Clone BO05503 Report

Search the DGRC for BO05503

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:55
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptSse-RA
Protein status:BO05503.pep: validated full length
Sequenced Size:1936

Clone Sequence Records

BO05503.3prime Sequence

958 bp (857 high quality bases) assembled on 2005-12-02

> BO05503.3prime
ATGGTCTAGAAAGCTTGCTAAAGGCAGCTTTTCCACGGCCAAATTCCATG
CGGGAAGTCCGCGGCACACGTAAATGCAGCAGTTGTAGATATTCGGCTCC
ACTTTTCCTTGCTGTACGAGAGATAGGATAGAGCACAGGCTGCCCAGATG
GTAGTTGGGTTGATCGTTCATGGTGGGCGTGGTTTCATCTTTTCCTTTTA
TAATGCCATTTTTGAGCCAAGGCACCCGATCAATATGTGTCCACGGAATC
ACTTTGTTATCCCCCGGGGCCAACCAACGACTCAATATTGTCACCGAAAC
AGTATCCATATTACCATCCAAGGCGGGCATGAGAGTACCAACTATCGAAG
GACACAGAGCTCCATGGTAATAATCATGGGCTCCATACAATGCGCTGTAC
AGGCCCGTGCCCAACATGCGTGTAGAATCGCAGCCGAATAGAAAAACAAC
GCTGCGTACCCGAGCCCGGCAAATTATGCGACCATTGACGTACTGCAGCC
CAGAACCGTGACCTGCGTATACAAAGCAATCCGCCTGTAGCGCCTGTTTC
ACCATCACCTCCTCATTGGGCACGGTTTCAAAAAGATGCTGCCACTGGGA
GAGCCAGTACTCAAAAAAGCTACGCAGCCTGCGGCCGGAGTTGACCAAAT
CCGCATCTGGGTTTATTACACACATGCCACGTTTAATATTTGTTGTGTAG
TAGCCATGCTTTATGTTTGATTTGTGATTCTGGAACAAGCGCCATAGGCA
ATGCAGTGATTTGACGCGGGAGAATTCCTGCACGGTGACTAGTTGTTCCC
AATGGAGGTGGTCTAGACGCTCATCGACTACCAGGATGATGGGAAATCTT
CTGCTCGCCAGGGGCTGACGCTCCTCCACTTCCGCCCAGTCGCTGGCCAA
ACCCTTAAGCAATTCGTATGCCGACTGGATCTCATTTTCGTTGCTCGACA
GCTCATAG

BO05503.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10583-PA 1905 Sse-RA 963..1902 958..19 4700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-RA 2177 CG10583-RA 1056..1995 958..19 4700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5660113..5660439 194..520 1635 100 Plus
3L 28110227 3L 5660497..5660797 521..821 1505 100 Plus
3L 28110227 3L 5659882..5660059 19..196 890 100 Plus
3L 28110227 3L 5660850..5660988 820..958 695 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:40:57 has no hits.

BO05503.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:35 Download gff for BO05503.3prime
Subject Subject Range Query Range Percent Splice Strand
Sse-PA 963..1905 18..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:59 Download gff for BO05503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10583-PA 963..1905 18..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:19 Download gff for BO05503.3prime
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1056..2000 12..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:06 Download gff for BO05503.3prime
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1056..2000 12..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:06 Download gff for BO05503.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5660114..5660439 195..520 100 <- Plus
3L 5659877..5660057 12..194 98 <- Plus
3L 5660497..5660795 521..819 100 <- Plus
3L 5660850..5660988 820..958 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:19 Download gff for BO05503.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5652977..5653157 12..194 98 <- Plus
arm_3L 5653214..5653539 195..520 100 <- Plus
arm_3L 5653597..5653895 521..819 100 <- Plus
arm_3L 5653950..5654088 820..958 100   Plus

BO05503.5prime Sequence

933 bp (752 high quality bases) assembled on 2005-12-02

> BO05503.5prime
GAAGTTATCAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGG
CCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTA
CTGCGCGCCGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTA
CTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCG
AATCGGCGGAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAA
TCAGCCACTAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCA
GAACATCATCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCAAAGA
AGCCAATCAACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAG
GATCCTACAGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCC
CCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCA
CCTACTCCGTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTC
ACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAA
AATTTCCAACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGG
TGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCACTCAACATGAAAGGT
AAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAATGGTTTTGACACTTT
TCAGCAAAAACTACTTGCCGACTTTCGGGACATAATATCTCCATATTCCT
TTCTGTTCTTTGGCAAAAGATATGACTGCACTGTTGTTCAAAAACAAATC
AAAGCCACCTATACTCGTGTTGACGATTTCTGTCTGCTTAATCATTGGGG
TACCCACCAACGTGTTTTACTTTCCCCAGCGGC

BO05503.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10583-PA 1905 Sse-RA 1..917 17..933 4535 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-RA 2177 CG10583-RA 94..1010 17..933 4555 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5661267..5661740 757..284 2370 100 Minus
3L 28110227 3L 5661802..5661998 285..89 985 100 Minus
3L 28110227 3L 5661034..5661209 933..758 850 98.9 Minus
3L 28110227 3L 5662082..5662154 89..17 365 100 Minus
Blast to na_te.dros performed 2015-02-11 02:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 2503..2540 758..721 109 76.3 Minus

BO05503.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:36 Download gff for BO05503.5prime
Subject Subject Range Query Range Percent Splice Strand
Sse-PA 1..917 17..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:00 Download gff for BO05503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10583-PA 1..917 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:57 Download gff for BO05503.5prime
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 87..1010 7..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:14 Download gff for BO05503.5prime
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 87..1010 7..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:14 Download gff for BO05503.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5661034..5661209 758..933 98 <- Minus
3L 5661267..5661738 286..757 100 <- Minus
3L 5661802..5661997 90..285 100 <- Minus
3L 5662082..5662161 7..89 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:57 Download gff for BO05503.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5654134..5654309 758..933 98 <- Minus
arm_3L 5654367..5654838 286..757 100 <- Minus
arm_3L 5654902..5655097 90..285 100 <- Minus
arm_3L 5655182..5655261 7..89 95   Minus

BO05503.complete Sequence

1936 bp (1936 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630067

> BO05503.complete
GAAGTTATCAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGG
CCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTA
CTGCGCGCCGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTA
CTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCG
AATCGGCGGAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAA
TCAGCCACTAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCA
GAACATCATCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCAAAGA
AGCCAATCAACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAG
GATCCTACAGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCC
CCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCA
CCTACTCCGTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTC
ACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAA
AATTTCCAACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGG
TGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCACTCAACATGAAAGGT
AAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAATGGTTTTGACACTTT
TCAGCAAAAACTACTTGCCGACTTTCGGGACATAATATCTCCATATTCCT
TTCTGTTCTTTGGCAAAAGATATGACTGCACTGTTGTTCAAAAACAAATC
AAAGCCACCTATACTCGTGTTGACGATTTCTGTCTGCTTAATCAATGGGG
TACCCACCAACGTGTTTTACTTTCCCAAGCGGCCTCGCATGCCAATCGAC
TGGAAATCGCAGATCTCAAACTCATCTGCTATGAGCTGTCGAGCAACGAA
AATGAGATCCAGTCGGCATACGAATTGCTTAAGGGTTTGGCCAGCGACTG
GGCGGAAGTGGAGGAGCGTCAGCCCCTGGCGAGCAGAAGATTTCCCATCA
TCCTGGTAGTCGATGAGCGTCTAGACCACCTCCATTGGGAACAACTAGTC
ACCGTGCAGGAATTCTCCCGCGTCAAATCACTGCATTGCCTATGGCGCTT
GTTCCAGAATCACAAATCAAACATAAAGCATGGCTACTACACAACAAATA
TTAAACGTGGCATGTGTGTAATAAACCCAGATGCGGATTTGGTCAACTCC
GGCCGCAGGCTGCGTAGCTTTTTTGAGTACTGGCTCTCCCAGTGGCAGCA
TCTTTTTGAAACCGTGCCCAATGAGGAGGTGATGGTGAAACAGGCGCTAC
AGGCGGATTGCTTTGTATACGCAGGTCACGGTTCTGGGCTGCAGTACGTC
AATGGTCGCATAATTTGCCGGGCTCGGGTACGCAGCGTTGTTTTTCTATT
CGGCTGCGATTCTACACGCATGTTGGGCACGGGCCTGTACAGCGCATTGT
ATGGAGCCCATGATTATTACCATGGAGCTCTGTGTCCTTCGATAGTTGGT
ACTCTCATGCCCGCCTTGGATGGTAATATGGATACTGTTTCGGTGACAAT
ATTGAGTCGTTGGTTGGCCCCGGGGGATAACAAAGTGATTCCGTGGACAC
ATATTGATCGGGTGCCTTGGCTCAAAAATGGCATTATAAAAGGAAAAGAT
GAAACCACGCCCACCATGAACGATCAACCCAACTACCATCTGGGCAGCCT
GTGCTCTATCCTATCTCTCGTACAGCAAGGAAAAGTGGAGCCGAATATCT
ACAACTGCTGCATTTACGTGTGCCGCGGACTTCCCGCATGGAATTTGGCC
GTGGAAAAGCTGCCTTTAGCAAGCTTTCTAGACCAT

BO05503.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-RA 1905 CG10583-PA 1..1902 17..1918 9510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-RA 2177 CG10583-RA 94..1995 17..1918 9510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5661267..5661740 757..284 2370 100 Minus
3L 28110227 3L 5660850..5661209 1117..758 1800 100 Minus
3L 28110227 3L 5660113..5660439 1743..1417 1635 100 Minus
3L 28110227 3L 5660497..5660797 1416..1116 1505 100 Minus
3L 28110227 3L 5661802..5661998 285..89 985 100 Minus
3L 28110227 3L 5659882..5660059 1918..1741 890 100 Minus
3L 28110227 3L 5662082..5662154 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:50:58 has no hits.

BO05503.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:41 Download gff for BO05503.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1..1905 17..1919 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:08 Download gff for BO05503.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 81..1994 7..1925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:21 Download gff for BO05503.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 94..1995 17..1920 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:41 Download gff for BO05503.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 81..1994 7..1925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:02 Download gff for BO05503.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 94..1995 17..1920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:02 Download gff for BO05503.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5660850..5661209 758..1117 100 <- Minus
3L 5660497..5660795 1118..1416 100 <- Minus
3L 5659878..5660057 1743..1920 98 <- Minus
3L 5660114..5660439 1417..1742 100 <- Minus
3L 5661267..5661738 286..757 100 <- Minus
3L 5661802..5661997 90..285 100 <- Minus
3L 5662082..5662154 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:21 Download gff for BO05503.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5655182..5655254 17..89 100   Minus
arm_3L 5652978..5653157 1743..1920 98 <- Minus
arm_3L 5653214..5653539 1417..1742 100 <- Minus
arm_3L 5653597..5653895 1118..1416 100 <- Minus
arm_3L 5653950..5654309 758..1117 100 <- Minus
arm_3L 5654367..5654838 286..757 100 <- Minus
arm_3L 5654902..5655097 90..285 100 <- Minus

BO05503.pep Sequence

Translation from 16 to 1936

> BO05503.pep
MLETGDEAEMLAGFTSSDVGPEAKEYNLLRADEEYRNGNVEHSIYYQVKA
QFQSTDLRYLTESAELENQRPTAEELIKSATKLEKKDYKSKKFLQNIIKY
LQQMEQEKQPKKPINEIPEYLDFLDDVQDPTEGLTRISEKCNSLPQEWCV
LQLCKSFNPATTYSVFNEIIASDGAIYLTLLRHCRSSQLGPICLKISNEN
TANLFREYSTLVERFRRVVTVDPLNMKGKEAKQKYWEELNGFDTFQQKLL
ADFRDIISPYSFLFFGKRYDCTVVQKQIKATYTRVDDFCLLNQWGTHQRV
LLSQAASHANRLEIADLKLICYELSSNENEIQSAYELLKGLASDWAEVEE
RQPLASRRFPIILVVDERLDHLHWEQLVTVQEFSRVKSLHCLWRLFQNHK
SNIKHGYYTTNIKRGMCVINPDADLVNSGRRLRSFFEYWLSQWQHLFETV
PNEEVMVKQALQADCFVYAGHGSGLQYVNGRIICRARVRSVVFLFGCDST
RMLGTGLYSALYGAHDYYHGALCPSIVGTLMPALDGNMDTVSVTILSRWL
APGDNKVIPWTHIDRVPWLKNGIIKGKDETTPTMNDQPNYHLGSLCSILS
LVQQGKVEPNIYNCCIYVCRGLPAWNLAVEKLPLASFLDH

BO05503.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-PA 634 CG10583-PA 1..634 1..634 3367 100 Plus