Clone BO05504 Report

Search the DGRC for BO05504

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:55
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG10889-RA
Protein status:BO05504.pep: validated full length
Sequenced Size:1654

Clone Sequence Records

BO05504.3prime Sequence

904 bp (872 high quality bases) assembled on 2005-12-02

> BO05504.3prime
ATGGTCTAGAAAGCTTGCATTATGCGGAAATAAATTAAGAATAGCCGCGC
ATATGGTCTTGGCGTCGGTCTCCTCCGGATAGAGCTGCAGTACGGCATGC
ACCTGGTGCGGTGGGAAAAGGCTGCCCAGGTGATAGCGCAGCAATCGGCG
CTGCTCCTCCCGCGGAAGCTGCTGCGAGGCGTGCAGCTCCTCGTTGATGC
GCGAATCGGAGGCAGACAGATGGGCGAAGTTGTGAGCGGGCAGTGGCAGA
CCCAGTCCCTGATCCGTGACCGGGGCGGATGGCGTGCGCGTCAGATACTG
GTGGTGATAGTTGGTGCTGGAGTTGGACTGTTGATGCTGCTGCTGTGCCT
GGTGTTGTTGTTGCTGGAGGGGAGCACTGTAGGTGGGCACCAGCAGGCGG
TAGGCGGGCGGCGGTTGTTGGCGCTGCAGCTTCTTGTGGCGATTGGGCTG
GCTGGATTCCACGGCACCCTCTGAAAGATCCATTTGAGCGGAGAAGCCCT
GACATACCTGCTCGATGGTATTTGACTTGGTGCGCCCCAGCGGCTCCCGG
CTAATCAGTGAGTTGATCTTAACATTGTTATTATTGCCACCCGGACTGAC
CAACTGTTGGCCACCGTTCGTGTGCAGGGGCGCGCTGTGGGAGGCCTGCA
GCGGGAGGCGCTGCAGCAGTGGCGCCTGATTGTGATGCCGGAACTTGCAC
TTCTGGCCGTAGGTGCACTTCTTGCCGTACGGACACAACTGCTGCGCATC
CGCCATTTTCTGCTGCGTCTGCGAGCACAGGAAGAGGTCCAGATTTGGAC
CCGATCTGCCCAGCGGATCGTCGGGTGGCATGAAGATGTCATTTACAAAA
GAGTACATCAACAGGCGCTCCTGCACCACGCGCCTAAACTCGTTACTCTC
CAGG

BO05504.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 1623 CG10889-RA 735..1620 904..19 4430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 2176 CG10889-RA 873..1758 904..19 4430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20034299..20035184 19..904 4430 100 Plus
Blast to na_te.dros performed 2015-02-04 19:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1591 368..290 180 73.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6857 431..294 175 63.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2466 450..288 171 60 Minus
roo 9092 roo DM_ROO 9092bp 1073..1163 366..275 169 70.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2406 366..294 166 73 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6933 450..254 166 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2551 454..297 165 61.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2251..2394 434..294 162 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6917 450..294 162 60 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6805 366..292 160 72 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6838 366..292 160 72 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6946 438..308 158 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6794 370..294 152 70.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6819 366..299 152 73.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6817 366..292 151 70.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1606 385..295 148 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2502 454..275 148 59.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2511 366..288 146 70.9 Minus
roo 9092 roo DM_ROO 9092bp 1115..1152 366..329 145 86.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6851 366..288 144 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2538 454..288 139 57.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6836..6900 366..299 134 70.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2417 366..292 131 67.1 Minus
roo 9092 roo DM_ROO 9092bp 1060..1125 367..299 130 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2613..2689 369..290 123 67.1 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 522..599 372..295 120 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1630 369..295 119 63.6 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6059..6097 370..332 114 76.9 Minus

BO05504.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:37 Download gff for BO05504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 735..1623 18..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:01 Download gff for BO05504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 735..1623 18..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:29 Download gff for BO05504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 872..1763 12..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:23 Download gff for BO05504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 873..1764 12..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:23 Download gff for BO05504.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20034293..20035184 12..904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:29 Download gff for BO05504.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15860015..15860906 12..904 99   Plus

BO05504.5prime Sequence

928 bp (780 high quality bases) assembled on 2005-11-29

> BO05504.5prime
GAAGTTATCAGTCGACATGCGCATCAAGATGGATTGCGAAGTGCAGGAGC
AACACAAACAGCAGCAACAACAACAGCAGGTCCACCAGCAACAACAAAAA
CACGGCAGCAGCAACAAGTTGCCAGTGAGAAAGCAGGAAAGCTGCTCCGA
CGACGATGAGAGCCAGAGTCCCAGCCGCACAACGGAGCGCCAGAACCTGG
AGTTCGCCAAAAAGCTAGGCTACAGCGAACAGTCCATCCATTCGGCGCTG
ACGCGCCTCGGCTCGGAAGCCAAGCAGAACGAGCTGCTGGCGGAGCTGAT
CAAGCTGACGGCCGATGCACCGCGGCCCGCCCACATAGGCGGAGGCGGCA
GTCCATCCAGCATGACCAGCACTCTGTCCTCCCCGACCGGCGGTAGCAAC
AGCTCTGGCTTGAGACACATCGTAATCGATGGCAGTAATGTCGCCCTTTC
TCACGGCAACAATCTAGTATTCTCTTGCCGCGGCATTCGCATCTGTGTGG
ACTGGTTCCGGCAGCGTGGCCATCGCGACATCACCGCTTTCGTGCCCAAC
TGGCGCAAGGAGATGGCGAACAACAACATAGCCGACCAGGAGCTGCTCTA
CGAGCTGGAGCACGAAAGATACCTGGTGTTCACGCCATCGCGACATCTGG
ATGGCAAGCGTGTGTCCTGCTACGATGATCGCTTCATACTCAAGCTGGCA
GTGGAAACTGACGGCATTGTAGTCTCCAACGACAACTACAGGGATCTGAT
CCTGGAGAGTAACGAGTTTAGGCGCGTGGTGCAGGAGCGCCTGTTGATGT
ACTCTTTTGTAAATGACATCTTCATGCCACCCGACGATCCGCTGGGCAGA
TCGGGGTCAAATCTGGACCTCTTCCTGTGCTCGCAGACGCAGCAGAAAAT
GGCGGATGCGCAGCAGTTGTGTCCGTAC

BO05504.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 1623 CG10889-RA 1..912 17..928 4510 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 2176 CG10889-RA 139..1050 17..928 4530 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20035007..20035918 928..17 4530 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 01:57:04 has no hits.

BO05504.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:38 Download gff for BO05504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:03 Download gff for BO05504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:10:33 Download gff for BO05504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 130..1049 8..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:30:21 Download gff for BO05504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 131..1050 8..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:30:21 Download gff for BO05504.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20035007..20035926 8..928 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:10:33 Download gff for BO05504.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15860729..15861648 8..928 99   Minus

BO05504.complete Sequence

1654 bp (1654 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630068

> BO05504.complete
GAAGTTATCAGTCGACATGCGCATCAAGATGGATTGCGAAGTGCAGGAGC
AACACAAACAGCAGCAACAACAACAGCAGGTCCACCAGCAACAACAAAAA
CACGGCAGCAGCAACAAGTTGCCAGTGAGAAAGCAGGAAAGCTGCTCCGA
CGACGATGAGAGCCAGAGTCCCAGCCGCACAACGGAGCGCCAGAACCTGG
AGTTCGCCAAAAAGCTAGGCTACAGCGAACAGTCCATCCATTCGGCGCTG
ACGCGCCTCGGCTCGGAAGCCAAGCAGAACGAGCTGCTGGCGGAGCTGAT
CAAGCTGACGGCCGATGCACCGCGGCCCGCCCACATAGGCGGAGGCGGCA
GTCCATCCAGCATGACCAGCACTCTGTCCTCCCCGACCGGCGGTAGCAAC
AGCTCTGGCTTGAGACACATCGTAATCGATGGCAGTAATGTCGCCCTTTC
TCACGGCAACAATCTAGTATTCTCTTGCCGCGGCATTCGCATCTGTGTGG
ACTGGTTCCGGCAGCGTGGCCATCGCGACATCACCGCTTTCGTGCCCAAC
TGGCGCAAGGAGATGGCGAACAACAACATAGCCGACCAGGAGCTGCTCTA
CGAGCTGGAGCACGAAAGATACCTGGTGTTCACGCCATCGCGACATCTGG
ATGGCAAGCGTGTGTCCTGCTACGATGATCGCTTCATACTCAAGCTGGCA
GTGGAAACTGACGGCATTGTAGTCTCCAACGACAACTACAGGGATCTGAT
CCTGGAGAGTAACGAGTTTAGGCGCGTGGTGCAGGAGCGCCTGTTGATGT
ACTCTTTTGTAAATGACATCTTCATGCCACCCGACGATCCGCTGGGCAGA
TCGGGTCCAAATCTGGACCTCTTCCTGTGCTCGCAGACGCAGCAGAAAAT
GGCGGATGCGCAGCAGTTGTGTCCGTACGGCAAGAAGTGCACCTACGGCC
AGAAGTGCAAGTTCCGGCATCACAATCAGGCGCCACTGCTGCAGCGCCTC
CCGCTGCAGGCCTCCCACAGCGCGCCCCTGCACACGAACGGTGGCCAACA
GTTGGTCAGTCCGGGTGGCAATAATAACAATGTTAAGATCAACTCACTGA
TTAGCCGGGAGCCGCTGGGGCGCACCAAGTCAAATACCATCGAGCAGGTA
TGTCAGGGCTTCTCCGCTCAAATGGATCTTTCAGAGGGTGCCGTGGAATC
CAGCCAGCCCAATCGCCACAAGAAGCTGCAGCGCCAACAACCGCCGCCCG
CCTACCGCCTGCTGGTGCCCACCTACAGTGCTCCCCTCCAGCAACAACAA
CACCAGGCACAGCAGCAGCATCAACAGTCCAACTCCAGCACCAACTATCA
CCACCAGTATCTGACGCGCACGCCATCCGCCCCGGTCACGGATCAGGGAC
TGGGTCTGCCACTGCCCGCTCACAACTTCGCCCATCTGTCTGCCTCCGAT
TCGCGCATCAACGAGGAGCTGCACGCCTCGCAGCAGCTTCCGCGGGAGGA
GCAGCGCCGATTGCTGCGCTATCACCTGGGCAGCCTTTTCCCACCGCACC
AGGTGCATGCCGTACTGCAGCTCTATCCGGAGGAGACCGACGCCAAGACC
ATATGCGCGGCTATTCTTAATTTATTTCCGCATAATGCAAGCTTTCTAGA
CCAT

BO05504.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 1623 CG10889-PA 1..1620 17..1636 8100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 2176 CG10889-RA 139..1758 17..1636 8100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20034299..20035918 1636..17 8100 100 Minus
Blast to na_te.dros performed 2014-11-28 00:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1591 1287..1365 180 73.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6857 1224..1361 175 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2466 1205..1367 171 60 Plus
roo 9092 roo DM_ROO 9092bp 1073..1163 1289..1380 169 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2406 1289..1361 166 73 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6933 1205..1401 166 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2551 1201..1358 165 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6917 1205..1361 162 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2251..2394 1221..1361 162 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6805 1289..1363 160 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6838 1289..1363 160 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6946 1217..1347 158 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6794 1285..1361 152 70.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6819 1289..1356 152 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6817 1289..1363 151 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1606 1270..1360 148 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2502 1201..1380 148 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2511 1289..1367 146 70.9 Plus
roo 9092 roo DM_ROO 9092bp 1115..1152 1289..1326 145 86.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6851 1289..1367 144 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2538 1201..1367 139 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6836..6900 1289..1356 134 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2613..2689 1286..1365 123 67.1 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 522..599 1283..1360 120 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1630 1286..1360 119 63.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6059..6097 1285..1323 114 76.9 Plus

BO05504.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:33 Download gff for BO05504.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 1..1623 17..1637 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:47 Download gff for BO05504.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 130..1763 8..1643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:42 Download gff for BO05504.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 138..1757 17..1638 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:33 Download gff for BO05504.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 130..1763 8..1643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:59 Download gff for BO05504.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 139..1758 17..1638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:59 Download gff for BO05504.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20034297..20035918 17..1638 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:42 Download gff for BO05504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15860019..15861640 17..1638 99   Minus

BO05504.pep Sequence

Translation from 16 to 1654

> BO05504.pep
MRIKMDCEVQEQHKQQQQQQQVHQQQQKHGSSNKLPVRKQESCSDDDESQ
SPSRTTERQNLEFAKKLGYSEQSIHSALTRLGSEAKQNELLAELIKLTAD
APRPAHIGGGGSPSSMTSTLSSPTGGSNSSGLRHIVIDGSNVALSHGNNL
VFSCRGIRICVDWFRQRGHRDITAFVPNWRKEMANNNIADQELLYELEHE
RYLVFTPSRHLDGKRVSCYDDRFILKLAVETDGIVVSNDNYRDLILESNE
FRRVVQERLLMYSFVNDIFMPPDDPLGRSGPNLDLFLCSQTQQKMADAQQ
LCPYGKKCTYGQKCKFRHHNQAPLLQRLPLQASHSAPLHTNGGQQLVSPG
GNNNNVKINSLISREPLGRTKSNTIEQVCQGFSAQMDLSEGAVESSQPNR
HKKLQRQQPPPAYRLLVPTYSAPLQQQQHQAQQQHQQSNSSTNYHHQYLT
RTPSAPVTDQGLGLPLPAHNFAHLSASDSRINEELHASQQLPREEQRRLL
RYHLGSLFPPHQVHAVLQLYPEETDAKTICAAILNLFPHNASFLDH

BO05504.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 540 CG10889-PA 1..540 1..540 2846 100 Plus
CG42360-PA 496 CG42360-PA 343..494 133..287 371 49.7 Plus