Clone Sequence Records
BO05505.3prime Sequence
922 bp (860 high quality bases) assembled on 2005-12-02
> BO05505.3prime
ATGGTCTAGAAAGCTTGCGCACATATTCTGCAGCACATTCAGTATGTAGG
CTCCAATGTCCTCGTCCTGGTTGGTCCACGATATCAAAATGTTCTTCTGC
TTGGGATCCTTCTCGTCCTCCTCCACCTTCACCTCAACGGATTCGATGGC
TATGGAGCCGTTCTCCTGCATCGTCACCGTCCAGCCGGCTAGCTTTTCTT
CGAGCAGAGTCTTCAGTCTTTCGCTTGTGCGAATGACCGGTCCGGAGTCG
TCCATTTTGACCTTGGATGTAAATCGCATAACATGTCGATTAATTCCGAT
TTCCTTCAGGGCATCGGTTAGGTTTTGCAGCATTATTCGATTGTCCTTCA
TTACGAGGACGCCATGGATTAGTCGCCGCCTCTTGGGATCCGGTGGCTGG
GCGTTGTAGGACCGGGCCTCTGCTTTAAGCAGGGAAACGGACGCATCTAC
TGGTATCTTCACAGGCGTAGAAATCACACAGGTTTCGCCGTTGGCCGGCA
TGTAGGTTTCCAGGTTGAATTCGTCTTTGATCTTCGAGCGCAGGAACTTC
ATCTTCCCTGCTTCACCATGGACGAGCATGACGTTCTTTGGCTCACAGTT
CTGAATTAGCTGCATAATGCCTTTGGCATCTGCATGGGCCGAGAAGCTCA
TGTACTCCACGGCCATTTTGACCTCGACCACCTGGCGGTTCTCGAACTCC
ACCTTCTTGGCGCCACCGAGAATCTTGTTGCCCACGGTTCCCTGCACACA
GTAGCCGGGCATAATCACCATGTTGTTCTCATTCGGCGCCCACTTCTTGA
AGATCTGCAGGGAAAGACCTGCGTGCAGCATGCCTGGCGTGGCGAACACT
ACCATCGCGCCAGGATTGTCGATGTAGGCCTTGTCAAAGGGCTTGATGTG
CTTGAAGTCGAACATGTTGCGG
BO05505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1972-PA | 1794 | CG1972-RA | 888..1791 | 922..19 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 2043 | CG1972-RA | 1021..1924 | 922..19 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29746791..29747394 | 622..19 | 3020 | 100 | Minus |
| 3R | 32079331 | 3R | 29746436..29746738 | 922..620 | 1515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:41:08 has no hits.
BO05505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:39 Download gff for
BO05505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-PA | 888..1794 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:04 Download gff for
BO05505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-PA | 888..1794 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:21 Download gff for
BO05505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 1021..1929 | 13..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:46 Download gff for
BO05505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 1021..1929 | 13..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:46 Download gff for
BO05505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29746436..29746737 | 621..922 | 100 | -> | Minus |
| 3R | 29746793..29747399 | 13..620 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:21 Download gff for
BO05505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25572158..25572459 | 621..922 | 100 | -> | Minus |
| arm_3R | 25572515..25573121 | 13..620 | 99 | | Minus |
BO05505.5prime Sequence
881 bp (738 high quality bases) assembled on 2005-12-02
> BO05505.5prime
GAAGTTATCAGTCGACATGCCGGACATCAAGATAACGCCCTTGGGCGCCG
GCCAGGATGTGGGCCGCAGCTGTCTGCTGCTCTCGATGGGCGGGAAGAAC
ATAATGCTCGACTGCGGGATGCATATGGGCTACAACGACGAGCGCCGCTT
CCCGGACTTCTCCTACATAGTGCCGGAGGGTCCGATCACCAGCCACATTG
ACTGTGTGATCATCTCGCACTTCCACCTGGATCACTGCGGGGCCTTGCCC
TACATGTCAGAGATTGTGGGCTACACGGGGCCCATCTACATGACGCATCC
GACCAAGGCCATAGCACCCATCCTCCTGGAGGACATGCGGAAGGTGGCCG
TAGAGCGGAAAGGCGAGTCGAACTTCTTTACCACCCAGATGATCAAGGAC
TGCATGAAGAAGGTGATTCCCGTCACACTTCACCAGAGTATGATGGTGGA
CACGGACCTTGAGATCAAAGCCTACTATGCAGGCCATGTCCTGGGCGCCG
CCATGTTCTGGATCAAGGTGGGCTCCCAGAGCGTTGTCTACACGGGGGAC
TACAACATGACTCCAGACAGGCATCTGGGAGCCGCCTGGATAGACAAGTG
CCGGCCGGACTTGCTGATCTCCGAGAGCACCTACGCCACTACCATTAGGG
ACTCGAAGCGGTGTCGCGAGAGGGACTTCCTCAAGAAAGTTCACGAGTGC
GTGGCTAAGGGCGGCAAGGTTTTAATCCCTGTTTTTGCCCTGGGTCGCGC
CCAGGAGCTGTGCATCCTGCTGGAGACGTACTGGGAGCGCATGAACCTCA
AGTACCCCATATACTTTGCTCTGGGTCTTACCGAGAAGGCCAATACCTAC
TACAAAATGTTCATCACCTGGACGAACCAGA
BO05505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1972-PA | 1794 | CG1972-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 2043 | CG1972-RA | 134..998 | 17..881 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29745762..29746413 | 230..881 | 3260 | 100 | Plus |
| 3R | 32079331 | 3R | 29745470..29745683 | 17..230 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:41:19 has no hits.
BO05505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:40 Download gff for
BO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:06 Download gff for
BO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:23 Download gff for
BO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 129..997 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:26 Download gff for
BO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 129..997 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:26 Download gff for
BO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29745465..29745683 | 9..230 | 98 | -> | Plus |
| 3R | 29745763..29746412 | 231..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:23 Download gff for
BO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25571187..25571405 | 9..230 | 98 | -> | Plus |
| arm_3R | 25571485..25572134 | 231..880 | 100 | | Plus |
BO05505.complete Sequence
1825 bp (1825 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630069
> BO05505.complete
GAAGTTATCAGTCGACATGCCGGACATCAAGATAACGCCCTTGGGCGCCG
GCCAGGATGTGGGCCGCAGCTGTCTGCTGCTCTCGATGGGCGGGAAGAAC
ATAATGCTCGACTGCGGGATGCATATGGGCTACAACGACGAGCGCCGCTT
CCCGGACTTCTCCTACATAGTGCCGGAGGGTCCGATCACCAGCCACATTG
ACTGTGTGATCATCTCGCACTTCCACCTGGATCACTGCGGGGCCTTGCCC
TACATGTCAGAGATTGTGGGCTACACGGGGCCCATCTACATGACGCATCC
GACCAAGGCCATAGCACCCATCCTCCTGGAGGACATGCGGAAGGTGGCCG
TAGAGCGGAAAGGCGAGTCGAACTTCTTTACCACCCAGATGATCAAGGAC
TGCATGAAGAAGGTGATTCCCGTCACACTTCACCAGAGTATGATGGTGGA
CACGGACCTTGAGATCAAAGCCTACTATGCAGGCCATGTCCTGGGCGCCG
CCATGTTCTGGATCAAGGTGGGCTCCCAGAGCGTTGTCTACACGGGGGAC
TACAACATGACTCCAGACAGGCATCTGGGAGCCGCCTGGATAGACAAGTG
CCGGCCGGACTTGCTGATCTCCGAGAGCACCTACGCCACTACCATTAGGG
ACTCGAAGCGGTGTCGCGAGAGGGACTTCCTCAAGAAAGTTCACGAGTGC
GTGGCTAAGGGCGGCAAGGTTTTAATCCCTGTTTTTGCCCTGGGTCGCGC
CCAGGAGCTGTGCATCCTGCTGGAGACGTACTGGGAGCGCATGAACCTCA
AGTACCCCATATACTTTGCTCTGGGTCTTACCGAGAAGGCCAATACCTAC
TACAAAATGTTCATCACCTGGACGAACCAGAAGATCCGCAAGACCTTCGT
TCACCGCAACATGTTCGACTTCAAGCACATCAAGCCCTTTGACAAGGCCT
ACATCGACAATCCTGGCGCGATGGTAGTGTTCGCCACGCCAGGCATGCTG
CACGCAGGTCTTTCCCTGCAGATCTTCAAGAAGTGGGCGCCGAATGAGAA
CAACATGGTGATTATGCCCGGCTACTGTGTGCAGGGAACCGTGGGCAACA
AGATTCTCGGTGGCGCCAAGAAGGTGGAGTTCGAGAACCGCCAGGTGGTC
GAGGTCAAAATGGCCGTGGAGTACATGAGCTTCTCGGCCCATGCAGATGC
CAAAGGCATTATGCAGCTAATTCAGAACTGTGAGCCAAAGAACGTCATGC
TCGTCCATGGTGAAGCAGGGAAGATGAAGTTCCTGCGCTCGAAGATCAAA
GACGAATTCAACCTGGAAACCTACATGCCGGCCAACGGCGAAACCTGTGT
GATTTCTACGCCTGTGAAGATACCAGTAGATGCGTCCGTTTCCCTGCTTA
AAGCAGAGGCCCGGTCCTACAACGCCCAGCCACCGGATCCCAAGAGGCGG
CGACTAATCCATGGCGTCCTCGTAATGAAGGACAATCGAATAATGCTGCA
AAACCTAACCGATGCCCTGAAGGAAATCGGAATTAATCGACATGTTATGC
GATTTACATCCAAGGTCAAAATGGACGACTCCGGACCGGTCATTCGCACA
AGCGAAAGACTGAAGACTCTGCTCGAAGAAAAGCTAGCCGGCTGGACGGT
GACGATGCAGGAGAACGGCTCCATAGCCATCGAATCCGTTGAGGTGAAGG
TGGAGGAGGACGAGAAGGATCCCAAGCAGAAGAACATTTTGATATCGTGG
ACCAACCAGGACGAGGACATTGGAGCCTACATACTGAATGTGCTGCAGAA
TATGTGCGCAAGCTTTCTAGACCAT
BO05505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 1794 | CG1972-PA | 1..1791 | 17..1807 | 8955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 2043 | CG1972-RA | 134..1924 | 17..1807 | 8955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29745762..29746738 | 230..1206 | 4885 | 100 | Plus |
| 3R | 32079331 | 3R | 29746791..29747394 | 1204..1807 | 3020 | 100 | Plus |
| 3R | 32079331 | 3R | 29745470..29745683 | 17..230 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:46 has no hits.
BO05505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:42 Download gff for
BO05505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-RA | 1..1794 | 17..1808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:47 Download gff for
BO05505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-RA | 112..1912 | 9..1813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:24 Download gff for
BO05505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 134..1924 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:43 Download gff for
BO05505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-RA | 112..1912 | 9..1813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:44 Download gff for
BO05505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 134..1924 | 17..1809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:44 Download gff for
BO05505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29745470..29745683 | 17..230 | 100 | -> | Plus |
| 3R | 29745763..29746737 | 231..1205 | 100 | -> | Plus |
| 3R | 29746793..29747394 | 1206..1809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:24 Download gff for
BO05505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25571192..25571405 | 17..230 | 100 | -> | Plus |
| arm_3R | 25571485..25572459 | 231..1205 | 100 | -> | Plus |
| arm_3R | 25572515..25573116 | 1206..1809 | 99 | | Plus |
BO05505.pep Sequence
Translation from 16 to 1825
> BO05505.pep
MPDIKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSY
IVPEGPITSHIDCVIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIA
PILLEDMRKVAVERKGESNFFTTQMIKDCMKKVIPVTLHQSMMVDTDLEI
KAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLL
ISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRAQELCI
LLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMF
DFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM
PGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQ
LIQNCEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGETCVISTPV
KIPVDASVSLLKAEARSYNAQPPDPKRRRLIHGVLVMKDNRIMLQNLTDA
LKEIGINRHVMRFTSKVKMDDSGPVIRTSERLKTLLEEKLAGWTVTMQEN
GSIAIESVEVKVEEDEKDPKQKNILISWTNQDEDIGAYILNVLQNMCASF
LDH
BO05505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-PA | 597 | CG1972-PA | 1..597 | 1..597 | 3148 | 100 | Plus |
| Cpsf73-PA | 684 | CG7698-PA | 10..456 | 1..440 | 817 | 39 | Plus |
| Cpsf100-PA | 756 | CG1957-PA | 5..392 | 4..383 | 359 | 26.5 | Plus |
