Clone Sequence Records
BO05503.3prime Sequence
958 bp (857 high quality bases) assembled on 2005-12-02
> BO05503.3prime
ATGGTCTAGAAAGCTTGCTAAAGGCAGCTTTTCCACGGCCAAATTCCATG
CGGGAAGTCCGCGGCACACGTAAATGCAGCAGTTGTAGATATTCGGCTCC
ACTTTTCCTTGCTGTACGAGAGATAGGATAGAGCACAGGCTGCCCAGATG
GTAGTTGGGTTGATCGTTCATGGTGGGCGTGGTTTCATCTTTTCCTTTTA
TAATGCCATTTTTGAGCCAAGGCACCCGATCAATATGTGTCCACGGAATC
ACTTTGTTATCCCCCGGGGCCAACCAACGACTCAATATTGTCACCGAAAC
AGTATCCATATTACCATCCAAGGCGGGCATGAGAGTACCAACTATCGAAG
GACACAGAGCTCCATGGTAATAATCATGGGCTCCATACAATGCGCTGTAC
AGGCCCGTGCCCAACATGCGTGTAGAATCGCAGCCGAATAGAAAAACAAC
GCTGCGTACCCGAGCCCGGCAAATTATGCGACCATTGACGTACTGCAGCC
CAGAACCGTGACCTGCGTATACAAAGCAATCCGCCTGTAGCGCCTGTTTC
ACCATCACCTCCTCATTGGGCACGGTTTCAAAAAGATGCTGCCACTGGGA
GAGCCAGTACTCAAAAAAGCTACGCAGCCTGCGGCCGGAGTTGACCAAAT
CCGCATCTGGGTTTATTACACACATGCCACGTTTAATATTTGTTGTGTAG
TAGCCATGCTTTATGTTTGATTTGTGATTCTGGAACAAGCGCCATAGGCA
ATGCAGTGATTTGACGCGGGAGAATTCCTGCACGGTGACTAGTTGTTCCC
AATGGAGGTGGTCTAGACGCTCATCGACTACCAGGATGATGGGAAATCTT
CTGCTCGCCAGGGGCTGACGCTCCTCCACTTCCGCCCAGTCGCTGGCCAA
ACCCTTAAGCAATTCGTATGCCGACTGGATCTCATTTTCGTTGCTCGACA
GCTCATAG
BO05503.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10583-PA | 1905 | Sse-RA | 963..1902 | 958..19 | 4700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-RA | 2177 | CG10583-RA | 1056..1995 | 958..19 | 4700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5660113..5660439 | 194..520 | 1635 | 100 | Plus |
3L | 28110227 | 3L | 5660497..5660797 | 521..821 | 1505 | 100 | Plus |
3L | 28110227 | 3L | 5659882..5660059 | 19..196 | 890 | 100 | Plus |
3L | 28110227 | 3L | 5660850..5660988 | 820..958 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:40:57 has no hits.
BO05503.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:35 Download gff for
BO05503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-PA | 963..1905 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:59 Download gff for
BO05503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10583-PA | 963..1905 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:19 Download gff for
BO05503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 1056..2000 | 12..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:06 Download gff for
BO05503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 1056..2000 | 12..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:06 Download gff for
BO05503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5660114..5660439 | 195..520 | 100 | <- | Plus |
3L | 5659877..5660057 | 12..194 | 98 | <- | Plus |
3L | 5660497..5660795 | 521..819 | 100 | <- | Plus |
3L | 5660850..5660988 | 820..958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:19 Download gff for
BO05503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5652977..5653157 | 12..194 | 98 | <- | Plus |
arm_3L | 5653214..5653539 | 195..520 | 100 | <- | Plus |
arm_3L | 5653597..5653895 | 521..819 | 100 | <- | Plus |
arm_3L | 5653950..5654088 | 820..958 | 100 | | Plus |
BO05503.5prime Sequence
933 bp (752 high quality bases) assembled on 2005-12-02
> BO05503.5prime
GAAGTTATCAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGG
CCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTA
CTGCGCGCCGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTA
CTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCG
AATCGGCGGAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAA
TCAGCCACTAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCA
GAACATCATCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCAAAGA
AGCCAATCAACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAG
GATCCTACAGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCC
CCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCA
CCTACTCCGTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTC
ACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAA
AATTTCCAACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGG
TGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCACTCAACATGAAAGGT
AAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAATGGTTTTGACACTTT
TCAGCAAAAACTACTTGCCGACTTTCGGGACATAATATCTCCATATTCCT
TTCTGTTCTTTGGCAAAAGATATGACTGCACTGTTGTTCAAAAACAAATC
AAAGCCACCTATACTCGTGTTGACGATTTCTGTCTGCTTAATCATTGGGG
TACCCACCAACGTGTTTTACTTTCCCCAGCGGC
BO05503.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10583-PA | 1905 | Sse-RA | 1..917 | 17..933 | 4535 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-RA | 2177 | CG10583-RA | 94..1010 | 17..933 | 4555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5661267..5661740 | 757..284 | 2370 | 100 | Minus |
3L | 28110227 | 3L | 5661802..5661998 | 285..89 | 985 | 100 | Minus |
3L | 28110227 | 3L | 5661034..5661209 | 933..758 | 850 | 98.9 | Minus |
3L | 28110227 | 3L | 5662082..5662154 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 02:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 2503..2540 | 758..721 | 109 | 76.3 | Minus |
BO05503.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:36 Download gff for
BO05503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-PA | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:00 Download gff for
BO05503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10583-PA | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:57 Download gff for
BO05503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 87..1010 | 7..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:14 Download gff for
BO05503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 87..1010 | 7..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:14 Download gff for
BO05503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5661034..5661209 | 758..933 | 98 | <- | Minus |
3L | 5661267..5661738 | 286..757 | 100 | <- | Minus |
3L | 5661802..5661997 | 90..285 | 100 | <- | Minus |
3L | 5662082..5662161 | 7..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:57 Download gff for
BO05503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5654134..5654309 | 758..933 | 98 | <- | Minus |
arm_3L | 5654367..5654838 | 286..757 | 100 | <- | Minus |
arm_3L | 5654902..5655097 | 90..285 | 100 | <- | Minus |
arm_3L | 5655182..5655261 | 7..89 | 95 | | Minus |
BO05503.complete Sequence
1936 bp (1936 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630067
> BO05503.complete
GAAGTTATCAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGG
CCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTA
CTGCGCGCCGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTA
CTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCG
AATCGGCGGAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAA
TCAGCCACTAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCA
GAACATCATCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCAAAGA
AGCCAATCAACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAG
GATCCTACAGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCC
CCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCA
CCTACTCCGTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTC
ACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAA
AATTTCCAACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGG
TGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCACTCAACATGAAAGGT
AAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAATGGTTTTGACACTTT
TCAGCAAAAACTACTTGCCGACTTTCGGGACATAATATCTCCATATTCCT
TTCTGTTCTTTGGCAAAAGATATGACTGCACTGTTGTTCAAAAACAAATC
AAAGCCACCTATACTCGTGTTGACGATTTCTGTCTGCTTAATCAATGGGG
TACCCACCAACGTGTTTTACTTTCCCAAGCGGCCTCGCATGCCAATCGAC
TGGAAATCGCAGATCTCAAACTCATCTGCTATGAGCTGTCGAGCAACGAA
AATGAGATCCAGTCGGCATACGAATTGCTTAAGGGTTTGGCCAGCGACTG
GGCGGAAGTGGAGGAGCGTCAGCCCCTGGCGAGCAGAAGATTTCCCATCA
TCCTGGTAGTCGATGAGCGTCTAGACCACCTCCATTGGGAACAACTAGTC
ACCGTGCAGGAATTCTCCCGCGTCAAATCACTGCATTGCCTATGGCGCTT
GTTCCAGAATCACAAATCAAACATAAAGCATGGCTACTACACAACAAATA
TTAAACGTGGCATGTGTGTAATAAACCCAGATGCGGATTTGGTCAACTCC
GGCCGCAGGCTGCGTAGCTTTTTTGAGTACTGGCTCTCCCAGTGGCAGCA
TCTTTTTGAAACCGTGCCCAATGAGGAGGTGATGGTGAAACAGGCGCTAC
AGGCGGATTGCTTTGTATACGCAGGTCACGGTTCTGGGCTGCAGTACGTC
AATGGTCGCATAATTTGCCGGGCTCGGGTACGCAGCGTTGTTTTTCTATT
CGGCTGCGATTCTACACGCATGTTGGGCACGGGCCTGTACAGCGCATTGT
ATGGAGCCCATGATTATTACCATGGAGCTCTGTGTCCTTCGATAGTTGGT
ACTCTCATGCCCGCCTTGGATGGTAATATGGATACTGTTTCGGTGACAAT
ATTGAGTCGTTGGTTGGCCCCGGGGGATAACAAAGTGATTCCGTGGACAC
ATATTGATCGGGTGCCTTGGCTCAAAAATGGCATTATAAAAGGAAAAGAT
GAAACCACGCCCACCATGAACGATCAACCCAACTACCATCTGGGCAGCCT
GTGCTCTATCCTATCTCTCGTACAGCAAGGAAAAGTGGAGCCGAATATCT
ACAACTGCTGCATTTACGTGTGCCGCGGACTTCCCGCATGGAATTTGGCC
GTGGAAAAGCTGCCTTTAGCAAGCTTTCTAGACCAT
BO05503.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-RA | 1905 | CG10583-PA | 1..1902 | 17..1918 | 9510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-RA | 2177 | CG10583-RA | 94..1995 | 17..1918 | 9510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5661267..5661740 | 757..284 | 2370 | 100 | Minus |
3L | 28110227 | 3L | 5660850..5661209 | 1117..758 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 5660113..5660439 | 1743..1417 | 1635 | 100 | Minus |
3L | 28110227 | 3L | 5660497..5660797 | 1416..1116 | 1505 | 100 | Minus |
3L | 28110227 | 3L | 5661802..5661998 | 285..89 | 985 | 100 | Minus |
3L | 28110227 | 3L | 5659882..5660059 | 1918..1741 | 890 | 100 | Minus |
3L | 28110227 | 3L | 5662082..5662154 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:50:58 has no hits.
BO05503.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:41 Download gff for
BO05503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 1..1905 | 17..1919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:08 Download gff for
BO05503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 81..1994 | 7..1925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:21 Download gff for
BO05503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 94..1995 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:41 Download gff for
BO05503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 81..1994 | 7..1925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:02 Download gff for
BO05503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 94..1995 | 17..1920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:02 Download gff for
BO05503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5660850..5661209 | 758..1117 | 100 | <- | Minus |
3L | 5660497..5660795 | 1118..1416 | 100 | <- | Minus |
3L | 5659878..5660057 | 1743..1920 | 98 | <- | Minus |
3L | 5660114..5660439 | 1417..1742 | 100 | <- | Minus |
3L | 5661267..5661738 | 286..757 | 100 | <- | Minus |
3L | 5661802..5661997 | 90..285 | 100 | <- | Minus |
3L | 5662082..5662154 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:21 Download gff for
BO05503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5655182..5655254 | 17..89 | 100 | | Minus |
arm_3L | 5652978..5653157 | 1743..1920 | 98 | <- | Minus |
arm_3L | 5653214..5653539 | 1417..1742 | 100 | <- | Minus |
arm_3L | 5653597..5653895 | 1118..1416 | 100 | <- | Minus |
arm_3L | 5653950..5654309 | 758..1117 | 100 | <- | Minus |
arm_3L | 5654367..5654838 | 286..757 | 100 | <- | Minus |
arm_3L | 5654902..5655097 | 90..285 | 100 | <- | Minus |
BO05503.pep Sequence
Translation from 16 to 1936
> BO05503.pep
MLETGDEAEMLAGFTSSDVGPEAKEYNLLRADEEYRNGNVEHSIYYQVKA
QFQSTDLRYLTESAELENQRPTAEELIKSATKLEKKDYKSKKFLQNIIKY
LQQMEQEKQPKKPINEIPEYLDFLDDVQDPTEGLTRISEKCNSLPQEWCV
LQLCKSFNPATTYSVFNEIIASDGAIYLTLLRHCRSSQLGPICLKISNEN
TANLFREYSTLVERFRRVVTVDPLNMKGKEAKQKYWEELNGFDTFQQKLL
ADFRDIISPYSFLFFGKRYDCTVVQKQIKATYTRVDDFCLLNQWGTHQRV
LLSQAASHANRLEIADLKLICYELSSNENEIQSAYELLKGLASDWAEVEE
RQPLASRRFPIILVVDERLDHLHWEQLVTVQEFSRVKSLHCLWRLFQNHK
SNIKHGYYTTNIKRGMCVINPDADLVNSGRRLRSFFEYWLSQWQHLFETV
PNEEVMVKQALQADCFVYAGHGSGLQYVNGRIICRARVRSVVFLFGCDST
RMLGTGLYSALYGAHDYYHGALCPSIVGTLMPALDGNMDTVSVTILSRWL
APGDNKVIPWTHIDRVPWLKNGIIKGKDETTPTMNDQPNYHLGSLCSILS
LVQQGKVEPNIYNCCIYVCRGLPAWNLAVEKLPLASFLDH
BO05503.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-PA | 634 | CG10583-PA | 1..634 | 1..634 | 3367 | 100 | Plus |