Clone BO05473 Report

Search the DGRC for BO05473

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:73
Vector:pDNR-Dual
Associated Gene/Transcriptine-RB
Protein status:BO05473.pep: Imported from assembly
Sequenced Size:2863

Clone Sequence Records

BO05473.3prime Sequence

872 bp (715 high quality bases) assembled on 2005-12-02

> BO05473.3prime
ATGGTCTAGAAAGCTTGCCTGGCCACATGGTCCTCCTGCCTCCGCATGTG
AGGGTGAGGCTTGCATGGCGTTGTAGCCGCACTTCTGGCCGAGATTGAGC
AGGTGTGGGTTGGTGGGCTTGTACACTGTGGCCATTTCCTGGGCCAGCAT
AAACTGCTCCTGCTCCGGATAGTCGTGTTCGCAGTGGTGTTCCCCGCAAA
TCTTGCACTCGTAGATGTTGGGTCTCAGCGTGTTCCGGATGCGTTCCCAA
AAGGTATCTCCACTGGAGCGCAGGAAGTTGATAACCGCATATCCAGGTAT
GCAGATCAGCGAGAATGAAGCGAACATCCAGCCTATTCCGTAGGCCCAGT
CCGGATAGGTATAGCGTCCATTGTGGTAGGTGGGCTCGTGGTAGTTGATC
AGACTCAATACCCAGATGGCAAAGAGGAGGCAGGGTCCCAGGACTAGCCA
GCAGGATCTGAGATAGAACGAAGGCGCCTTTCCGGTCATTTGCTTGACGT
TCTTCGACAGTCTTCCCGTGCCGTAGAACCAGGCAATGGCAATCATTTGA
CAGAAGGCCAGAAACATGATCGTCACGGAGGCGGCGTAGTGATCCATTAG
CTGGAAGTAGTAGATGCCACCCTGTATGATGTTGGGCATCCCGAAGAGAC
ATGAGATGACACAGACGAACAGGACCACGATTTCGTGATAGCCCAGGTGC
CGCTTGATCCACCGCGGAAAGCCATCCTGTATGGACGTGACCACAACCTC
CACAATGGCAAACTGCGAGTTCAGACCTAGGCAGAGCAGCATGAAGAAGA
ACATGACCGCCCAGAGCTGAGCGTACGGCATCTTAGCCATCGCCTGGGGA
TACACCACGAATATCATGCCCG

BO05473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15444-PC 2832 ine-RC 1976..2829 872..19 4270 100 Minus
CG15444-PD 2832 ine-RD 1976..2829 872..19 4270 100 Minus
CG15444-PB 2832 ine-RB 1976..2829 872..19 4270 100 Minus
CG15444-PA 1977 ine-RA 1121..1974 872..19 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
ine-RF 3436 CG15444-RF 2476..3329 872..19 4270 100 Minus
ine-RE 3458 CG15444-RE 2498..3351 872..19 4270 100 Minus
ine-RA 2272 CG15444-RA 1282..2135 872..19 4270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4468666..4469118 420..872 2265 100 Plus
2L 23513712 2L 4468137..4468361 19..243 1125 100 Plus
2L 23513712 2L 4468425..4468601 244..420 885 100 Plus
Blast to na_te.dros performed 2015-02-12 15:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 2134..2194 652..713 109 66.1 Plus

BO05473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:03 Download gff for BO05473.3prime
Subject Subject Range Query Range Percent Splice Strand
ine-PD 1976..2832 18..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:11 Download gff for BO05473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15444-PA 1121..1977 18..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:58 Download gff for BO05473.3prime
Subject Subject Range Query Range Percent Splice Strand
ine-RA 1282..2145 6..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:19 Download gff for BO05473.3prime
Subject Subject Range Query Range Percent Splice Strand
ine-RA 1282..2145 6..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:19 Download gff for BO05473.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4468127..4468361 6..243 97 <- Plus
2L 4468425..4468601 244..420 100 <- Plus
2L 4468667..4469118 421..872 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:58 Download gff for BO05473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4468127..4468361 6..243 97 <- Plus
arm_2L 4468425..4468601 244..420 100 <- Plus
arm_2L 4468667..4469118 421..872 100   Plus

BO05473.5prime Sequence

808 bp (806 high quality bases) assembled on 2005-12-02

> BO05473.5prime
GAAGTTATCAGTCGACATGGCGGAGAACAAAGACGTCAGCCAGGTGCTAA
ACACCACACCCGACCAGGTGGTCATCAATCGTGCCCCGCCCACCGGACTA
GCGCCCTTGAGGCACAGCCAACTCTCTGATAGCGGAGCGGAGAGCTGCTA
CGAGGGCGATGAGCAGGCACGGCTCATCCGGTCCTCATCGTCGCGGGCGC
ACAAGTTCATCATAATACCGGCCACGCCAGGAACACCGCCGGGAAGCGGT
GCGGTAGCAGGACCACTTCCCTTTCGCCAGACCAGCTCAACCACATCGCT
GGCGGCCATGGCAGCTGCGCTGCACAAACAGTCTCCACTGCGCCATACAT
CGGTGCGAACCAGGCCCAGTTCGGAGGTATTGCAACCGGGCCAGGTGCTC
GCCAATCAGCCAACGGCAGCTGTATCCACCTCCACGGTGACCTTCACCAT
TGACGACTGCAATGAAGAAGGCGATGCCATTCCTGCTGCAGCTTCAGTTC
CAGCTCCCGTGACCATGCCCGCCATCTCACCCACGCCGGCCACCTTGACC
TGCACCACCACCACCACCATGGCCGGTGATTCGGTGGCCGTCTCGCCGCT
CAGCATGGAGCTGAAGTCGCGGTTAGGCAGCCATCACAGCAGCATGCGCT
CCGTAGTCTCAGGTTATCTTCCAGGCCTGAGCGACAGTAGCGGCAATCTG
GTTGGAGGCGTATCGATGGCCACTTCCGGATTACAGGCCCCCAATCCGCT
CTACATGCAACCACAGGCCTCGCTGAGCGGCAGTTCCTATCATTTCCACG
AACTGGCC

BO05473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15444-PC 2832 ine-RC 1..792 17..808 3960 100 Plus
CG15444-PD 2832 ine-RD 1..792 17..808 3960 100 Plus
CG15444-PB 2832 ine-RB 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
ine-RF 3436 CG15444-RF 501..1292 17..808 3960 100 Plus
ine-RE 3458 CG15444-RE 523..1314 17..808 3960 100 Plus
ine-RB 3664 CG15444-RB 699..1490 17..808 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4474329..4474977 665..17 3245 100 Minus
2L 23513712 2L 4473831..4473979 808..660 745 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:35:53 has no hits.

BO05473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:04 Download gff for BO05473.5prime
Subject Subject Range Query Range Percent Splice Strand
ine-PD 1..792 17..808 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:12 Download gff for BO05473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15444-PB 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:21 Download gff for BO05473.5prime
Subject Subject Range Query Range Percent Splice Strand
ine-RB 694..1490 12..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:10:21 Download gff for BO05473.5prime
Subject Subject Range Query Range Percent Splice Strand
ine-RB 694..1490 12..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:10:21 Download gff for BO05473.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4473831..4473976 663..808 100 <- Minus
2L 4474332..4474982 12..662 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:21 Download gff for BO05473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4473831..4473976 663..808 100 <- Minus
arm_2L 4474332..4474982 12..662 99   Minus

BO05473.complete Sequence

2863 bp assembled on 2008-08-14

GenBank Submission: FJ630055

> BO05473.complete
GAAGTTATCAGTCGACATGGCGGAGAACAAAGACGTCAGCCAGGTGCTAA
ACACCACACCCGACCAGGTGGTCATCAATCGTGCCCCGCCCACCGGACTA
GCGCCCTTGAGGCACAGCCAACTCTCTGATAGCGGAGCGGAGAGCTGCTA
CGAGGGCGATGAGCAGGCACGGCTCATCCGGTCCTCATCGTCGCGGGCGC
ACAAGTTCATCATAATACCGGCCACGCCAGGAACACCGCCGGGAAGCGGT
GCGGTAGCAGGACCACTTCCCTTTCGCCAGACCAGCTCAACCACATCGCT
GGCGGCCATGGCAGCTGCGCTGCACAAACAGTCTCCACTGCGCCATACAT
CGGTGCGAACCAGGCCCAGTTCGGAGGTATTGCAACCGGGCCAGGTGCTC
GCCAATCAGCCAACGGCAGCTGTATCCACCTCCACGGTGACCTTCACCAT
TGACGACTGCAATGAAGAAGGCGATGCCATTCCTGCTGCAGCTTCAGTTC
CAGCTCCCGTGACCATGCCCGCCATCTCACCCACGCCGGCCACCTTGACC
TGCACCACCACCACCACCATGGCCGGTGATTCGGTGGCCGTCTCGCCGCT
CAGCATGGAGCTGAAGTCGCGGTTAGGCAGCCATCACAGCAGCATGCGCT
CCGTAGTCTCAGGTTATCTTCCAGGCCTGAGCGACAGTAGCGGCAATCTG
GTTGGAGGCGTATCGATGGCCACTTCCGGATTACAGGCCCCCAATCCGCT
CTACATGCAACCACAGGCCTCGCTGAGCGGCAGTTCCTATCATTTCCACG
AACTGGCCGGCAACCAGATCTACTCCGATGTGACCTCCGTTCGCTCGCTG
GCCTCCATTGGCATTGGGTCGACGGATGGGCGCAAGCTGGTCATCCGGCG
AGTGCCCACCACCGCCAACGAGCTGTTCGACATGGTCAATCCGCAGACGC
CACCACCCCTGGGGGTGGATGACGATGACAGCTACCTGGACATGTCCGAT
GAGACGGCCCAGCTCAAGCCGCGCCAGCAGCACTGGGCCAATAAGATGCA
ATTCGTCCTGGCCTGCATAGGATACTCGGTGGGTCTGGGCAACGTCTGGC
GTTTTCCGTACATGTGCTACAAGAGTGGCGGTGGTGTTTTTCTAGTACCT
TATTGCATAATACTGTTCATATGCAGCATTCCGCTGCTCTTCATGGAGCT
GTCCGTTGGCCAATACACCGGTCGAGGACCCATTGGAGCACTGGGTCAAC
TGTGTCCTCTGTTCAAGGGAGCCGGACTCGCCAGCGTGGTCGTCTCGTTC
CTCATGTCCACCTACTATAGTGTCATCATAGGCTACTCCATCTACTACTT
CTTTACGTCGTTCAAAACGGAAATGCCCTGGATCGACTGCAACAACAGGT
GGAACACGCCCGATTGCTGGGTGCCACAGCGCAAGGGGATTAATGCCAGT
GCGCCGGACACATCTCGCACTCCATCCGAGGAATTCTTCGAAAACAAGGT
CCTGCAGATCAGCGGTGGCCTGGAGTATCCGGGCATGATGCGCTGGGAGC
TATTTGCCTGCCTGATCTGCGCCTGGCTAATGGTCTACTTCGCCACGTGG
AAGTCGATCAAGTCGTCGGCGAAGGTGCGCTACTTCACGGCCACGTTTCC
GTTCGTGCTGATCATCATCCTGATGGTGCGCGCGGTGACCCTGGATGGAG
CTGCTGAGGGTTTGCGCTTCTTCTTCCGTCCCAAGTGGTCGGAGCTGAAG
AACGCCAATGTGTGGATCAACGCCGCATCCCAGAACTTCAACTCGCTGGG
CATTACATTCGGATCCATGATCTCCTTTGCCAGCTACAACAAGTACAACA
ACAATATCCTGCGAGATACCGTGGCAGTGAGTGCGGTGAATATGATCACC
AGTCTCCTGGTGGGCATCTTTGCCTTCTCCACGCTGGGCAATCTGGCGCT
GGAGCAGAACACCAATGTGAGGGACGTCATCGGTGATGGACCGGGCATGA
TATTCGTGGTGTATCCCCAGGCGATGGCTAAGATGCCGTACGCTCAGCTC
TGGGCGGTCATGTTCTTCTTCATGCTGCTCTGCCTAGGTCTGAACTCGCA
GTTTGCCATTGTGGAGGTTGTGGTCACGTCCATACAGGATGGCTTTCCGC
GGTGGATCAAGCGGCACCTGGGCTATCACGAAATCGTGGTCCTGTTCGTC
TGTGTCATCTCATGTCTCTTCGGGATGCCCAACATCATACAGGGTGGCAT
CTACTACTTCCAGCTAATGGATCACTACGCCGCCTCCGTGACGATCATGT
TTCTGGCCTTCTGTCAAATGATTGCCATTGCCTGGTTCTACGGCACGGGA
AGACTGTCGAAGAACGTCAAGCAAATGACCGGAAAGGCGCCTTCGTTCTA
TCTCAGATCCTGCTGGCTAGTCCTGGGACCCTGCCTCCTCTTTGCCATCT
GGGTATTGAGTCTGATCAACTACCACGAGCCCACCTACCACAATGGACGC
TATACCTATCCGGACTGGGCCTACGGAATAGGCTGGATGTTCGCTTCATT
CTCGCTGATCTGCATACCTGGATATGCGGTTATCAACTTCCTGCGCTCCA
GTGGAGATACCTTTTGGGAACGCATCCGGAACACGCTGAGACCCAACATC
TACGAGTGCAAGATTTGCGGGGAACACCACTGCGAACACGACTATCCGGA
GCAGGAGCAGTTTATGCTGGCCCAGGAAATGGCCACAGTGTACAAGCCCA
CCAACCCACACCTGCTCAATCTCGGCCAGAAGTGCGGCTACAACGCCATG
CAAGCCTCACCCTCACATGCGGAGGCAGGAGGACCATGTGGCCAGGCAAG
CTTTCTAGACCAT

BO05473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
ine-RF 2832 CG15444-PF 1..2829 17..2845 14145 100 Plus
ine-RE 2832 CG15444-PE 1..2829 17..2845 14145 100 Plus
ine-RB 2832 CG15444-PB 1..2829 17..2845 14145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
ine-RF 3436 CG15444-RF 501..3329 17..2845 14145 100 Plus
ine-RE 3458 CG15444-RE 523..3351 17..2845 14145 100 Plus
ine-RB 3664 CG15444-RB 699..3527 17..2845 14145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4468666..4469618 2444..1492 4765 100 Minus
2L 23513712 2L 4474329..4474977 665..17 3245 100 Minus
2L 23513712 2L 4473685..4473979 954..660 1475 100 Minus
2L 23513712 2L 4468137..4468361 2845..2621 1125 100 Minus
2L 23513712 2L 4471978..4472158 1135..955 905 100 Minus
2L 23513712 2L 4468425..4468601 2620..2444 885 100 Minus
2L 23513712 2L 4470993..4471129 1269..1133 685 100 Minus
2L 23513712 2L 4469832..4469966 1402..1268 675 100 Minus
2L 23513712 2L 4469675..4469770 1491..1396 480 100 Minus
2R 25286936 2R 24407017..24407126 1854..1745 190 78.2 Minus
Blast to na_te.dros performed on 2014-11-27 14:12:28 has no hits.

BO05473.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:35 Download gff for BO05473.complete
Subject Subject Range Query Range Percent Splice Strand
ine-RB 696..3539 12..2858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:33 Download gff for BO05473.complete
Subject Subject Range Query Range Percent Splice Strand
ine-RB 699..3527 17..2847 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:54:59 Download gff for BO05473.complete
Subject Subject Range Query Range Percent Splice Strand
ine-RB 701..3529 17..2847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:52 Download gff for BO05473.complete
Subject Subject Range Query Range Percent Splice Strand
ine-RB 699..3527 17..2847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:52 Download gff for BO05473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4468133..4468361 2621..2847 99 <- Minus
2L 4471980..4472158 955..1133 100 <- Minus
2L 4468425..4468601 2444..2620 100 <- Minus
2L 4468667..4469618 1492..2443 100 <- Minus
2L 4469675..4469767 1399..1491 100 <- Minus
2L 4469836..4469965 1269..1398 100 <- Minus
2L 4470994..4471128 1134..1268 100 <- Minus
2L 4473685..4473976 663..954 100 <- Minus
2L 4474332..4474977 17..662 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:33 Download gff for BO05473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4468133..4468361 2621..2847 99 <- Minus
arm_2L 4468425..4468601 2444..2620 100 <- Minus
arm_2L 4468667..4469618 1492..2443 100 <- Minus
arm_2L 4469675..4469767 1399..1491 100 <- Minus
arm_2L 4469836..4469965 1269..1398 100 <- Minus
arm_2L 4470994..4471128 1134..1268 100 <- Minus
arm_2L 4471980..4472158 955..1133 100 <- Minus
arm_2L 4473685..4473976 663..954 100 <- Minus
arm_2L 4474332..4474977 17..662 100   Minus

BO05473.pep Sequence

Translation from 16 to 2863

> BO05473.pep
MAENKDVSQVLNTTPDQVVINRAPPTGLAPLRHSQLSDSGAESCYEGDEQ
ARLIRSSSSRAHKFIIIPATPGTPPGSGAVAGPLPFRQTSSTTSLAAMAA
ALHKQSPLRHTSVRTRPSSEVLQPGQVLANQPTAAVSTSTVTFTIDDCNE
EGDAIPAAASVPAPVTMPAISPTPATLTCTTTTTMAGDSVAVSPLSMELK
SRLGSHHSSMRSVVSGYLPGLSDSSGNLVGGVSMATSGLQAPNPLYMQPQ
ASLSGSSYHFHELAGNQIYSDVTSVRSLASIGIGSTDGRKLVIRRVPTTA
NELFDMVNPQTPPPLGVDDDDSYLDMSDETAQLKPRQQHWANKMQFVLAC
IGYSVGLGNVWRFPYMCYKSGGGVFLVPYCIILFICSIPLLFMELSVGQY
TGRGPIGALGQLCPLFKGAGLASVVVSFLMSTYYSVIIGYSIYYFFTSFK
TEMPWIDCNNRWNTPDCWVPQRKGINASAPDTSRTPSEEFFENKVLQISG
GLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLII
ILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLGITFGS
MISFASYNKYNNNILRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTN
VRDVIGDGPGMIFVVYPQAMAKMPYAQLWAVMFFFMLLCLGLNSQFAIVE
VVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISCLFGMPNIIQGGIYYFQL
MDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPSFYLRSCW
LVLGPCLLFAIWVLSLINYHEPTYHNGRYTYPDWAYGIGWMFASFSLICI
PGYAVINFLRSSGDTFWERIRNTLRPNIYECKICGEHHCEHDYPEQEQFM
LAQEMATVYKPTNPHLLNLGQKCGYNAMQASPSHAEAGGPCGQASFLDH

BO05473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
ine-PF 943 CG15444-PF 1..943 1..943 4998 100 Plus
ine-PE 943 CG15444-PE 1..943 1..943 4998 100 Plus
ine-PB 943 CG15444-PB 1..943 1..943 4998 100 Plus
ine-PC 943 CG15444-PC 1..943 1..943 4998 100 Plus
ine-PA 658 CG15444-PA 15..658 300..943 3417 98.1 Plus