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630054
> BO05472.complete
GAAGTTATCAGTCGACATGTCGCTGAATCCCAACGGGTATAAACTGTCCG
AGAGGACGGGCAAACTGACGGCATATGATCTCATGCCCACAACAGTGACC
GCTGGACCGGAGACACGGGAGTTCCTGCTGAAGGTAATCGATGTGCTGCT
GGACTTTGTGAAGGCCACCAACGACCGGAACGAGAAGGTTCTGGACTTCC
ACCATCCCGAGGACATGAAGCGGCTGCTCGATCTGGATGTGCCCGATCGC
GCCTTGCCACTGCAGCAGCTCATCGAGGACTGTGCCACCACATTGAAGTA
CCAAGTTAAGACGGGACATCCCCACTTCTTCAATCAGCTGTCCAACGGTC
TGGACCTGATCTCCATGGCGGGTGAGTGGCTGACGGCCACTGCGAACACC
AACATGTTCACCTACGAGATTGCACCAGTTTTCATTCTCATGGAGAATGT
GGTGCTGACCAAGATGCGTGAGATCATTGGCTGGTCGGGTGGCGATTCCA
TTTTGGCACCCGGAGGTTCCATCTCCAATCTGTATGCCTTCCTGGCAGCT
CGTCACAAGATGTTCCCGAACTACAAGGAGCACGGCTCGGTGGGATTGCC
CGGCACACTGGTGATGTTCACCTCGGATCAGTGCCATTACTCGATCAAAT
CATGCGCTGCCGTTTGTGGACTGGGCACCGATCACTGCATTGTGGTGCCA
TCGGATGAGCACGGCAAGATGATCACCTCGGAGCTGGAGCGCCTGATCCT
GGAGCGCAAGGCCAAGGGTGACATTCCATTCTTTGTGAACGCCACTGCCG
GCACCACTGTGCTGGGTGCCTTCGATGATATCAACACGATTGCGGATATC
TGCCAGAAGTACAACTGCTGGATGCACATCGATGCTGCTTGGGGCGGTGG
ATTGTTGATGTCGCGTAAGCATCGTCATCCCAGATTTACTGGTGTTGAGC
GTGCCGATTCGGTCACCTGGAATCCCCACAAGCTCATGGGAGCCCTGCTC
CAGTGCTCCACGATCCATTTCAAGGAGGATGGCCTGCTCATCAGCTGCAA
TCAGATGTCGGCGGAGTATCTCTTCATGACCGACAAGCAGTATGACATTA
GCTACGACACCGGCGACAAGGTGATCCAGTGCGGCCGCCACAACGACATC
TTCAAGCTGTGGCTCCAGTGGCGGGCCAAGGGCACCGAGGGCTTCGAGCA
GCAGCAGGACCGGCTCATGGAGCTGGTCCAGTACCAGTTGAAGCGCATTC
GCGAGCAGTCCGACCGCTTCCATCTGATCCTTGAACCGGAGTGCGTCAAC
GTCTCCTTCTGGTATGTGCCCAAGCGACTGAGAGGAGTGCCACACGATGC
CAAGAAGGAGGTGGAGCTGGGAAAGATCTGCCCCATCATCAAGGGCCGCA
TGATGCAGAAGGGAACGCTGATGGTGGGCTACCAGCCCGACGATCGCCGG
CCCAACTTCTTCCGCTCGATTATCTCGTCGGCGGCGGTCAACGAGGCGGA
TGTGGACTTTATGCTGGACGAGATCCATCGCCTGGGCGACGACTTGGCAA
GCTTTCTAGACCAT
BO05472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gad1-RD | 1533 | CG14994-PD | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Gad1-RC | 1533 | CG14994-PC | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Gad1-RA | 1533 | CG14994-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gad1-RD | 3017 | CG14994-RD | 197..1726 | 17..1546 | 7650 | 100 | Plus |
Gad1-RC | 3151 | CG14994-RC | 331..1860 | 17..1546 | 7650 | 100 | Plus |
Gad1-RA | 3050 | CG14994-RA | 230..1759 | 17..1546 | 7650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4078925..4079495 | 884..314 | 2855 | 100 | Minus |
3L | 28110227 | 3L | 4075596..4075940 | 1375..1031 | 1725 | 100 | Minus |
3L | 28110227 | 3L | 4082402..4082640 | 315..77 | 1195 | 100 | Minus |
3L | 28110227 | 3L | 4075368..4075540 | 1546..1374 | 865 | 100 | Minus |
3L | 28110227 | 3L | 4076798..4076878 | 1031..951 | 405 | 100 | Minus |
3L | 28110227 | 3L | 4078750..4078817 | 951..884 | 340 | 100 | Minus |
3L | 28110227 | 3L | 4084730..4084790 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:33:37 has no hits.
BO05472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:43 Download gff for
BO05472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RC | 1..1533 | 17..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:01 Download gff for
BO05472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RC | 307..1848 | 10..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:00 Download gff for
BO05472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 230..1759 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:43 Download gff for
BO05472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RC | 307..1848 | 10..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:15 Download gff for
BO05472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 230..1759 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:15 Download gff for
BO05472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4075596..4075940 | 1031..1375 | 100 | <- | Minus |
3L | 4076799..4076877 | 952..1030 | 100 | <- | Minus |
3L | 4078750..4078817 | 884..951 | 100 | <- | Minus |
3L | 4075366..4075538 | 1376..1548 | 98 | <- | Minus |
3L | 4078926..4079494 | 315..883 | 100 | <- | Minus |
3L | 4082403..4082639 | 78..314 | 100 | <- | Minus |
3L | 4084730..4084790 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:00 Download gff for
BO05472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4075366..4075538 | 1376..1548 | 98 | <- | Minus |
arm_3L | 4075596..4075940 | 1031..1375 | 100 | <- | Minus |
arm_3L | 4076799..4076877 | 952..1030 | 100 | <- | Minus |
arm_3L | 4078750..4078817 | 884..951 | 100 | <- | Minus |
arm_3L | 4078926..4079494 | 315..883 | 100 | <- | Minus |
arm_3L | 4082403..4082639 | 78..314 | 100 | <- | Minus |
arm_3L | 4084730..4084790 | 17..77 | 100 | | Minus |
BO05472.pep Sequence
Translation from 16 to 1564
> BO05472.pep
MSLNPNGYKLSERTGKLTAYDLMPTTVTAGPETREFLLKVIDVLLDFVKA
TNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQVKTG
HPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKM
REIIGWSGGDSILAPGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVM
FTSDQCHYSIKSCAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAK
GDIPFFVNATAGTTVLGAFDDINTIADICQKYNCWMHIDAAWGGGLLMSR
KHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHFKEDGLLISCNQMSAE
YLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQQDRL
MELVQYQLKRIREQSDRFHLILEPECVNVSFWYVPKRLRGVPHDAKKEVE
LGKICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFML
DEIHRLGDDLASFLDH
BO05472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gad1-PD | 510 | CG14994-PD | 1..510 | 1..510 | 2718 | 100 | Plus |
Gad1-PC | 510 | CG14994-PC | 1..510 | 1..510 | 2718 | 100 | Plus |
Gad1-PA | 510 | CG14994-PA | 1..510 | 1..510 | 2718 | 100 | Plus |
Gad1-PB | 510 | CG14994-PB | 1..510 | 1..510 | 2718 | 100 | Plus |
b-PC | 514 | CG7811-PC | 34..514 | 32..510 | 1097 | 43.7 | Plus |