Clone Sequence Records
BO05483.3prime Sequence
871 bp (854 high quality bases) assembled on 2005-12-02
> BO05483.3prime
ATGGTCTAGAAAGCTTGCAACTAGACTCGAGACATTGTTGTAGAGGCCAA
CGGCAGACAGCTCGTCCAGATCGATTTCATTGGATGGAAGATTGGGATGA
GGCCAGTTCCTTGGCCTTTGATTAACATGGGGCGGCACAATGGCCTGAAA
GGTGGGGGACTGCAGAGGCCTATAGGCTACCGCATCCACGTAGTCCACTT
GTCTTGGTGGAGCATTTGGATGTGGAATCCTTCCCACGTAAAGATCTTCA
CTGCGATAGAGACTCGCATTTGGTACGTAGCCGGAGTGCAGCCTTCTCTG
CGGAGTTTGCGGAATCGGTGGACGGTGGGGCAGTTCATGGAAGTAAGCAT
CTTTGGGTATGTGTCTCTCGGGCAGCCCAAACTGGGCGCTACTCCGGTGG
GGAATACTATACGTGGGCGAAGGGTTCGAAGAGGTGCCCTCCAAGTGATG
GAAGTTATTGTTCAAGCGGGAGTGTGATCTTGCGGCGATCACATGTGCCG
TCTGGGAGTCCTGTCGATTGGAGTCAATGGTGTTTTGCAGTTGGGCCACC
ATATCCCTCACCTGACCAGCGTTCGGCTTCTTTAGGCACTTGATTTCACT
GTTCCGAATCTCCACCTTACTCATACTTTCATTGCCATTTTGACGCACTT
CTGTTTCCTCGGCGTACTCCATGATGGGATTGGAGTAAAATAAATTCGAC
ATGACGGGATAGTTGTCTTCCAAGCAAAGAGGCTGCCGTTTCATCAGATT
GGAGATACCTGCCGCCTCGCTCGCTTGCTCCTTGTAGAGCAGCTTGTCGC
CTCCCATTCCCTCGGCAGTTTCATTGACAGCCGTCTCCTCTTTGCCCAGA
TCCGCGAAGGAGGCATCTTTT
BO05483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12342-PA | 2784 | CG12342-RA | 1929..2781 | 871..19 | 4265 | 100 | Minus |
| CG12342-PB | 2784 | CG12342-RB | 1929..2781 | 871..19 | 4265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 3539 | CG12342-RB | 2525..3377 | 871..19 | 4265 | 100 | Minus |
| dgo-RA | 3142 | CG12342-RA | 2128..2980 | 871..19 | 4265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10816199..10817051 | 19..871 | 4265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:42:27 has no hits.
BO05483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:17 Download gff for
BO05483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12342-PB | 1929..2784 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:32 Download gff for
BO05483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12342-PB | 1929..2784 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:04 Download gff for
BO05483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 2128..2986 | 11..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:59 Download gff for
BO05483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 2128..2986 | 11..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:59 Download gff for
BO05483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10816193..10817051 | 11..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:04 Download gff for
BO05483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6703698..6704556 | 11..871 | 99 | | Plus |
BO05483.5prime Sequence
487 bp (485 high quality bases) assembled on 2005-12-02
> BO05483.5prime
GAAGTTATCAGTCGACATGCAGCATGGATCCTCCCGCATTCCGAAACAGG
AAGCTCTCCCGAATGCGATATCCGGGCCCGACTCCAGCAATTGGACTTCG
CTGCACGAGGCGGTAGCCGCCGGAGATGATCGCCGGGTGGAGGGTCTCCT
GTTCAGCAATGCTGATCGACTGGCCAGGGAATCCGTGCAGGGGAATACCC
CGCTCCATGAGGCCGCCAGTCGGGGGTTCAGTCGCTGCGTGAAATTGATC
TGCACGCCCCCCACGCCACCCGCTTCCTCGGGGGTGGGAAAAGCAGCAAA
GGGACAGAAGGACAAAGACAAGGATAAGAACAAGGGCAGAGTGAAGGTGG
CCCACCAGACCATCGAAGCCCTACACAATAGCGCCCTGGGTATTGCCAAC
AACGAAGGGTTGTCCGCCCTGCACTTGGCCGCTCAAAATGGTCACAATCA
GAGCTCTAGGGAGCTACTGCTGGCCGGCGCCGATCCC
BO05483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12342-PA | 2784 | CG12342-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG12342-PB | 2784 | CG12342-RB | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 3539 | CG12342-RB | 597..1067 | 17..487 | 2355 | 100 | Plus |
| dgo-RA | 3142 | CG12342-RA | 200..670 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10818564..10818975 | 487..76 | 2060 | 100 | Minus |
| 2R | 25286936 | 2R | 10819041..10819100 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:40:18 has no hits.
BO05483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:19 Download gff for
BO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12342-PB | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:34 Download gff for
BO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12342-PB | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:14 Download gff for
BO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..670 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:40 Download gff for
BO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..670 | 17..487 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:40 Download gff for
BO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10818564..10818974 | 77..487 | 100 | <- | Minus |
| 2R | 10819041..10819110 | 5..76 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:14 Download gff for
BO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6706069..6706479 | 77..487 | 100 | <- | Minus |
| arm_2R | 6706546..6706615 | 5..76 | 93 | | Minus |
BO05483.complete Sequence
2815 bp assembled on 2008-08-14
GenBank Submission: FJ630061
> BO05483.complete
GAAGTTATCAGTCGACATGCAGCATGGATCCTCCCGCATTCCGAAACAGG
AAGCTCTCCCGAATGCGATATCCGGGCCCGACTCCAGCAATTGGACTTCG
CTGCACGAGGCGGTAGCCGCCGGAGATGATCGCCGGGTGGAGGGTCTCCT
GTTCAGCAATGCTGATCGACTGGCCAGGGAATCCGTGCAGGGGAATACCC
CGCTCCATGAGGCCGCCAGTCGGGGGTTCAGTCGCTGCGTGAAATTGATC
TGCACGCCCCCCACGCCACCCGCTTCCTCGGGGGTGGGAAAAGCAGCAAA
GGGACAGAAGGACAAAGACAAGGATAAGAACAAGGGCAGAGTGAAGGTGG
CCCACCAGACCATCGAAGCCCTACACAATAGCGCCCTGGGTATTGCCAAC
AACGAAGGGTTGTCCGCCCTGCACTTGGCCGCTCAAAATGGTCACAATCA
GAGCTCTAGGGAGCTACTGCTGGCCGGCGCCGATCCCGATGTCCGGAATA
ATTATGGAGATACTCCGCTGCACACCGCCTGCAGATATGGACATGCAGGA
GTCTCCCGGATCCTGCTCTCCGCCCTTTGCGATCCGAATAAAACAAATCT
GAACGGCGACACCGCTTTGCACATCACCTGTGCCATGGGTCGCAGGAAGC
TGACAAGGATTCTCCTAGAGGCAGATGCTCGGCTGGGCATTAAAAACGCA
CAAGGCGACTGCCCCATGCACATAGCGATCAGGAAGAACTACCGTGAAAT
CATCGAGATCCTGAACACGCCGAAGAAGATACGGAATCGCAAGGAGAAAC
CCAAGGAGGGCGGCAGCAGATCGGACAAGGACAGAGATCGTGAAAGGGAT
GTGGTGGACAAGGGTATCAACTGGTCACCCTATGGCTGTCACTACTTTCC
CGATCCGCGTGCCTTTCCTTCACCAAAACTGGAGACACTGCCCAAGGAGC
CACTTAAGTCGGGGGAGCAATACTTCCTGGATTTGGCTGGTCATATTCAC
AAGGGTCCGGTCAGCGTGGGCAACACATGCTATTGCGGTCCCTTCTTCCG
TCACATTGAAAACAAACTAAATTGCAATCGAAAGAGTTTGAAGAAATACG
TTCACAAAACCAAGGAACGTCTAGGTCACAAAGTTCAGGCATTGGCAATC
AAGACGAACGATCAGATTGAACAGCTCACAAGAACGATGATCGAGGACAG
ATTGCGATGCGAGAGCAAGAGGCAGCACCTCAGTGAGTTCCTGCGACGAG
GTGAACCTATGCGGTCCACCTTCGATCAGCAGAACAAGAGCTCAAGGATC
GAAAGAACAATGTCCAGGTGCCGCAGTCTAGAGCTCTTGGAAAACAACCA
CGAAGGTGGTAGGCTCACCAACTCACGGAGTGTAGATGTCCTGGAAGATC
AGGCAGTGGAGGCTATAGTACACCGATCAGCGGAGGTCCAGGTGGATAGC
GACAGCGATGACGATTCCAATGAAGCTCGGGATGAAGAAGAGGCAGAAGT
GGGTGACAAGGACCAGGTGCAAGAAGAGGCGGAACCAGAGGAGCACTCGA
AGCTAGATGAACTTAAGCTAGATTTCCTAAAAGTCTCCGAAAGACTGGGA
GTGCTTTTAGAGAAAACCACCCTGATCATGGAAAGGGACAGCGAACAGGA
GAGCAAGCGCCAGCTTTCTTCCTTATCGCCACCTTATAATCCCCATCCAA
GGGCGGAGTCTGCCCAACTTCGAGAAGATAAAGAGAGTGTTAATAGTCCC
AATTTCGACGAGTACGCCAACGTGATACGACGCTATCCGAACTCCAGTGA
GACCTCAAATCCCTCCCAGAACTCCAACAGCTGGGACTGGGAGGCATCAC
CCACGGGCAGCAATCCCCACCCGGATTACAATAAGTACTACCAGCGCATT
GGGAGAGGAGAGAACATGCTGAACTCGGTGATCAAGGCGCTTCGAAAAGA
TGCCTCCTTCGCGGATCTGGGCAAAGAGGAGACGGCTGTCAATGAAACTG
CCGAGGGAATGGGAGGCGACAAGCTGCTCTACAAGGAGCAAGCGAGCGAG
GCGGCAGGTATCTCCAATCTGATGAAACGGCAGCCTCTTTGCTTGGAAGA
CAACTATCCCGTCATGTCGAATTTATTTTACTCCAATCCCATCATGGAGT
ACGCCGAGGAAACAGAAGTGCGTCAAAATGGCAATGAAAGTATGAGTAAG
GTGGAGATTCGGAACAGTGAAATCAAGTGCCTAAAGAAGCCGAACGCTGG
TCAGGTGAGGGATATGGTGGCCCAACTGCAAAACACCATTGACTCCAATC
GACAGGACTCCCAGACGGCACATGTGATCGCCGCAAGATCACACTCCCGC
TTGAACAATAACTTCCATCACTTGGAGGGCACCTCTTCGAACCCTTCGCC
CACGTATAGTATTCCCCACCGGAGTAGCGCCCAGTTTGGGCTGCCCGAGA
GACACATACCCAAAGATGCTTACTTCCATGAACTGCCCCACCGTCCACCG
ATTCCGCAAACTCCGCAGAGAAGGCTGCACTCCGGCTACGTACCAAATGC
GAGTCTCTATCGCAGTGAAGATCTTTACGTGGGAAGGATTCCACATCCAA
ATGCTCCACCAAGACAAGTGGACTACGTGGATGCGGTAGCCTATAGGCCT
CTGCAGTCCCCCACCTTTCAGGCCATTGTGCCGCCCCATGTTAATCAAAG
GCCAAGGAACTGGCCTCATCCCAATCTTCCATCCAATGAAATCGATCTGG
ACGAGCTGTCTGCCGTTGGCCTCTACAACAATGTCTCGAGTCTAGTTGCA
AGCTTTCTAGACCAT
BO05483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 2784 | CG12342-PB | 1..2781 | 17..2797 | 13905 | 100 | Plus |
| dgo-RA | 2784 | CG12342-PA | 1..2781 | 17..2797 | 13905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 3539 | CG12342-RB | 597..3377 | 17..2797 | 13905 | 100 | Plus |
| dgo-RA | 3142 | CG12342-RA | 200..2980 | 17..2797 | 13905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10816199..10818493 | 2797..503 | 11475 | 100 | Minus |
| 2R | 25286936 | 2R | 10818549..10818975 | 502..76 | 2135 | 100 | Minus |
| 2R | 25286936 | 2R | 10819041..10819100 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:43:41 has no hits.
BO05483.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:41 Download gff for
BO05483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RB | 575..3372 | 5..2805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:48 Download gff for
BO05483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..2980 | 17..2799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:41 Download gff for
BO05483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RB | 586..3366 | 17..2799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:33 Download gff for
BO05483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..2980 | 17..2799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:33 Download gff for
BO05483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10816196..10818493 | 503..2799 | 99 | <- | Minus |
| 2R | 10818549..10818974 | 77..502 | 100 | <- | Minus |
| 2R | 10819041..10819100 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:48 Download gff for
BO05483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6703701..6705998 | 503..2799 | 99 | <- | Minus |
| arm_2R | 6706054..6706479 | 77..502 | 100 | <- | Minus |
| arm_2R | 6706546..6706605 | 17..76 | 100 | | Minus |
BO05483.pep Sequence
Translation from 16 to 2815
> BO05483.pep
MQHGSSRIPKQEALPNAISGPDSSNWTSLHEAVAAGDDRRVEGLLFSNAD
RLARESVQGNTPLHEAASRGFSRCVKLICTPPTPPASSGVGKAAKGQKDK
DKDKNKGRVKVAHQTIEALHNSALGIANNEGLSALHLAAQNGHNQSSREL
LLAGADPDVRNNYGDTPLHTACRYGHAGVSRILLSALCDPNKTNLNGDTA
LHITCAMGRRKLTRILLEADARLGIKNAQGDCPMHIAIRKNYREIIEILN
TPKKIRNRKEKPKEGGSRSDKDRDRERDVVDKGINWSPYGCHYFPDPRAF
PSPKLETLPKEPLKSGEQYFLDLAGHIHKGPVSVGNTCYCGPFFRHIENK
LNCNRKSLKKYVHKTKERLGHKVQALAIKTNDQIEQLTRTMIEDRLRCES
KRQHLSEFLRRGEPMRSTFDQQNKSSRIERTMSRCRSLELLENNHEGGRL
TNSRSVDVLEDQAVEAIVHRSAEVQVDSDSDDDSNEARDEEEAEVGDKDQ
VQEEAEPEEHSKLDELKLDFLKVSERLGVLLEKTTLIMERDSEQESKRQL
SSLSPPYNPHPRAESAQLREDKESVNSPNFDEYANVIRRYPNSSETSNPS
QNSNSWDWEASPTGSNPHPDYNKYYQRIGRGENMLNSVIKALRKDASFAD
LGKEETAVNETAEGMGGDKLLYKEQASEAAGISNLMKRQPLCLEDNYPVM
SNLFYSNPIMEYAEETEVRQNGNESMSKVEIRNSEIKCLKKPNAGQVRDM
VAQLQNTIDSNRQDSQTAHVIAARSHSRLNNNFHHLEGTSSNPSPTYSIP
HRSSAQFGLPERHIPKDAYFHELPHRPPIPQTPQRRLHSGYVPNASLYRS
EDLYVGRIPHPNAPPRQVDYVDAVAYRPLQSPTFQAIVPPHVNQRPRNWP
HPNLPSNEIDLDELSAVGLYNNVSSLVASFLDH
BO05483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-PB | 927 | CG12342-PB | 1..927 | 1..927 | 4877 | 100 | Plus |
| dgo-PA | 927 | CG12342-PA | 1..927 | 1..927 | 4877 | 100 | Plus |
| CG42534-PD | 1430 | CG42534-PD | 97..615 | 18..512 | 236 | 22.1 | Plus |
| CG42534-PC | 1555 | CG42534-PC | 222..740 | 18..512 | 236 | 22.1 | Plus |
| Ank2-PN | 1159 | CG34416-PN | 438..665 | 27..261 | 218 | 31.1 | Plus |
