Clone BO05476 Report

Search the DGRC for BO05476

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:54
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptBtk29A-RB
Protein status:BO05476.pep: Imported from assembly
Sequenced Size:2392

Clone Sequence Records

BO05476.3prime Sequence

899 bp (828 high quality bases) assembled on 2005-12-02

> BO05476.3prime
ATGGTCTAGAAAGCTTGCGTCGGTTAGCGTTTGGGCCACAAGAGCCAGCT
GATCCATGAGCACACGGAAAGCGGGACGCTCCTCGGGTCCATGTGACCAG
CACAACTTCATGACATCATAAATCTCCTTGGCACACGACTTTGGTTTTTC
TAGGATAATTCCGCGCTGCACACGCTCCACAACCTCGGTATTCTTTAGGC
GACCGTATGGCATCTTGCCGCAAGTGAAGATCTCCCACATCAGCACACCG
TATGCCCACACATCGCTCTTAGAGGAGAAGCGCGTGTAGTTGAGCACTTC
GGGCGGGGCCCACTTGATGGGGAACTTGGTTCCGCCAGAGCTGGTATACT
GATCGTCGAGAACGTATCGGGCCAATCCAAAGTCGGCCACTTTAACGACA
TTCTCGGAACCCACGAGACAGTTGCGGGCAGCCAGATCCCGGTGAATGTA
GTTATGGCGCTCCAGGTAGGTCATTCCCTTGCTAACCTGTATGCACATGT
CAAGGAGTAGACCCATATTACCAATCAGGGTCTTCTCATGCCGTCGCAAG
TAATTCAACAAGGATCCGTGCTTCATGTACTCGGTCACAATGTAGATGGG
CCGGTGCTTGGAGCAGACGCCATATAGCTGCACAAGATTTGGATGCTGCA
GCTTGGTCATCACCTTGGCCTCCTCAATGAAATCGTCCTCGGACATGGTT
CCTTCCTTCATCATCTTGACCGCTGTGTCGATAGACCCACGCCACTTGCC
GCGCCGCACAACACCAAACTGTCCCGATCCAAGCTCCTCCATCAGCATCA
GTTCCATCGGATGGATCTCCCATTTGTCGTGGGACAATCCCGCCGTCGGT
GGAACTGGGCGATCGCAGGGCGAGGATTTGAGTCGGCAAGCCAAACCCC

BO05476.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8049-PC 1812 Btk29A-RC 929..1809 899..19 4405 100 Minus
CG8049-PB 2361 Btk29A-RB 1478..2358 899..19 4405 100 Minus
CG8049-PD 2361 Btk29A-RD 1478..2358 899..19 4405 100 Minus
CG8049-PA 1812 Btk29A-RA 929..1809 899..19 4405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Btk29A-RH 3826 CG8049-RH 1910..2790 899..19 4405 100 Minus
Btk29A-RG 3302 CG8049-RG 1386..2266 899..19 4405 100 Minus
Btk29A-RE 4785 CG8049-RE 1737..2617 899..19 4405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8260906..8261559 246..899 3270 100 Plus
2L 23513712 2L 8260696..8260832 113..249 685 100 Plus
2L 23513712 2L 8260541..8260636 19..114 480 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:25:46 has no hits.

BO05476.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:09 Download gff for BO05476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8049-PB 1478..2361 15..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:19 Download gff for BO05476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8049-PA 929..1812 15..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:37:01 Download gff for BO05476.3prime
Subject Subject Range Query Range Percent Splice Strand
Btk29A-RE 1737..2621 14..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:25 Download gff for BO05476.3prime
Subject Subject Range Query Range Percent Splice Strand
Btk29A-RE 1737..2621 14..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:35:25 Download gff for BO05476.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8260537..8260636 14..114 98 <- Plus
2L 8260698..8260831 115..248 100 <- Plus
2L 8260909..8261559 249..899 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:37:01 Download gff for BO05476.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8260537..8260636 14..114 98 <- Plus
arm_2L 8260698..8260831 115..248 100 <- Plus
arm_2L 8260909..8261559 249..899 100   Plus

BO05476.5prime Sequence

868 bp (831 high quality bases) assembled on 2005-12-02

> BO05476.5prime
GAAGTTATCAGTCGACATGATGGGCACTAAGCATCGAAACTCGCATGTCA
ATGGCAGCATTAAGTCATCATCATCGCTGCGATCGAGCAGCAAATCCTTT
CAAGCAAAAATGGATCTGATGTCCGAAAGGCTGTACGATGTCGTGAAAAG
TGGATCGATGGTGAAAAGGGCTCAAAACAAGAAGCGTTTCACCCCCGTGA
ATTACAAACATCGATGGTTTGAGTTGACCAAGCGAACTTTCAGCTACTTC
GATGTGGAAAATGTGGAGCGGAGACGCGAACGTGGTCGCATTCATTTGAA
GGGCGTTCGCCTGGTGGAGGAGGCGACGGTCAGTGGCGAGGGCGGCGATC
CCTTTGCACCGGATGGTTATCCGTTCCAAGTGGGCTACTGTGAGATCTCT
GCGTCGGCCAATTCGCATCAGCTGGAGAACGGCAACGGCGGTGGTAGTGG
CGTTGGAATCGAGGGTCAGCAGAGTGGACGAGCGGTGCCACAGTACACAC
TCTACGTGATCGCCAACAGCGAAAAGGAGCGCAGCGAGTGGATCCGCGCC
ATCCGCCAAGTTTGTGAGGATAGTAATACTCCAAAATCGTATCGCTATCA
TCCGGGCTTGTGGTCTGGAAAGAAGTGGAGCTGCTGCAAGGGATTATCTC
GAACCACATTTGGTTGCAGAGCAGCCGCCCATTGGCGTGAGGCCAACAAT
AATCCAAGCAACGGCAGTTCTCCAGCCCAGAATTCAACGCGCAGCATCAG
TCCCAACAGCTCCACGACCAACAGTCAGTTTAGCTTGCAGCACAACAGCT
CGGGGAGTCTCGGCGGAGGAGTGGGCGGCGGATTGGGAGGCGGAGGCAGC
CTTGGCCTANGCGGCGGA

BO05476.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8049-PB 2361 Btk29A-RB 1..852 17..868 4241 99.8 Plus
CG8049-PD 2361 Btk29A-RD 1..852 17..868 4241 99.8 Plus
CG8049-PC 1812 Btk29A-RC 143..303 708..868 786 99.3 Plus
CG8049-PA 1812 Btk29A-RA 143..303 708..868 786 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Btk29A-RE 4785 CG8049-RE 260..1111 17..868 4249 99.9 Plus
Btk29A-RD 3674 CG8049-RD 281..1132 17..868 4249 99.9 Plus
Btk29A-RB 3420 CG8049-RB 593..1444 17..868 4249 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8298071..8298322 268..17 1260 100 Minus
2L 23513712 2L 8283869..8284064 560..365 980 100 Minus
2L 23513712 2L 8262520..8262680 868..708 794 99.4 Minus
2L 23513712 2L 8283408..8283557 708..559 750 100 Minus
2L 23513712 2L 8284124..8284222 365..267 495 100 Minus
Blast to na_te.dros performed 2015-02-13 05:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6934 694..809 109 65.9 Plus

BO05476.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:09 Download gff for BO05476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8049-PB 1..851 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:20 Download gff for BO05476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8049-PD 1..851 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:02 Download gff for BO05476.5prime
Subject Subject Range Query Range Percent Splice Strand
Btk29A-RB 580..1443 5..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:52 Download gff for BO05476.5prime
Subject Subject Range Query Range Percent Splice Strand
Btk29A-RB 580..1443 5..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:52 Download gff for BO05476.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8262521..8262680 708..867 99 <- Minus
2L 8283409..8283555 561..707 100 <- Minus
2L 8283869..8284064 365..560 100 <- Minus
2L 8284125..8284220 269..364 100 <- Minus
2L 8298071..8298333 5..268 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:02 Download gff for BO05476.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8262521..8262680 708..867 99 <- Minus
arm_2L 8283409..8283555 561..707 100 <- Minus
arm_2L 8283869..8284064 365..560 100 <- Minus
arm_2L 8284125..8284220 269..364 100 <- Minus
arm_2L 8298071..8298333 5..268 98   Minus

BO05476.complete Sequence

2392 bp assembled on 2008-08-14

GenBank Submission: FJ630057

> BO05476.complete
GAAGTTATCAGTCGACATGATGGGCACTAAGCATCGAAACTCGCATGTCA
ATGGCAGCATTAAGTCATCATCATCGCTGCGATCGAGCAGCAAATCCTTT
CAAGCAAAAATGGATCTGATGTCCGAAAGGCTGTACGATGTCGTGAAAAG
TGGATCGATGGTGAAAAGGGCTCAAAACAAGAAGCGTTTCACCCCCGTGA
ATTACAAACATCGATGGTTTGAGTTGACCAAGCGAACTTTCAGCTACTTC
GATGTGGAAAATGTGGAGCGGAGACGCGAACGTGGTCGCATTCATTTGAA
GGGCGTTCGCCTGGTGGAGGAGGCGACGGTCAGTGGCGAGGGCGGCGATC
CCTTTGCACCGGATGGTTATCCGTTCCAAGTGGGCTACTGTGAGATCTCT
GCGTCGGCCAATTCGCATCAGCTGGAGAACGGCAACGGCGGTGGTAGTGG
CGTTGGAATCGAGGGTCAGCAGAGTGGACGAGCGGTGCCACAGTACACAC
TCTACGTGATCGCCAACAGCGAAAAGGAGCGCAGCGAGTGGATCCGCGCC
ATCCGCCAAGTTTGTGAGGATAGTAATACTCCAAAATCGTATCGCTATCA
TCCGGGCTTGTGGTCTGGAAAGAAGTGGAGCTGCTGCAAGGGATTATCTC
GAACCACATTTGGTTGCAGAGCAGCCGCCCATTGGCGTGAGGCCAACAAT
AATCCAAGCAACGGCAGTTCTCCAGCCCAGAATTCAACGCGCAGCATCAG
TCCCAACAGCTCCACGACCAACAGTCAGTTTAGCTTGCAGCACAACAGCT
CGGGGAGTCTCGGCGGAGGAGTGGGCGGCGGATTGGGAGGCGGAGGCAGC
CTTGGCCTAGGCGGCGGAGGAGGAGGTGGCGGCAGTTGCACGCCCACATC
GCTACAGCCTCAGTCCTCGCTGACAACTTTCAAGCAGTCCCCAACTCTAT
TGAACGGCAACGGAACTCTATTGGATGCCAATATGCCTGGCGGTATACCC
ACTCCCGGAACACCAAATTCCAAAGCCAAGGACAACTCCCACTTTGTCAA
GCTGGTGGTGGCTCTCTATCCATTCAAGGCCATCGAAGGCGGCGATTTAT
CGCTGGAAAAGAATGCCGAATACGAAGTGATAGATGACTCACAAGAGCAC
TGGTGGAAGGTCAAAGATGCCTTGGGGAATGTCGGCTATATACCCAGCAA
CTATGTCAAGCCGAAGGCTCTTCTGGGCCTGGAGCGCTATGAATGGTATG
TGGGCGACATGTCACGACAGAGAGCCGAATCGCTGCTGAAGCAAGGTGAT
AAGGAGGGCTGCTTTGTGGTCAGGAAGTCATCGACCAAGGGTCTCTACAC
ACTATCGCTGCATACCAAAGTTCCACAGTCGCATGTGAAGCACTACCACA
TCAAGCAAAATGCTCGCTGCGAGTATTATTTGAGTGAGAAGCACTGCTGT
GAAACAATTCCGGATCTGATTAACTACCATCGCCACAACTCTGGGGGTTT
GGCTTGCCGACTCAAATCCTCGCCCTGCGATCGCCCAGTTCCACCGACGG
CGGGATTGTCCCACGACAAATGGGAGATCCATCCGATGGAACTGATGCTG
ATGGAGGAGCTTGGATCGGGACAGTTTGGTGTTGTGCGGCGCGGCAAGTG
GCGTGGGTCTATCGACACAGCGGTCAAGATGATGAAGGAAGGAACCATGT
CCGAGGACGATTTCATTGAGGAGGCCAAGGTGATGACCAAGCTGCAGCAT
CCAAATCTTGTGCAGCTATATGGCGTCTGCTCCAAGCACCGGCCCATCTA
CATTGTGACCGAGTACATGAAGCACGGATCCTTGTTGAATTACTTGCGAC
GGCATGAGAAGACCCTGATTGGTAATATGGGTCTACTCCTTGACATGTGC
ATACAGGTTAGCAAGGGAATGACCTACCTGGAGCGCCATAACTACATTCA
CCGGGATCTGGCTGCCCGCAACTGTCTCGTGGGTTCCGAGAATGTCGTTA
AAGTGGCCGACTTTGGATTGGCCCGATACGTTCTCGACGATCAGTATACC
AGCTCTGGCGGAACCAAGTTCCCCATCAAGTGGGCCCCGCCCGAAGTGCT
CAACTACACGCGCTTCTCCTCTAAGAGCGATGTGTGGGCATACGGTGTGC
TGATGTGGGAGATCTTCACTTGCGGCAAGATGCCATACGGTCGCCTAAAG
AATACCGAGGTTGTGGAGCGTGTGCAGCGCGGAATTATCCTAGAAAAACC
AAAGTCGTGTGCCAAGGAGATTTATGATGTCATGAAGTTGTGCTGGTCAC
ATGGACCCGAGGAGCGTCCCGCTTTCCGTGTGCTCATGGATCAGCTGGCT
CTTGTGGCCCAAACGCTAACCGACGCAAGCTTTCTAGACCAT

BO05476.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
Btk29A-RE 2361 CG8049-PE 1..2358 17..2374 11790 100 Plus
Btk29A-RD 2361 CG8049-PD 1..2358 17..2374 11790 100 Plus
Btk29A-RB 2361 CG8049-PB 1..2358 17..2374 11790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
Btk29A-RE 4785 CG8049-RE 260..2617 17..2374 11790 100 Plus
Btk29A-RD 3674 CG8049-RD 281..2638 17..2374 11790 100 Plus
Btk29A-RB 3420 CG8049-RB 593..2950 17..2374 11790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8260906..8261681 2147..1372 3880 100 Minus
2L 23513712 2L 8298071..8298322 268..17 1260 100 Minus
2L 23513712 2L 8262475..8262680 913..708 1030 100 Minus
2L 23513712 2L 8283869..8284064 560..365 980 100 Minus
2L 23513712 2L 8283408..8283557 708..559 750 100 Minus
2L 23513712 2L 8260696..8260832 2280..2144 685 100 Minus
2L 23513712 2L 8261943..8262075 1242..1110 665 100 Minus
2L 23513712 2L 8261740..8261868 1371..1243 645 100 Minus
2L 23513712 2L 8262284..8262404 1031..911 605 100 Minus
2L 23513712 2L 8284124..8284222 365..267 495 100 Minus
2L 23513712 2L 8260541..8260636 2374..2279 480 100 Minus
2L 23513712 2L 8262139..8262221 1111..1029 415 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:12:25 has no hits.

BO05476.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:21 Download gff for BO05476.complete
Subject Subject Range Query Range Percent Splice Strand
Btk29A-RE 487..2861 5..2379 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:06:24 Download gff for BO05476.complete
Subject Subject Range Query Range Percent Splice Strand
Btk29A-RB 593..2950 17..2376 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:29 Download gff for BO05476.complete
Subject Subject Range Query Range Percent Splice Strand
Btk29A-RE 500..2857 17..2376 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:15 Download gff for BO05476.complete
Subject Subject Range Query Range Percent Splice Strand
Btk29A-RB 593..2950 17..2376 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:15 Download gff for BO05476.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8260539..8260636 2279..2376 97 <- Minus
2L 8260698..8260831 2145..2278 100 <- Minus
2L 8260909..8261681 1372..2144 100 <- Minus
2L 8261740..8261868 1243..1371 100 <- Minus
2L 8261943..8262073 1112..1242 100 <- Minus
2L 8262139..8262219 1031..1111 100 <- Minus
2L 8262285..8262401 914..1030 100 <- Minus
2L 8262475..8262680 708..913 100 <- Minus
2L 8283409..8283555 561..707 100 <- Minus
2L 8283869..8284064 365..560 100 <- Minus
2L 8284125..8284220 269..364 100 <- Minus
2L 8298071..8298322 17..268 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:06:24 Download gff for BO05476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8260539..8260636 2279..2376 97 <- Minus
arm_2L 8260698..8260831 2145..2278 100 <- Minus
arm_2L 8260909..8261681 1372..2144 100 <- Minus
arm_2L 8261740..8261868 1243..1371 100 <- Minus
arm_2L 8261943..8262073 1112..1242 100 <- Minus
arm_2L 8262139..8262219 1031..1111 100 <- Minus
arm_2L 8262285..8262401 914..1030 100 <- Minus
arm_2L 8262475..8262680 708..913 100 <- Minus
arm_2L 8283409..8283555 561..707 100 <- Minus
arm_2L 8283869..8284064 365..560 100 <- Minus
arm_2L 8284125..8284220 269..364 100 <- Minus
arm_2L 8298071..8298322 17..268 100   Minus

BO05476.pep Sequence

Translation from 16 to 2392

> BO05476.pep
MMGTKHRNSHVNGSIKSSSSLRSSSKSFQAKMDLMSERLYDVVKSGSMVK
RAQNKKRFTPVNYKHRWFELTKRTFSYFDVENVERRRERGRIHLKGVRLV
EEATVSGEGGDPFAPDGYPFQVGYCEISASANSHQLENGNGGGSGVGIEG
QQSGRAVPQYTLYVIANSEKERSEWIRAIRQVCEDSNTPKSYRYHPGLWS
GKKWSCCKGLSRTTFGCRAAAHWREANNNPSNGSSPAQNSTRSISPNSST
TNSQFSLQHNSSGSLGGGVGGGLGGGGSLGLGGGGGGGGSCTPTSLQPQS
SLTTFKQSPTLLNGNGTLLDANMPGGIPTPGTPNSKAKDNSHFVKLVVAL
YPFKAIEGGDLSLEKNAEYEVIDDSQEHWWKVKDALGNVGYIPSNYVKPK
ALLGLERYEWYVGDMSRQRAESLLKQGDKEGCFVVRKSSTKGLYTLSLHT
KVPQSHVKHYHIKQNARCEYYLSEKHCCETIPDLINYHRHNSGGLACRLK
SSPCDRPVPPTAGLSHDKWEIHPMELMLMEELGSGQFGVVRRGKWRGSID
TAVKMMKEGTMSEDDFIEEAKVMTKLQHPNLVQLYGVCSKHRPIYIVTEY
MKHGSLLNYLRRHEKTLIGNMGLLLDMCIQVSKGMTYLERHNYIHRDLAA
RNCLVGSENVVKVADFGLARYVLDDQYTSSGGTKFPIKWAPPEVLNYTRF
SSKSDVWAYGVLMWEIFTCGKMPYGRLKNTEVVERVQRGIILEKPKSCAK
EIYDVMKLCWSHGPEERPAFRVLMDQLALVAQTLTDASFLDH

BO05476.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Btk29A-PE 786 CG8049-PE 1..786 1..786 4208 100 Plus
Btk29A-PD 786 CG8049-PD 1..786 1..786 4208 100 Plus
Btk29A-PB 786 CG8049-PB 1..786 1..786 4208 100 Plus
Btk29A-PF 603 CG8049-PF 26..603 215..786 2975 96.7 Plus
Btk29A-PA 603 CG8049-PA 26..603 215..786 2975 96.7 Plus